Rh7DG352600

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001671
Physical Location & Seq
Reverse (-)
46992635 .. 47001032
8398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG352600.1

Sequence Viewer

Length: 1269 bp
ATGGCGACCGGTATCGGCCTCCCTCTACGTCATCTGCTGATAACACTTAGAAGCCGACCTTGTGCGGCGACCACCCTACCTTGCTCTAGGTTTCTCATCATCTCTGGCCGGAAGGAAATAGGTGATGTGAGGGTTATGGATCGGTGCTCTGGTCCGATCAGAATCAATGGGGATTGGGTGGAAGAATGGCCGTGTCGAATCAGGCCGAGGCGAGGCCGGCTCAAGTTTGGGTGGTTCACAGTCGGGAACGACCAACGCCTACGGTCTGGAAGCCAAGAGATGAGAGGTCCTCGGTTGTGCGACCTCTGGACCAGGATCCAAACCGCCAAACTCCGATTGATGGCGGCGCCGGCCTTTGTACTCCAACTTATGAATGTGGCGGAGATTGTCGTTGTGCACCGTGAAGTGAATCAGGTTTTGGAATATGCAGAGCACGCTGGTGGGGTGTCTGAGTTGATGGCGATGGCTGCATCTGGACTGCTCCAGCTCCAGCCTCGCCTTCGTCCGATTGAGAAGTCTTCAATTTCTGGTATCGAGCTCGTCAGCCTCACCTTCAAGTCTTCAATTGGTTGCCTTCGAGTTCTTGGTGCGATTCAGAAATTGAACTGGTTTGGTTGTTTTGATGCTTCTGGTTTTGTGAGAAGGCGGAAGCTTTTGACAAACAACTATTCTGGGTTAGCTCATGAACTCTCTAACAATGCCAAATTCGATAGATTTCCACACCCCGCGAATTTTGGCTCAAGAGCTCTGTCAGTTGATGCTGTTCAAGTTACTAATGGAGATGCAAGCAAAGGAGGGCCACTTGTTGAGTATGAGCGAAGAATTGCTGCGGGCGAACTTGTTGATGGTGATGCCTGCCAGGTAAGCACCTTAACAGAACTTCAAAGGCTATATGATGAACTTGTTCAGTCAGCTGATGCCTGCCGGCTGGATAGATATACAACTTCGAGGAAATCTGGAAGGAGTAGATGGTTGTGGTCTCGTTTCATCCCACAGTCTTCAAATGCCTCCCCTGTTAAAGGTATTTATCTTTATGGAGGAGTGGGAACTGGAAAAACTATGTTGATGGACTTGTTTTTCGATCAACTACAATGCAATTGGAGGAAAAAGAGGATTCATTTTCATGATTTTATGTTGAATGTCCACAGCTGCTTGCGAAAGCACCAGGGTGTAGAAGACCCTCTTGAAGTTGTTGCAGGAGAGATAACTGATGAGGCAGTCTTGTTATGTCTTGATGAATTCATGGTACTTGCAAAAGCACAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

422

Amino Acids

47.32

Weight (kDa)

9.38

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AFG1_ATPase PF03969 268 - 416 1.1e-30 AFG1-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccII CGCG 1 cut(s) 728
AciI CCGC 7 cut(s) 65, 324, 344, 380, 646, 726, 830
AclWI GGATC 3 cut(s) 147, 310, 323
AcoI YGGCCR 2 cut(s) 106, 188
AcsI RAATTY 3 cut(s) 704, 730, 1238
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 2 cut(s) 360, 1248
AfiI CCNNNNNNNGG 3 cut(s) 212, 340, 1019
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 9 cut(s) 522, 556, 564, 604, 767, 884, 1002, 1138, 1187
AjnI CCWGG 3 cut(s) 311, 858, 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AleI CACNNNNGTG 2 cut(s) 438, 1167
AluBI AGCT 8 cut(s) 487, 538, 652, 680, 746, 914, 1149, 1264
AluI AGCT 8 cut(s) 487, 538, 652, 680, 746, 914, 1149, 1264
Alw21I GWGCWC 5 cut(s) 149, 399, 435, 540, 748
Alw26I GTCTC 1 cut(s) 984
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 3 cut(s) 147, 310, 323
AoxI GGCC 7 cut(s) 16, 106, 188, 203, 214, 351, 797
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 3 cut(s) 467, 827, 1149
ApoI RAATTY 3 cut(s) 704, 730, 1238
ArsI GACNNNNNNTTYG 2 cut(s) 1061, 1093
AsiGI ACCGGT 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 903
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 4 cut(s) 152, 287, 309, 797
AsuHPI GGTGA 3 cut(s) 134, 541, 860
AvaII GGWCC 3 cut(s) 152, 287, 309
BaeGI GKGCMC 1 cut(s) 399
BamHI GGATCC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 540, 748
BbsI GAAGAC 4 cut(s) 510, 552, 990, 1182
Bbv12I GWGCWC 5 cut(s) 149, 399, 435, 540, 748
BbvI GCAGC 3 cut(s) 454, 814, 1136
BccI CCATC 6 cut(s) 334, 451, 457, 839, 963, 1060
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 3 cut(s) 313, 860, 1166
BcoDI GTCTC 1 cut(s) 984
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 5 cut(s) 66, 345, 468, 828, 1150
BlsI GCNGC 5 cut(s) 67, 346, 469, 829, 1151
Bme1390I CCNGG 3 cut(s) 313, 860, 1166
Bme18I GGWCC 3 cut(s) 152, 287, 309
BmgT120I GGNCC 4 cut(s) 152, 287, 309, 797
BmiI GGNNCC 2 cut(s) 317, 348
BmrFI CCNGG 3 cut(s) 313, 860, 1166
BmsI GCATC 6 cut(s) 479, 613, 748, 772, 841, 907
BpiI GAAGAC 4 cut(s) 510, 552, 990, 1182
BplI GAGNNNNNCTC 4 cut(s) 204, 236, 274, 306
BpmI CTGGAG 2 cut(s) 467, 473
BpuEI CTTGAG 2 cut(s) 206, 724
BsaBI GATNNNNATC 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 984
BsaJI CCNNGG 3 cut(s) 206, 290, 1165
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 340, 1019
Bse118I RCCGGY 4 cut(s) 8, 216, 349, 924
Bse1I ACTGG 2 cut(s) 611, 1054
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 3 cut(s) 313, 860, 1166
BseDI CCNNGG 3 cut(s) 206, 290, 1165
BseGI GGATG 1 cut(s) 987
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 212, 340, 1019
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 2 cut(s) 611, 1054
BseRI GAGGAG 1 cut(s) 1053
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 3 cut(s) 454, 814, 1136
Bsh1236I CGCG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 7 cut(s) 18, 108, 190, 205, 216, 353, 799
BshNI GGYRCC 1 cut(s) 346
BshTI ACCGGT 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 5 cut(s) 149, 399, 435, 540, 748
BsiSI CCGG 5 cut(s) 9, 109, 217, 350, 925
BslI CCNNNNNNNGG 3 cut(s) 212, 340, 1019
BsmAI GTCTC 1 cut(s) 984
BsnI GGCC 7 cut(s) 18, 108, 190, 205, 216, 353, 799
Bso31I GGTCTC 1 cut(s) 984
Bsp1286I GDGCHC 5 cut(s) 149, 399, 435, 540, 748
Bsp143I GATC 4 cut(s) 139, 156, 315, 1081
BspACI CCGC 7 cut(s) 65, 324, 344, 380, 646, 726, 830
BspANI GGCC 7 cut(s) 18, 108, 190, 205, 216, 353, 799
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 728
BspHI TCATGA 2 cut(s) 682, 1123
BspLI GGNNCC 2 cut(s) 317, 348
BspPI GGATC 3 cut(s) 147, 310, 323
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 984
BsrFI RCCGGY 4 cut(s) 8, 216, 349, 924
BsrI ACTGG 2 cut(s) 611, 1054
BssAI RCCGGY 4 cut(s) 8, 216, 349, 924
BssECI CCNNGG 3 cut(s) 206, 290, 1165
BssMI GATC 4 cut(s) 139, 156, 315, 1081
BssNI GRCGYC 1 cut(s) 347
Bst2UI CCWGG 3 cut(s) 313, 860, 1166
Bst4CI ACNGT 4 cut(s) 241, 264, 401, 996
BstACI GRCGYC 1 cut(s) 347
BstC8I GCNNGC 9 cut(s) 218, 351, 435, 787, 832, 856, 922, 926, 1154
BstDEI CTNAG 2 cut(s) 47, 450
BstENI CCTNNNNNAGG 1 cut(s) 1017
BstF5I GGATG 1 cut(s) 987
BstFNI CGCG 1 cut(s) 728
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 4 cut(s) 142, 159, 318, 1084
BstMAI GTCTC 1 cut(s) 984
BstMBI GATC 4 cut(s) 139, 156, 315, 1081
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 5 cut(s) 217, 350, 434, 467, 864
BstNI CCWGG 3 cut(s) 313, 860, 1166
BstSCI CCNGG 3 cut(s) 311, 858, 1164
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 3 cut(s) 454, 814, 1136
BstV2I GAAGAC 4 cut(s) 510, 552, 990, 1182
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 7 cut(s) 18, 108, 190, 205, 216, 353, 799
BtgZI GCGATG 1 cut(s) 476
BtsCI GGATG 1 cut(s) 987
Cac8I GCNNGC 9 cut(s) 218, 351, 435, 787, 832, 856, 922, 926, 1154
CciI TCATGA 2 cut(s) 682, 1123
CfoI GCGC 1 cut(s) 349
Cfr10I RCCGGY 4 cut(s) 8, 216, 349, 924
Cfr13I GGNCC 4 cut(s) 152, 287, 309, 797
Csp6I GTAC 2 cut(s) 359, 1247
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 3 cut(s) 683, 1124, 1243
CviQI GTAC 2 cut(s) 359, 1247
DdeI CTNAG 2 cut(s) 47, 450
DinI GGCGCC 1 cut(s) 348
DpnI GATC 4 cut(s) 141, 158, 317, 1083
DpnII GATC 4 cut(s) 139, 156, 315, 1081
EaeI YGGCCR 2 cut(s) 106, 188
EciI GGCGGA 2 cut(s) 395, 661
Ecl136II GAGCTC 2 cut(s) 538, 746
Eco24I GRGCYC 2 cut(s) 540, 748
Eco31I GGTCTC 1 cut(s) 984
Eco47I GGWCC 3 cut(s) 152, 287, 309
Eco53kI GAGCTC 2 cut(s) 538, 746
EcoICRI GAGCTC 2 cut(s) 538, 746
EcoNI CCTNNNNNAGG 1 cut(s) 1017
EcoO109I RGGNCCY 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 1238
EcoRII CCWGG 3 cut(s) 311, 858, 1164
EcoT38I GRGCYC 2 cut(s) 540, 748
EgeI GGCGCC 1 cut(s) 348
EheI GGCGCC 1 cut(s) 348
FaeI CATG 3 cut(s) 686, 1127, 1246
FalI AAGNNNNNCTT 5 cut(s) 43, 75, 1167, 1199, 1248
FatI CATG 3 cut(s) 682, 1123, 1242
FauI CCCGC 2 cut(s) 733, 823
Fnu4HI GCNGC 5 cut(s) 66, 345, 468, 828, 1150
FokI GGATG 1 cut(s) 974
FriOI GRGCYC 2 cut(s) 540, 748
Fsp4HI GCNGC 5 cut(s) 66, 345, 468, 828, 1150
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 348
GluI GCNGC 5 cut(s) 66, 345, 468, 828, 1150
GsuI CTGGAG 2 cut(s) 467, 473
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 7 cut(s) 18, 108, 190, 205, 216, 353, 799
HapII CCGG 5 cut(s) 9, 109, 217, 350, 925
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 3 cut(s) 686, 1127, 1246
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 5 cut(s) 162, 198, 409, 592, 1114
HpaII CCGG 5 cut(s) 9, 109, 217, 350, 925
HphI GGTGA 3 cut(s) 134, 541, 860
Hpy166II GTNNAC 3 cut(s) 237, 397, 1144
Hpy188I TCNGA 6 cut(s) 156, 161, 335, 451, 507, 597
Hpy8I GTNNAC 3 cut(s) 237, 397, 1144
HpyAV CCTTC 6 cut(s) 106, 509, 562, 584, 636, 954
HpyCH4III ACNGT 4 cut(s) 241, 264, 401, 996
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 7 cut(s) 397, 428, 470, 785, 1095, 1196, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 217, 350, 434, 467, 864
HpyF3I CTNAG 2 cut(s) 47, 450
HpySE526I ACGT 1 cut(s) 28
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 3 cut(s) 686, 1127, 1246
HspAI GCGC 1 cut(s) 347
KasI GGCGCC 1 cut(s) 346
KroI GCCGGC 3 cut(s) 216, 349, 924
KroNI GCCGGC 3 cut(s) 218, 351, 926
Kzo9I GATC 4 cut(s) 139, 156, 315, 1081
LmnI GCTCC 2 cut(s) 486, 492
Lsp1109I GCAGC 3 cut(s) 454, 814, 1136
LweI GCATC 6 cut(s) 479, 613, 748, 772, 841, 907
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 769
MalI GATC 4 cut(s) 141, 158, 317, 1083
MboI GATC 4 cut(s) 139, 156, 315, 1081
MboII GAAGA 6 cut(s) 194, 510, 552, 831, 990, 1187
MfeI CAATTG 2 cut(s) 564, 1096
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 5 cut(s) 149, 399, 435, 540, 748
MluCI AATT 8 cut(s) 522, 564, 599, 704, 730, 822, 1096, 1238
Mly113I GGCGCC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 388
MroNI GCCGGC 3 cut(s) 216, 349, 924
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 2 cut(s) 872, 1017
MslI CAYNNNNRTG 3 cut(s) 438, 1122, 1167
MspA1I CMGCKG 2 cut(s) 914, 1149
MspI CCGG 5 cut(s) 9, 109, 217, 350, 925
MspR9I CCNGG 3 cut(s) 313, 860, 1166
MunI CAATTG 2 cut(s) 564, 1096
MvaI CCWGG 3 cut(s) 313, 860, 1166
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 5 cut(s) 217, 350, 434, 467, 864
NaeI GCCGGC 3 cut(s) 218, 351, 926
NarI GGCGCC 1 cut(s) 347
NdeII GATC 4 cut(s) 139, 156, 315, 1081
NgoMIV GCCGGC 3 cut(s) 216, 349, 924
NlaIII CATG 3 cut(s) 686, 1127, 1246
NlaIV GGNNCC 2 cut(s) 317, 348
NmeAIII GCCGAG 1 cut(s) 231
OliI CACNNNNGTG 2 cut(s) 438, 1167
PagI TCATGA 2 cut(s) 682, 1123
PdiI GCCGGC 3 cut(s) 218, 351, 926
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 5 cut(s) 162, 198, 409, 592, 1114
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 5 cut(s) 67, 346, 469, 829, 1151
PluTI GGCGCC 1 cut(s) 350
PpuMI RGGWCCY 1 cut(s) 287
Psp124BI GAGCTC 2 cut(s) 540, 748
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 3 cut(s) 311, 858, 1164
PspGI CCWGG 3 cut(s) 311, 858, 1164
PspN4I GGNNCC 2 cut(s) 317, 348
PspPI GGNCC 4 cut(s) 152, 287, 309, 797
PspPPI RGGWCCY 1 cut(s) 287
PsuI RGATCY 1 cut(s) 315
PvuII CAGCTG 2 cut(s) 914, 1149
RsaI GTAC 2 cut(s) 360, 1248
RsaNI GTAC 2 cut(s) 359, 1247
RseI CAYNNNNRTG 3 cut(s) 438, 1122, 1167
SacI GAGCTC 2 cut(s) 540, 748
SaqAI TTAA 2 cut(s) 872, 1017
SatI GCNGC 5 cut(s) 66, 345, 468, 828, 1150
Sau3AI GATC 4 cut(s) 139, 156, 315, 1081
Sau96I GGNCC 4 cut(s) 152, 287, 309, 797
ScrFI CCNGG 3 cut(s) 313, 860, 1166
SduI GDGCHC 5 cut(s) 149, 399, 435, 540, 748
SfaNI GCATC 6 cut(s) 479, 613, 748, 772, 841, 907
SfoI GGCGCC 1 cut(s) 348
SinI GGWCC 3 cut(s) 152, 287, 309
SmiMI CAYNNNNRTG 3 cut(s) 438, 1122, 1167
SmlI CTYRAG 2 cut(s) 221, 739
SmoI CTYRAG 2 cut(s) 221, 739
Sse9I AATT 8 cut(s) 522, 564, 599, 704, 730, 822, 1096, 1238
SsiI CCGC 7 cut(s) 65, 324, 344, 380, 646, 726, 830
SspDI GGCGCC 1 cut(s) 346
SspMI CTAG 1 cut(s) 87
SstI GAGCTC 2 cut(s) 540, 748
StyD4I CCNGG 3 cut(s) 311, 858, 1164
TaaI ACNGT 4 cut(s) 241, 264, 401, 996
TaiI ACGT 1 cut(s) 31
TaqI TCGA 6 cut(s) 196, 534, 577, 708, 947, 1080
TasI AATT 8 cut(s) 522, 564, 599, 704, 730, 822, 1096, 1238
TatI WGTACW 1 cut(s) 358
TauI GCSGC 2 cut(s) 68, 347
TfiI GAWTC 5 cut(s) 162, 198, 409, 592, 1114
Tru1I TTAA 2 cut(s) 872, 1017
Tru9I TTAA 2 cut(s) 872, 1017
TseI GCWGC 3 cut(s) 467, 827, 1149
TspDTI ATGAA 8 cut(s) 386, 699, 912, 976, 1106, 1112, 1231, 1251
VneI GTGCAC 1 cut(s) 395
VpaK11BI GGWCC 3 cut(s) 152, 287, 309
XagI CCTNNNNNAGG 1 cut(s) 1017
XapI RAATTY 3 cut(s) 704, 730, 1238
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.