Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Reverse (-)

21963268 .. 21967646

Gene Structure 4379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTTGGACTTCCCTCTTGGGCTGGATCCTCTCTATCTCAGCTTCTCTGGTCGCTGCGGGTTTTCGACGTCTCTTCCAAATATGGGCGGCGGTTGGATCTTAGTTTGCACCAAGGCATGCGGTGCCCTGAACCCGATCCCAAAGGTAGTGATGTGGATTTTGGGCCACCGGAGGTTGATTGGCTTGATTCGGAAACTACAATGACAGACTGTGGCGTTGTCCTAGTTGTCACTATGTTGATCATGGCGGCGAAGTTGTGCAGTTTTTGGGCTGGGATCAATGCTTTGACGCCGATGTGGTTGACAACAGAATCTTCTGAGACTGATGACGGCGCAACCGTGATGCTAACAGGGGCTGAACACCGGATTCTTACGCTGCTGGTGTGTTCTGGTCTGATGACGGCGACTTCAGAGTGCCTAGAGATGGGTGGCCAAATCAGTCTGGGCCTTCATGAATTTGGGCTTTGTGGATGGTCTAGCGAGCAATTGGGCCTTTTTCTAGCCTCAATTCCAAGCCAAGCTCTTGGTCGAGATACATTCTGGACGTGGGTCTTGGGTGTTAGCAAAATAGCGACCCTCAAGTATAAGGGGTACAAGGGAGGAAAGCTTTCATCCATGGCCGAAATGCCGGTGGAGAGATTCTTCAAGGCTTGGGAGGAGTTGCAGCATCACGGCCGTGTCCTAGCAGATCGTCGGTGCAAGGTTTCACCGGTCGATTCGGACCCACCTCTATACGCCGTCGTTTCCATGGCCGAGCTCTCACAATTCGGAACTGTTCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

28.56

Weight (kDa)

5.14

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	123
AciI	CCGC	5 cut(s)	58, 88, 91, 121, 248
AclWI	GGATC	5 cut(s)	21, 34, 105, 131, 284
AcoI	YGGCCR	4 cut(s)	430, 618, 673, 750
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	393
AcyI	GRCGYC	2 cut(s)	69, 290
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	84, 424
AgeI	ACCGGT	1 cut(s)	709
AgsI	TTSAA	1 cut(s)	646
AjiI	CACGTC	1 cut(s)	546
AleI	CACNNNNGTG	1 cut(s)	675
AluBI	AGCT	4 cut(s)	43, 521, 607, 757
AluI	AGCT	4 cut(s)	43, 521, 607, 757
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	2 cut(s)	76, 314
AlwI	GGATC	5 cut(s)	21, 34, 105, 131, 284
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	7 cut(s)	164, 430, 445, 490, 618, 673, 750
ApeKI	GCWGC	3 cut(s)	55, 376, 664
ApoI	RAATTY	1 cut(s)	455
AsiGI	ACCGGT	1 cut(s)	709
Asp700I	GAANNNNTTC	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	4 cut(s)	164, 445, 490, 721
AsuHPI	GGTGA	1 cut(s)	699
AvaII	GGWCC	1 cut(s)	721
BaeGI	GKGCMC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	42, 363, 676
BccI	CCATC	2 cut(s)	418, 465
BceAI	ACGGC	5 cut(s)	346, 417, 660, 688, 722
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	76, 314
BfaI	CTAG	5 cut(s)	224, 419, 477, 500, 683
BisI	GCNGC	5 cut(s)	56, 89, 249, 377, 665
BlsI	GCNGC	5 cut(s)	57, 90, 250, 378, 666
Bme18I	GGWCC	1 cut(s)	721
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	4 cut(s)	164, 445, 490, 721
BmiI	GGNNCC	3 cut(s)	28, 125, 723
BmsI	GCATC	2 cut(s)	333, 676
BoxI	GACNNNNGTC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	563
BsaHI	GRCGYC	2 cut(s)	69, 290
BsaJI	CCNNGG	3 cut(s)	112, 615, 747
BsaWI	WCCGGW	3 cut(s)	169, 363, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 424
Bse118I	RCCGGY	2 cut(s)	628, 709
BseDI	CCNNGG	3 cut(s)	112, 615, 747
BseGI	GGATG	2 cut(s)	476, 611
BseLI	CCNNNNNNNGG	2 cut(s)	84, 424
BseMII	CTCAG	2 cut(s)	53, 309
BseRI	GAGGAG	1 cut(s)	671
BseSI	GKGCMC	1 cut(s)	128
BseX3I	CGGCCG	1 cut(s)	673
BseXI	GCAGC	3 cut(s)	42, 363, 676
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	280
Bsh1285I	CGRYCG	2 cut(s)	676, 714
BshFI	GGCC	7 cut(s)	166, 432, 447, 492, 620, 675, 752
BshNI	GGYRCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	709
BsiEI	CGRYCG	2 cut(s)	676, 714
BsiHKAI	GWGCWC	1 cut(s)	759
BsiSI	CCGG	4 cut(s)	170, 364, 629, 710
BslI	CCNNNNNNNGG	2 cut(s)	84, 424
BsmAI	GTCTC	2 cut(s)	76, 314
BsmBI	CGTCTC	1 cut(s)	76
BsnI	GGCC	7 cut(s)	166, 432, 447, 492, 620, 675, 752
Bsp1286I	GDGCHC	2 cut(s)	128, 759
Bsp143I	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
Bsp19I	CCATGG	2 cut(s)	615, 747
BspACI	CCGC	5 cut(s)	58, 88, 91, 121, 248
BspANI	GGCC	7 cut(s)	166, 432, 447, 492, 620, 675, 752
BspCNI	CTCAG	2 cut(s)	52, 310
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	28, 125, 723
BspPI	GGATC	5 cut(s)	21, 34, 105, 131, 284
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	628, 709
BssAI	RCCGGY	2 cut(s)	628, 709
BssECI	CCNNGG	3 cut(s)	112, 615, 747
BssMI	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
BssNI	GRCGYC	2 cut(s)	69, 290
BssT1I	CCWWGG	3 cut(s)	112, 615, 747
Bst4CI	ACNGT	3 cut(s)	212, 340, 775
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	2 cut(s)	69, 290
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	119, 482
BstDEI	CTNAG	3 cut(s)	39, 101, 318
BstDSI	CCRYGG	2 cut(s)	615, 747
BstF5I	GGATG	2 cut(s)	476, 611
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	6 cut(s)	29, 100, 139, 243, 279, 691
BstMAI	GTCTC	2 cut(s)	76, 314
BstMBI	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
BstMCI	CGRYCG	2 cut(s)	676, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	121
BstPAI	GACNNNNGTC	1 cut(s)	548
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	42, 363, 676
BstX2I	RGATCY	2 cut(s)	26, 97
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	2 cut(s)	26, 97
BstZI	CGGCCG	1 cut(s)	673
BsuRI	GGCC	7 cut(s)	166, 432, 447, 492, 620, 675, 752
BtgI	CCRYGG	2 cut(s)	615, 747
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	476, 611
Cac8I	GCNNGC	2 cut(s)	119, 482
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	2 cut(s)	628, 709
Cfr13I	GGNCC	4 cut(s)	164, 445, 490, 721
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	592
CspAI	ACCGGT	1 cut(s)	709
CviAII	CATG	5 cut(s)	118, 244, 452, 616, 748
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	3 cut(s)	39, 101, 318
DpnI	GATC	6 cut(s)	28, 99, 138, 242, 278, 690
DpnII	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
EaeI	YGGCCR	4 cut(s)	430, 618, 673, 750
EagI	CGGCCG	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	757
EclXI	CGGCCG	1 cut(s)	673
Eco130I	CCWWGG	3 cut(s)	112, 615, 747
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	721
Eco52I	CGGCCG	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	757
EcoT14I	CCWWGG	3 cut(s)	112, 615, 747
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	3 cut(s)	112, 615, 747
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	5 cut(s)	121, 247, 455, 619, 751
FaiI	YATR	9 cut(s)	84, 119, 236, 245, 453, 585, 617, 733, 749
FatI	CATG	5 cut(s)	117, 243, 451, 615, 747
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	56, 89, 249, 377, 665
FokI	GGATG	2 cut(s)	483, 598
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	5 cut(s)	56, 89, 249, 377, 665
FspBI	CTAG	5 cut(s)	224, 419, 477, 500, 683
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	5 cut(s)	56, 89, 249, 377, 665
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	7 cut(s)	166, 432, 447, 492, 620, 675, 752
HapII	CCGG	4 cut(s)	170, 364, 629, 710
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	2 cut(s)	69, 290
Hin1II	CATG	5 cut(s)	121, 247, 455, 619, 751
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	5 cut(s)	188, 311, 367, 639, 716
HpaII	CCGG	4 cut(s)	170, 364, 629, 710
HphI	GGTGA	1 cut(s)	699
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	6 cut(s)	193, 319, 396, 412, 721, 770
Hpy188III	TCNNGA	3 cut(s)	452, 530, 541
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	3 cut(s)	71, 696, 743
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	3 cut(s)	212, 340, 775
HpyCH4IV	ACGT	2 cut(s)	69, 545
HpyCH4V	TGCA	4 cut(s)	109, 261, 664, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	3 cut(s)	39, 101, 318
HpySE526I	ACGT	2 cut(s)	69, 545
Hsp92I	GRCGYC	2 cut(s)	69, 290
Hsp92II	CATG	5 cut(s)	121, 247, 455, 619, 751
HspAI	GCGC	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
Lsp1109I	GCAGC	3 cut(s)	42, 363, 676
LweI	GCATC	2 cut(s)	333, 676
MaeI	CTAG	5 cut(s)	224, 419, 477, 500, 683
MaeII	ACGT	2 cut(s)	69, 545
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	6 cut(s)	28, 99, 138, 242, 278, 690
MboI	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
MboII	GAAGA	3 cut(s)	66, 306, 634
MfeI	CAATTG	1 cut(s)	485
MflI	RGATCY	2 cut(s)	26, 97
MhlI	GDGCHC	2 cut(s)	128, 759
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	4 cut(s)	455, 485, 507, 764
MluNI	TGGCCA	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	8 cut(s)	25, 40, 166, 514, 587, 593, 649, 738
Mox20I	TGGCCA	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	607
MscI	TGGCCA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	432
MspI	CCGG	4 cut(s)	170, 364, 629, 710
MunI	CAATTG	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	123
NcoI	CCATGG	2 cut(s)	615, 747
NdeII	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
NlaIII	CATG	5 cut(s)	121, 247, 455, 619, 751
NlaIV	GGNNCC	3 cut(s)	28, 125, 723
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	675
PaeI	GCATGC	1 cut(s)	121
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	5 cut(s)	188, 311, 367, 639, 716
PinAI	ACCGGT	1 cut(s)	709
PkrI	GCNGC	5 cut(s)	57, 90, 250, 378, 666
PshAI	GACNNNNGTC	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	759
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	28, 125, 723
PspPI	GGNCC	4 cut(s)	164, 445, 490, 721
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	26, 97
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	675
SacI	GAGCTC	1 cut(s)	759
SatI	GCNGC	5 cut(s)	56, 89, 249, 377, 665
Sau3AI	GATC	6 cut(s)	26, 97, 136, 240, 276, 688
Sau96I	GGNCC	4 cut(s)	164, 445, 490, 721
SduI	GDGCHC	2 cut(s)	128, 759
SfaNI	GCATC	2 cut(s)	333, 676
SinI	GGWCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	4 cut(s)	455, 485, 507, 764
SsiI	CCGC	5 cut(s)	58, 88, 91, 121, 248
SspMI	CTAG	5 cut(s)	224, 419, 477, 500, 683
SstI	GAGCTC	1 cut(s)	759
StyI	CCWWGG	3 cut(s)	112, 615, 747
TaaI	ACNGT	3 cut(s)	212, 340, 775
TaiI	ACGT	2 cut(s)	72, 548
TaqI	TCGA	4 cut(s)	66, 529, 714, 778
TasI	AATT	4 cut(s)	455, 485, 507, 764
TauI	GCSGC	2 cut(s)	91, 251
TfiI	GAWTC	5 cut(s)	188, 311, 367, 639, 716
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	55, 376, 664
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	440, 468, 600
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	607
XspI	CTAG	5 cut(s)	224, 419, 477, 500, 683
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.