Rorug04G0054900

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001671
Physical Location & Seq
Forward (+)
8673505 .. 8674329
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0054900.1

Sequence Viewer

Length: 825 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACCCTTCAATACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACGAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACATCCGAGGAAGGTAGCGTATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAGGCTTAGCATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

274

Amino Acids

30.07

Weight (kDa)

6.08

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 2.9e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 413
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 1 cut(s) 743
AclI AACGTT 1 cut(s) 764
AclWI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
AcsI RAATTY 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 91, 328, 571
AfiI CCNNNNNNNGG 2 cut(s) 413, 664
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 556, 640
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 2 cut(s) 92, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 5 cut(s) 53, 199, 410, 777, 799
AluI AGCT 5 cut(s) 53, 199, 410, 777, 799
Alw21I GWGCWC 3 cut(s) 177, 665, 779
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 3 cut(s) 50, 293, 799
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
Asp700I GAANNNNTTC 3 cut(s) 316, 513, 644
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuHPI GGTGA 2 cut(s) 540, 619
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
BaeGI GKGCMC 3 cut(s) 164, 306, 665
BamHI GGATCC 3 cut(s) 335, 383, 416
BanII GRGCYC 2 cut(s) 262, 779
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 697
Bbv12I GWGCWC 3 cut(s) 177, 665, 779
BbvI GCAGC 3 cut(s) 62, 280, 786
BccI CCATC 3 cut(s) 395, 452, 798
BceAI ACGGC 2 cut(s) 72, 681
BciT130I CCWGG 2 cut(s) 94, 631
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 3 cut(s) 315, 444, 807
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 800
BlpI GCTNAGC 2 cut(s) 778, 812
BlsI GCNGC 3 cut(s) 52, 295, 801
Bme1390I CCNGG 2 cut(s) 94, 631
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
BmrFI CCNGG 2 cut(s) 94, 631
BpiI GAAGAC 1 cut(s) 697
BpmI CTGGAG 3 cut(s) 93, 179, 282
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 2 cut(s) 778, 812
BpuEI CTTGAG 2 cut(s) 113, 793
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 306, 701
BsaWI WCCGGW 1 cut(s) 793
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 664
Bse1I ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 2 cut(s) 94, 631
BseDI CCNNGG 2 cut(s) 306, 701
BseGI GGATG 3 cut(s) 601, 697, 790
BseLI CCNNNNNNNGG 2 cut(s) 413, 664
BseMII CTCAG 2 cut(s) 752, 792
BseNI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseRI GAGGAG 3 cut(s) 44, 632, 635
BseSI GKGCMC 3 cut(s) 164, 306, 665
BseXI GCAGC 3 cut(s) 62, 280, 786
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 3 cut(s) 177, 665, 779
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 794
BslI CCNNNNNNNGG 2 cut(s) 413, 664
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 665, 779
Bsp13I TCCGGA 1 cut(s) 793
Bsp143I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Bsp1720I GCTNAGC 2 cut(s) 778, 812
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 751, 791
BspEI TCCGGA 1 cut(s) 793
BspLI GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
BspPI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
BsrI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BssECI CCNNGG 2 cut(s) 306, 701
BssMI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 631
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 650
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 738, 778, 812
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 3 cut(s) 601, 697, 790
BstKTI GATC 9 cut(s) 136, 189, 338, 346, 386, 419, 467, 475, 627
BstMBI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BstMWI GCNNNNNNNGC 1 cut(s) 808
BstNI CCWGG 2 cut(s) 94, 631
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 92, 629
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 665
BstV1I GCAGC 3 cut(s) 62, 280, 786
BstV2I GAAGAC 1 cut(s) 697
BstX2I RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 601, 697, 790
BtsIMutI CAGTG 3 cut(s) 306, 360, 759
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 3 cut(s) 357, 404, 438
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 327, 570
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 3 cut(s) 90, 327, 570
DdeI CTNAG 3 cut(s) 738, 778, 812
DpnI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
DpnII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
DraI TTTAAA 1 cut(s) 525
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Ecl136II GAGCTC 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 779
Eco47I GGWCC 2 cut(s) 357, 438
Eco53kI GAGCTC 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 777
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 92, 629
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 779
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 7 cut(s) 71, 210, 216, 308, 538, 818, 823
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 800
FokI GGATG 3 cut(s) 588, 684, 777
FriOI GRGCYC 2 cut(s) 262, 779
Fsp4HI GCNGC 3 cut(s) 51, 294, 800
FspBI CTAG 3 cut(s) 315, 444, 807
GluI GCNGC 3 cut(s) 51, 294, 800
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 794
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 3 cut(s) 73, 218, 310
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 1 cut(s) 794
HphI GGTGA 2 cut(s) 540, 619
Hpy166II GTNNAC 3 cut(s) 360, 441, 663
Hpy188I TCNGA 1 cut(s) 702
Hpy188III TCNNGA 7 cut(s) 110, 182, 247, 263, 518, 772, 794
Hpy8I GTNNAC 3 cut(s) 360, 441, 663
HpyAV CCTTC 3 cut(s) 503, 562, 700
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 4 cut(s) 144, 252, 674, 764
HpyCH4V TGCA 2 cut(s) 609, 663
HpyF10VI GCNNNNNNNGC 1 cut(s) 808
HpyF3I CTNAG 3 cut(s) 738, 778, 812
HpySE526I ACGT 4 cut(s) 144, 252, 674, 764
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 3 cut(s) 73, 218, 310
Kpn2I TCCGGA 1 cut(s) 793
Kzo9I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
LmnI GCTCC 2 cut(s) 301, 796
Lsp1109I GCAGC 3 cut(s) 62, 280, 786
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 444, 807
MaeII ACGT 4 cut(s) 144, 252, 674, 764
MaeIII GTNAC 3 cut(s) 682, 721, 745
MalI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
MboI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
MboII GAAGA 3 cut(s) 534, 637, 702
MflI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 665, 779
MluCI AATT 4 cut(s) 349, 397, 430, 526
MroI TCCGGA 1 cut(s) 793
MroXI GAANNNNTTC 3 cut(s) 316, 513, 644
MseI TTAA 2 cut(s) 156, 524
MspA1I CMGCKG 3 cut(s) 53, 199, 410
MspI CCGG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 94, 631
MvaI CCWGG 2 cut(s) 94, 631
MwoI GCNNNNNNNGC 1 cut(s) 808
NcoI CCATGG 1 cut(s) 306
NdeII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 3 cut(s) 316, 513, 644
PfeI GAWTC 2 cut(s) 100, 123
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 3 cut(s) 52, 295, 801
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 779
Psp1406I AACGTT 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 92, 629
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 92, 629
PspN4I GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
PvuII CAGCTG 3 cut(s) 53, 199, 410
RsaI GTAC 3 cut(s) 91, 328, 571
RsaNI GTAC 3 cut(s) 90, 327, 570
SacI GAGCTC 1 cut(s) 779
SaqAI TTAA 2 cut(s) 156, 524
SatI GCNGC 3 cut(s) 51, 294, 800
Sau3AI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 2 cut(s) 94, 631
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 665, 779
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 525
SmlI CTYRAG 3 cut(s) 128, 261, 772
SmoI CTYRAG 3 cut(s) 128, 261, 772
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 4 cut(s) 349, 397, 430, 526
SsiI CCGC 1 cut(s) 743
SspMI CTAG 3 cut(s) 315, 444, 807
SstI GAGCTC 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 92, 629
StyI CCWWGG 1 cut(s) 306
SwaI ATTTAAAT 1 cut(s) 525
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 4 cut(s) 147, 255, 677, 767
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 4 cut(s) 349, 397, 430, 526
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 2 cut(s) 156, 524
Tru9I TTAA 2 cut(s) 156, 524
TscAI CASTG 3 cut(s) 306, 367, 759
TseI GCWGC 3 cut(s) 50, 293, 799
TspDTI ATGAA 3 cut(s) 290, 522, 525
TspRI CASTG 3 cut(s) 306, 367, 759
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 357, 438
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 3 cut(s) 316, 513, 644
XspI CTAG 3 cut(s) 315, 444, 807
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.