Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001671

Physical Location & Seq

Genomic Coordinates Reverse (-)

46756598 .. 46763396

Gene Structure 6799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAAAAGTTGCAGAATGAAGTCAAAGGAATAGCCGGAAGCAAAAAAGACATAACAGAAGATGGATTTGAGAAAATGCACTACTTGAAGGCAGGGATCAAGGAGACGCTTCGTTTACATCTTTCAACAGCACTACTATTTCCAAGTTTGATGGGCTCCAGCTCCAGCCTCGCCTTCGTCCGATTGAGAAGTCTTCAATTTCTGGTATCGAGCTCGTCAGCCTCACCTTCAAGTCTTCAATTGGTTGCCTTCGAGCGGAAGCTTTTGACAAACAGCTATTCTGGGTTAGCTCATGAACTCTCTAACAATGCCAAATTCGAGAGATTTCCACACCCCGCGAATTTTGGCTCAAGAGCTCTGTCAGTTGATGCTGTTCAAGTTACTAATGGAGATGCAAGCAAAGGAGGGCCACTTGTTGAGTATGAGCGAAGAATTGCTGCGGGCGAACTTGTTGATGGTGATGCCTGCCAGGTAAGCACCTTAACAGAACTTCAAAGGCTATATGATGAACTTGTTCAGTCAGCTGATGCCTGCCGGCTGGATAGATATACAACTTCGAGGAAATCTGGAAGGAGTAGATGGTTGTGGTCTCGTTTCATCCCACAGTCTTCAAATGCCTCCCCTGTTAAAGGTCTTTATCTTTATGGAGGAGTGGGAACTGGAAAAACCATGTTGATGGACTTGTTTTTCGATCAACTGTTAGTCACCAATACAATGCAATTGGAGGAAAAAGAGGATTCATTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFG1_ATPase

Protein Analysis

249

Amino Acids

27.51

Weight (kDa)

7.75

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 44	1.1e-07	Cytochrome P450
AFG1_ATPase	PF03969	138 - 236	1.4e-13	AFG1-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28070 AT4G28070 AT4G30490
fragaria_vesca	FvH4_4g08720 FvH4_4g08720
malus_domestica	MD13G1275200.v1.1 MD16G1260700.v1.1
prunus_persica	Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1
pyrus_communis	pycom13g28650 pycom16g22820
rosa_chinensis	RchiOBHm_Chr2g0167931 RchiOBHm_Chr4g0405201 RchiOBHm_Chr6g0283891
rosa_laevigata	RLG00000008864
rosa_multiflora	Rmu_sc0000555.1_g000029 Rmu_sc0002500.1_g000005 Rmu_ssc0000255.1_g000022
rosa_roxburghii	Rroxscaffold_1G00033980 Rroxscaffold_2G00108990 Rroxscaffold_3G00223720 Rroxscaffold_5G00344940 Rroxscaffold_5G00349450 Rroxscaffold_6G00399190 Rroxscaffold_7G00214630
rosa_rugosa	Rorug04G0054800 Rorug04G0054900
rosa_samantha	Rh1AG171300 Rh2BG612400 Rh4AG129700 Rh4AG188200 Rh4BG123600 Rh4CG137000 Rh4DG123200 Rh4DG173800 Rh4DG239400 Rh7DG352600
rosa_wichuraiana	Rw4G002430 Rw4G010480 Rw4G026910 Rw7G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AccII	CGCG	1 cut(s)	338
AciI	CCGC	3 cut(s)	256, 336, 440
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	314, 340
AfiI	CCNNNNNNNGG	2 cut(s)	255, 629
AgsI	TTSAA	8 cut(s)	88, 126, 197, 231, 239, 377, 494, 612
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	7 cut(s)	162, 213, 262, 276, 290, 356, 524
AluI	AGCT	7 cut(s)	162, 213, 262, 276, 290, 356, 524
Alw21I	GWGCWC	2 cut(s)	215, 358
Alw26I	GTCTC	2 cut(s)	98, 594
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	314, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
Asp700I	GAANNNNTTC	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	3 cut(s)	216, 470, 697
BanII	GRGCYC	3 cut(s)	158, 215, 358
BbsI	GAAGAC	3 cut(s)	185, 227, 600
Bbv12I	GWGCWC	2 cut(s)	215, 358
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	5 cut(s)	56, 145, 449, 573, 670
BciT130I	CCWGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	98, 594
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	4 cut(s)	358, 382, 451, 517
BpiI	GAAGAC	3 cut(s)	185, 227, 600
BpmI	CTGGAG	2 cut(s)	142, 148
BpuEI	CTTGAG	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 629
Bse118I	RCCGGY	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	255, 629
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	1 cut(s)	663
BseXI	GCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	215, 358
BsiSI	CCGG	2 cut(s)	36, 535
BslI	CCNNNNNNNGG	2 cut(s)	255, 629
BsmAI	GTCTC	2 cut(s)	98, 594
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	409
Bso31I	GGTCTC	1 cut(s)	594
Bsp1286I	GDGCHC	3 cut(s)	158, 215, 358
Bsp143I	GATC	2 cut(s)	96, 691
BspACI	CCGC	3 cut(s)	256, 336, 440
BspANI	GGCC	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	338
BspHI	TCATGA	2 cut(s)	292, 746
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	534
BssMI	GATC	2 cut(s)	96, 691
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	2 cut(s)	606, 699
BstC8I	GCNNGC	5 cut(s)	397, 442, 466, 532, 536
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	99, 694
BstMAI	GTCTC	2 cut(s)	98, 594
BstMBI	GATC	2 cut(s)	96, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	3 cut(s)	185, 227, 600
BstXI	CCANNNNNNTGG	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	597
Cac8I	GCNNGC	5 cut(s)	397, 442, 466, 532, 536
CciI	TCATGA	2 cut(s)	292, 746
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	1 cut(s)	407
CseI	GACGC	1 cut(s)	115
CviAII	CATG	3 cut(s)	293, 670, 747
DpnI	GATC	2 cut(s)	98, 693
DpnII	GATC	2 cut(s)	96, 691
Ecl136II	GAGCTC	2 cut(s)	213, 356
Eco24I	GRGCYC	3 cut(s)	158, 215, 358
Eco31I	GGTCTC	1 cut(s)	594
Eco53kI	GAGCTC	2 cut(s)	213, 356
EcoICRI	GAGCTC	2 cut(s)	213, 356
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	468
EcoT38I	GRGCYC	3 cut(s)	158, 215, 358
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	296, 673, 750
FaiI	YATR	9 cut(s)	53, 294, 423, 502, 504, 549, 645, 671, 748
FatI	CATG	3 cut(s)	292, 669, 746
FauI	CCCGC	2 cut(s)	343, 433
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	3 cut(s)	158, 215, 358
Fsp4HI	GCNGC	1 cut(s)	438
GluI	GCNGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	142, 148
HaeIII	GGCC	1 cut(s)	409
HapII	CCGG	2 cut(s)	36, 535
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	296, 673, 750
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	737
HpaII	CCGG	2 cut(s)	36, 535
HphI	GGTGA	3 cut(s)	216, 470, 697
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	5 cut(s)	293, 319, 351, 567, 747
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	5 cut(s)	82, 184, 237, 259, 564
HpyCH4III	ACNGT	2 cut(s)	606, 699
HpyCH4V	TGCA	4 cut(s)	13, 79, 395, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	296, 673, 750
KroI	GCCGGC	1 cut(s)	534
KroNI	GCCGGC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	96, 691
LmnI	GCTCC	2 cut(s)	161, 167
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	4 cut(s)	358, 382, 451, 517
MaeIII	GTNAC	2 cut(s)	379, 703
MalI	GATC	2 cut(s)	98, 693
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	2 cut(s)	96, 691
MboII	GAAGA	5 cut(s)	71, 185, 227, 441, 600
MfeI	CAATTG	2 cut(s)	239, 719
MhlI	GDGCHC	3 cut(s)	158, 215, 358
MluCI	AATT	6 cut(s)	197, 239, 314, 340, 432, 719
MnlI	CCTC	8 cut(s)	179, 232, 398, 552, 628, 641, 718, 727
MroNI	GCCGGC	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	513
MseI	TTAA	2 cut(s)	482, 627
MslI	CAYNNNNRTG	2 cut(s)	674, 745
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	2 cut(s)	36, 535
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	2 cut(s)	239, 719
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	474
NaeI	GCCGGC	1 cut(s)	536
NdeII	GATC	2 cut(s)	96, 691
NgoMIV	GCCGGC	1 cut(s)	534
NlaIII	CATG	3 cut(s)	296, 673, 750
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	703
PagI	TCATGA	2 cut(s)	292, 746
PdiI	GCCGGC	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	737
PkrI	GCNGC	1 cut(s)	439
Psp124BI	GAGCTC	2 cut(s)	215, 358
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	524
RseI	CAYNNNNRTG	2 cut(s)	674, 745
SacI	GAGCTC	2 cut(s)	215, 358
SaqAI	TTAA	2 cut(s)	482, 627
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	96, 691
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	3 cut(s)	158, 215, 358
SfaNI	GCATC	4 cut(s)	358, 382, 451, 517
SmiMI	CAYNNNNRTG	2 cut(s)	674, 745
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	6 cut(s)	197, 239, 314, 340, 432, 719
SsiI	CCGC	3 cut(s)	256, 336, 440
SstI	GAGCTC	2 cut(s)	215, 358
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	606, 699
TaqI	TCGA	5 cut(s)	209, 252, 318, 557, 690
TasI	AATT	6 cut(s)	197, 239, 314, 340, 432, 719
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	2 cut(s)	482, 627
Tru9I	TTAA	2 cut(s)	482, 627
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	6 cut(s)	33, 309, 522, 586, 729, 735
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	314, 340
XmnI	GAANNNNTTC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.