Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001671

Physical Location & Seq

Genomic Coordinates Reverse (-)

32814989 .. 32819099

Gene Structure 4111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG171300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCTGCTTAGATACTTTCAAAGACCAGCAGGGCTATGAAGAAGAAAAGAACCAAACGATGACAGAAACTTGTACGATGGATGGAGCCGTTGATTGGAATGGCCGCCCTGCAATCCGAGGGAGAACTGGTTCTTGGGTTGCTGCAATTCTCATATTAGCTCATGAACTCTCTAACAATGCCAAATTCGAGAGATTTCCACACCCCGCGAATTTTGGCTCAAGAGCTCTGTCAGTTGATGCTGTTCAAGTTACTAATGGAGATGCAAGCAAAGGAGGGCCACTTGTTGAGTATGAGCGAAGAATTGCTGCGGGCGAACTTGTTGATGGTGATGCCTGCCAGGTAAGCACCTTAACAGAACTTCAAAGGCTATATGATGAACTTGTTCAGTCAGCTGATGCCTGCCGGCTGGATAGATATACAACTTCGAGGAAATCTGGAAGGAGTAGATGGTTGTGGTCTCGTTTCATCCCACAGTCTTCAAATGCCTCCCCTGTTAAAGGTCTTTATCTTTATGGAGGAGTGCGAACTGGAAAAACCATGTTGATGGACTTGTTTTTCGATCAACTACAATGCAATTGGAGGAAAAAGAGGATTCATTTTCATGATTTTATGTTGAATGTCCACAGCTGCTTGCGAAAGCACCAGGGTGTAGAAGACCCTCTTGAAGTTGTTGCAGGAGAGATAACTGATGAGGCAGTCTTGTTATGTCTTGATGAATTCATGAGATGGCAGCTAAGAATCCGAAAAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFG1_ATPase

Protein Analysis

252

Amino Acids

28.68

Weight (kDa)

6.11

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AFG1_ATPase	PF03969	95 - 241	3.1e-29	AFG1-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28070 AT4G28070 AT4G30490
fragaria_vesca	FvH4_4g08720 FvH4_4g08720
malus_domestica	MD13G1275200.v1.1 MD16G1260700.v1.1
prunus_persica	Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1
pyrus_communis	pycom13g28650 pycom16g22820
rosa_chinensis	RchiOBHm_Chr2g0167931 RchiOBHm_Chr4g0405201 RchiOBHm_Chr6g0283891
rosa_laevigata	RLG00000008864
rosa_multiflora	Rmu_sc0000555.1_g000029 Rmu_sc0002500.1_g000005 Rmu_ssc0000255.1_g000022
rosa_roxburghii	Rroxscaffold_1G00033980 Rroxscaffold_2G00108990 Rroxscaffold_3G00223720 Rroxscaffold_5G00344940 Rroxscaffold_5G00349450 Rroxscaffold_6G00399190 Rroxscaffold_7G00214630
rosa_rugosa	Rorug04G0054800 Rorug04G0054900
rosa_samantha	Rh1AG171300 Rh2BG612400 Rh4AG129700 Rh4AG188200 Rh4BG123600 Rh4CG137000 Rh4DG123200 Rh4DG173800 Rh4DG239400 Rh7DG352600
rosa_wichuraiana	Rw4G002430 Rw4G010480 Rw4G026910 Rw7G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	209
AciI	CCGC	3 cut(s)	106, 207, 311
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	3 cut(s)	185, 211, 719
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	3 cut(s)	96, 500, 751
AgsI	TTSAA	6 cut(s)	22, 248, 365, 483, 619, 668
AjnI	CCWGG	2 cut(s)	339, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AleI	CACNNNNGTG	1 cut(s)	648
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
AluBI	AGCT	5 cut(s)	161, 227, 395, 630, 736
AluI	AGCT	5 cut(s)	161, 227, 395, 630, 736
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	465
AoxI	GGCC	3 cut(s)	3, 103, 278
ApeKI	GCWGC	4 cut(s)	143, 308, 630, 733
ApoI	RAATTY	3 cut(s)	185, 211, 719
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
Asp700I	GAANNNNTTC	2 cut(s)	130, 384
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	471, 663
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	4 cut(s)	130, 295, 617, 745
BccI	CCATC	6 cut(s)	73, 77, 320, 444, 541, 723
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	341, 647
BcoDI	GTCTC	1 cut(s)	465
BisI	GCNGC	5 cut(s)	106, 144, 309, 631, 734
BlsI	GCNGC	5 cut(s)	107, 145, 310, 632, 735
Bme1390I	CCNGG	2 cut(s)	341, 647
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	341, 647
BmsI	GCATC	4 cut(s)	229, 253, 322, 388
BpiI	GAAGAC	2 cut(s)	471, 663
BpuEI	CTTGAG	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	118, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 500, 751
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	2 cut(s)	133, 535
BseBI	CCWGG	2 cut(s)	341, 647
BseDI	CCNNGG	2 cut(s)	118, 646
BseGI	GGATG	2 cut(s)	88, 468
BseLI	CCNNNNNNNGG	3 cut(s)	96, 500, 751
BseNI	ACTGG	2 cut(s)	133, 535
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	4 cut(s)	130, 295, 617, 745
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	5, 105, 280
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	406
BslI	CCNNNNNNNGG	3 cut(s)	96, 500, 751
BsmAI	GTCTC	1 cut(s)	465
BsnI	GGCC	3 cut(s)	5, 105, 280
Bso31I	GGTCTC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	562
BspACI	CCGC	3 cut(s)	106, 207, 311
BspANI	GGCC	3 cut(s)	5, 105, 280
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	3 cut(s)	163, 604, 723
BspLI	GGNNCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	133, 535
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	118, 646
BssMI	GATC	1 cut(s)	562
Bst2UI	CCWGG	2 cut(s)	341, 647
Bst4CI	ACNGT	1 cut(s)	477
BstC8I	GCNNGC	7 cut(s)	7, 268, 313, 337, 403, 407, 635
BstDEI	CTNAG	2 cut(s)	10, 737
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	88, 468
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	2 cut(s)	341, 647
BstSCI	CCNGG	2 cut(s)	339, 645
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	4 cut(s)	130, 295, 617, 745
BstV2I	GAAGAC	2 cut(s)	471, 663
BstXI	CCANNNNNNTGG	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	5, 105, 280
BtsCI	GGATG	2 cut(s)	88, 468
Cac8I	GCNNGC	7 cut(s)	7, 268, 313, 337, 403, 407, 635
CciI	TCATGA	3 cut(s)	163, 604, 723
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	4 cut(s)	164, 541, 605, 724
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	2 cut(s)	10, 737
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	719
EcoRII	CCWGG	2 cut(s)	339, 645
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	4 cut(s)	167, 544, 608, 727
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FatI	CATG	4 cut(s)	163, 540, 604, 723
FauI	CCCGC	2 cut(s)	214, 304
Fnu4HI	GCNGC	5 cut(s)	106, 144, 309, 631, 734
FokI	GGATG	2 cut(s)	95, 455
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	5 cut(s)	106, 144, 309, 631, 734
GluI	GCNGC	5 cut(s)	106, 144, 309, 631, 734
HaeIII	GGCC	3 cut(s)	5, 105, 280
HapII	CCGG	1 cut(s)	406
Hin1II	CATG	4 cut(s)	167, 544, 608, 727
HinfI	GANTC	2 cut(s)	595, 741
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	2 cut(s)	119, 746
Hpy188III	TCNNGA	8 cut(s)	164, 190, 222, 438, 605, 665, 713, 724
Hpy8I	GTNNAC	1 cut(s)	625
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4V	TGCA	5 cut(s)	113, 146, 266, 576, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	2 cut(s)	10, 737
Hsp92II	CATG	4 cut(s)	167, 544, 608, 727
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	4 cut(s)	130, 295, 617, 745
LweI	GCATC	4 cut(s)	229, 253, 322, 388
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	5 cut(s)	53, 56, 312, 471, 668
MfeI	CAATTG	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	6 cut(s)	147, 185, 211, 303, 577, 719
MroNI	GCCGGC	1 cut(s)	405
MroXI	GAANNNNTTC	2 cut(s)	130, 384
MseI	TTAA	2 cut(s)	353, 498
MslI	CAYNNNNRTG	3 cut(s)	545, 603, 648
MspA1I	CMGCKG	2 cut(s)	395, 630
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	341, 647
MunI	CAATTG	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	341, 647
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	345
NaeI	GCCGGC	1 cut(s)	407
NdeII	GATC	1 cut(s)	562
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	4 cut(s)	167, 544, 608, 727
NlaIV	GGNNCC	1 cut(s)	88
OliI	CACNNNNGTG	1 cut(s)	648
PagI	TCATGA	3 cut(s)	163, 604, 723
PdiI	GCCGGC	1 cut(s)	407
PdmI	GAANNNNTTC	2 cut(s)	130, 384
PfeI	GAWTC	2 cut(s)	595, 741
PkrI	GCNGC	5 cut(s)	107, 145, 310, 632, 735
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	339, 645
PspGI	CCWGG	2 cut(s)	339, 645
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	278
PvuII	CAGCTG	2 cut(s)	395, 630
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	3 cut(s)	545, 603, 648
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	353, 498
SatI	GCNGC	5 cut(s)	106, 144, 309, 631, 734
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	341, 647
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	8 cut(s)	163, 229, 345, 353, 397, 505, 632, 738
SfaNI	GCATC	4 cut(s)	229, 253, 322, 388
SmiMI	CAYNNNNRTG	3 cut(s)	545, 603, 648
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	6 cut(s)	147, 185, 211, 303, 577, 719
SsiI	CCGC	3 cut(s)	106, 207, 311
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	339, 645
TaaI	ACNGT	1 cut(s)	477
TaqI	TCGA	3 cut(s)	189, 428, 561
TasI	AATT	6 cut(s)	147, 185, 211, 303, 577, 719
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	595, 741
Tru1I	TTAA	2 cut(s)	353, 498
Tru9I	TTAA	2 cut(s)	353, 498
TseI	GCWGC	4 cut(s)	143, 308, 630, 733
TspDTI	ATGAA	8 cut(s)	54, 180, 393, 457, 587, 593, 712, 732
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	3 cut(s)	185, 211, 719
XmnI	GAANNNNTTC	2 cut(s)	130, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.