RchiOBHm_Chr6g0283891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001671
Physical Location & Seq
Forward (+)
47115718 .. 47116829
1112 bp
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UTR
Exon/CDS
Intron
PRQ25457

Sequence Viewer

Length: 189 bp
ATGAGAGTGGTATGGATTGGTGGTCGGGTTCAACCAGGCTCAAAGCTGAAATGGGCAGAAGAATGGCCGTGCCAGATTAGGCCGAGGCGAGGCCGGCTCAAGTCTGGGCTGTACGCAGTCAGGGATGATCGGAGCATGAAGCTTCGAAGCCAAGAGGTGAGCAGCACTGTTTGGCTGGTGATGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.23

Weight (kDa)

11.22

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 65
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 46, 142
AluI AGCT 2 cut(s) 46, 142
AoxI GGCC 3 cut(s) 65, 80, 91
ApeKI GCWGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 169
AsuII TTCGAA 1 cut(s) 145
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 36
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 81, 113
Bpu14I TTCGAA 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 93
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 174
BshFI GGCC 3 cut(s) 67, 82, 93
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 89
BsnI GGCC 3 cut(s) 67, 82, 93
Bsp119I TTCGAA 1 cut(s) 145
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 3 cut(s) 67, 82, 93
BspT104I TTCGAA 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 174
BsuRI GGCC 3 cut(s) 67, 82, 93
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 93
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 136
CviQI GTAC 1 cut(s) 112
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 13, 137
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
HaeIII GGCC 3 cut(s) 67, 82, 93
HapII CCGG 1 cut(s) 94
Hin1II CATG 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 140
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
Hsp92II CATG 1 cut(s) 139
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 7 cut(s) 21, 48, 86, 90, 106, 107, 161
Lsp1109I GCAGC 1 cut(s) 174
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 71
MnlI CCTC 3 cut(s) 78, 83, 148
MroNI GCCGGC 1 cut(s) 93
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 94
NaeI GCCGGC 1 cut(s) 95
NdeII GATC 1 cut(s) 127
NgoMIV GCCGGC 1 cut(s) 93
NlaIII CATG 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 108
NspV TTCGAA 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 36
SetI ASST 3 cut(s) 48, 144, 159
SfuI TTCGAA 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 145
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.