Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001671

Physical Location & Seq

Genomic Coordinates Forward (+)

6834554 .. 6834973

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACACTCGAATCCGTTCTTGGGCGGCAACTACCCATCTTAGCCCTAGGTTCTCATCATCTCTTGCCGAAGGAAATAGGTGATGTGAGGGATATGAATCGGTGTTTCGGTTCGATCGCATTCAATGGTGATTGGGTGGACGAATGGTCGTGGTGGATTAGGCCGAGGCAAGGCCGGCTCATGGCTAGGTTGTACGCAATCGGGAATGATTGGCGCCACAGTCGGAAGCCAATAGTTGAGAGGTCCCGTGTGGCGGATGTGCGACCTCCGCACCCGAACAAAGCGGCCAAATTCGTATTGATGGCGGCGAGGGCCTTTGCACACCAACCCGTGGATGTGGCGGAGATAGTTGTTGTGCACCGTGTAGCGAACCAGCATTTGGAGCATGCGAGCACGCCAATGGGTTGTCCGAGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.83

Weight (kDa)

10.15

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28070 AT4G28070 AT4G30490
fragaria_vesca	FvH4_4g08720 FvH4_4g08720
malus_domestica	MD13G1275200.v1.1 MD16G1260700.v1.1
prunus_persica	Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1
pyrus_communis	pycom13g28650 pycom16g22820
rosa_chinensis	RchiOBHm_Chr2g0167931 RchiOBHm_Chr4g0405201 RchiOBHm_Chr6g0283891
rosa_laevigata	RLG00000008864
rosa_multiflora	Rmu_sc0000555.1_g000029 Rmu_sc0002500.1_g000005 Rmu_ssc0000255.1_g000022
rosa_roxburghii	Rroxscaffold_1G00033980 Rroxscaffold_2G00108990 Rroxscaffold_3G00223720 Rroxscaffold_5G00344940 Rroxscaffold_5G00349450 Rroxscaffold_6G00399190 Rroxscaffold_7G00214630
rosa_rugosa	Rorug04G0054800 Rorug04G0054900
rosa_samantha	Rh1AG171300 Rh2BG612400 Rh4AG129700 Rh4AG188200 Rh4BG123600 Rh4CG137000 Rh4DG123200 Rh4DG173800 Rh4DG239400 Rh7DG352600
rosa_wichuraiana	Rw4G002430 Rw4G010480 Rw4G026910 Rw7G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AccB7I	CCANNNNNTGG	2 cut(s)	331, 379
AciI	CCGC	6 cut(s)	25, 254, 269, 284, 305, 341
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	6 cut(s)	21, 170, 181, 253, 331, 379
AgsI	TTSAA	1 cut(s)	124
AhdI	GACNNNNNGTC	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 362, 394
Alw21I	GWGCWC	2 cut(s)	360, 395
Alw44I	GTGCAC	1 cut(s)	356
AoxI	GGCC	4 cut(s)	161, 172, 285, 312
ApaLI	GTGCAC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	15
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	243, 312
AsuHPI	GGTGA	2 cut(s)	92, 140
AvaII	GGWCC	1 cut(s)	243
AvrII	CCTAGG	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	360, 395
BccI	CCATC	2 cut(s)	44, 295
BfaI	CTAG	2 cut(s)	47, 186
BfoI	RGCGCY	1 cut(s)	217
BisI	GCNGC	3 cut(s)	26, 285, 306
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	3 cut(s)	27, 286, 307
Bme18I	GGWCC	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	243, 312
BmiI	GGNNCC	2 cut(s)	215, 245
BsaBI	GATNNNNATC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	46, 164, 330
Bsc4I	CCNNNNNNNGG	6 cut(s)	21, 170, 181, 253, 331, 379
Bse118I	RCCGGY	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	46, 164, 330
BseGI	GGATG	2 cut(s)	262, 340
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	6 cut(s)	21, 170, 181, 253, 331, 379
BseSI	GKGCMC	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	163, 174, 287, 314
BshNI	GGYRCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	360, 395
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	6 cut(s)	21, 170, 181, 253, 331, 379
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	4 cut(s)	163, 174, 287, 314
Bsp1286I	GDGCHC	2 cut(s)	360, 395
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	6 cut(s)	25, 254, 269, 284, 305, 341
BspANI	GGCC	4 cut(s)	163, 174, 287, 314
BspLI	GGNNCC	2 cut(s)	215, 245
BspT107I	GGYRCC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	46, 164, 330
BssMI	GATC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	221, 362
BstACI	GRCGYC	1 cut(s)	214
BstC8I	GCNNGC	4 cut(s)	176, 387, 391, 395
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	262, 340
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 268, 311, 382
BstNSI	RCATGY	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	163, 174, 287, 314
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	262, 340
Cac8I	GCNNGC	4 cut(s)	176, 387, 391, 395
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	243, 312
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	181, 386
CviJI	RGCY	8 cut(s)	44, 163, 174, 178, 185, 229, 287, 314
CviKI_1	RGCY	8 cut(s)	44, 163, 174, 178, 185, 229, 287, 314
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	40
DinI	GGCGCC	1 cut(s)	215
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DriI	GACNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EciI	GGCGGA	2 cut(s)	269, 356
Eco130I	CCWWGG	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	243
EcoO109I	RGGNCCY	2 cut(s)	243, 312
EcoT14I	CCWWGG	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	215
EheI	GGCGCC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	184, 389
FaiI	YATR	3 cut(s)	95, 182, 387
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	180, 385
Fnu4HI	GCNGC	3 cut(s)	26, 285, 306
FokI	GGATG	2 cut(s)	269, 347
Fsp4HI	GCNGC	3 cut(s)	26, 285, 306
FspBI	CTAG	2 cut(s)	47, 186
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	26, 285, 306
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	4 cut(s)	163, 174, 287, 314
HapII	CCGG	1 cut(s)	175
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	184, 389
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	11, 97, 412
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	92, 140
Hpy166II	GTNNAC	2 cut(s)	139, 358
Hpy188I	TCNGA	2 cut(s)	225, 411
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	139, 358
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	221, 362
HpyCH4V	TGCA	2 cut(s)	320, 358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 268, 311, 382
HpyF3I	CTNAG	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	184, 389
HspAI	GCGC	1 cut(s)	214
KasI	GGCGCC	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	2 cut(s)	188, 386
MaeI	CTAG	2 cut(s)	47, 186
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	360, 395
MluCI	AATT	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	81, 159, 234, 276, 303
MroNI	GCCGGC	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	175, 268, 311, 382
NaeI	GCCGGC	1 cut(s)	176
NarI	GGCGCC	1 cut(s)	214
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	184, 389
NlaIV	GGNNCC	2 cut(s)	215, 245
NmeAIII	GCCGAG	1 cut(s)	189
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PctI	GAATGC	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	11, 97
PflMI	CCANNNNNTGG	2 cut(s)	331, 379
PkrI	GCNGC	3 cut(s)	27, 286, 307
Ple19I	CGATCG	1 cut(s)	117
PluTI	GGCGCC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	215, 245
PspPI	GGNCC	2 cut(s)	243, 312
PspPPI	RGGWCCY	1 cut(s)	243
PvuI	CGATCG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	398
SatI	GCNGC	3 cut(s)	26, 285, 306
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	2 cut(s)	243, 312
SduI	GDGCHC	2 cut(s)	360, 395
SetI	ASST	5 cut(s)	52, 82, 191, 245, 268
SfoI	GGCGCC	1 cut(s)	215
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	6 cut(s)	25, 254, 269, 284, 305, 341
SspDI	GGCGCC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	47, 186
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	221, 362
TaqI	TCGA	2 cut(s)	9, 113
TasI	AATT	1 cut(s)	290
TauI	GCSGC	3 cut(s)	28, 287, 308
TfiI	GAWTC	2 cut(s)	11, 97
TspDTI	ATGAA	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	4
Van91I	CCANNNNNTGG	2 cut(s)	331, 379
VneI	GTGCAC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	389
XmaJI	CCTAGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	2 cut(s)	47, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.