Rh2BG612400

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001671
Physical Location & Seq
Forward (+)
83360957 .. 83367187
6231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG612400.1

Sequence Viewer

Length: 651 bp
ATGGTTTTGGCAGCTTGGCGGAAGCTTTTGACAAACAGCTATTCTGGGTTAGCTCATGAACTCTCTAACAATGCCAAATTCGATAGATTTTCACACCCCGCGAATTTTGGCTCAAGAGCTCTGTCAGTTGATGCTGTTCAAGTTACTAATGGAGATGCAAGCAAAGGAGGGCCACTTGTTGAGTATGAGCGAAGAATTGCTGTGGGCGAACTTGTTGATGGTGATGCCTGCCAGGTAAGCACATTAACAGAACTTCAAAGGCTATATGATGAACTTGTTCAGTCAGCTGATGCCTGCCGGCTGGATAGATATACAACTTCGAGGAAATCTGGAAGGAGTAGATGGTTGTGGTCTCGTTTCATCCCACAGTCTTCAAATGCCTCCCCTGTTAAAGGTCTTTATCTTTATGGAGGAGTGGGAACTGGAAAAACTATGTTGATGGACTTGTTTTTCGATCAACTACAATGCAATTGGAGGAAAAAGAGGATTCATTTTCATGATTTTATGTTGAATGTCCACAGCTGCTTGCGAAAGCACCAGGGTGTAGAAGACCCTCTTGAAGTTGTTGCAGGAGAGATAACTGATGAGGCAGTCTTGTTATGTCTTGATGAATTCATGAGATGGCAGCTAAGAATCCGAAAAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

216

Amino Acids

24.59

Weight (kDa)

7.68

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AFG1_ATPase PF03969 59 - 205 6.9e-31 AFG1-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 19, 99
AcsI RAATTY 3 cut(s) 77, 103, 611
AfiI CCNNNNNNNGG 2 cut(s) 392, 643
AgsI TTSAA 5 cut(s) 140, 257, 375, 511, 560
AjnI CCWGG 2 cut(s) 231, 537
AleI CACNNNNGTG 1 cut(s) 540
AluBI AGCT 8 cut(s) 14, 25, 39, 53, 119, 287, 522, 628
AluI AGCT 8 cut(s) 14, 25, 39, 53, 119, 287, 522, 628
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 357
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 3 cut(s) 11, 522, 625
ApoI RAATTY 3 cut(s) 77, 103, 611
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 233
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 2 cut(s) 363, 555
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 3 cut(s) 23, 509, 637
BccI CCATC 4 cut(s) 212, 336, 433, 615
BciT130I CCWGG 2 cut(s) 233, 539
BcoDI GTCTC 1 cut(s) 357
BisI GCNGC 3 cut(s) 12, 523, 626
BlsI GCNGC 3 cut(s) 13, 524, 627
Bme1390I CCNGG 2 cut(s) 233, 539
BmgT120I GGNCC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 233, 539
BmsI GCATC 4 cut(s) 121, 145, 214, 280
BpiI GAAGAC 2 cut(s) 363, 555
BpuEI CTTGAG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 538
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 643
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 427
BseBI CCWGG 2 cut(s) 233, 539
BseDI CCNNGG 1 cut(s) 538
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 392, 643
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 3 cut(s) 23, 509, 637
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 392, 643
BsmAI GTCTC 1 cut(s) 357
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 2 cut(s) 19, 99
BspANI GGCC 1 cut(s) 172
BspFNI CGCG 1 cut(s) 101
BspHI TCATGA 3 cut(s) 55, 496, 615
BspTNI GGTCTC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 1 cut(s) 454
Bst2UI CCWGG 2 cut(s) 233, 539
Bst4CI ACNGT 1 cut(s) 369
BstC8I GCNNGC 5 cut(s) 160, 229, 295, 299, 527
BstDEI CTNAG 1 cut(s) 629
BstENI CCTNNNNNAGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 2 cut(s) 233, 539
BstSCI CCNGG 2 cut(s) 231, 537
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 23, 509, 637
BstV2I GAAGAC 2 cut(s) 363, 555
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 360
Cac8I GCNNGC 5 cut(s) 160, 229, 295, 299, 527
CciI TCATGA 3 cut(s) 55, 496, 615
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 3 cut(s) 56, 497, 616
DdeI CTNAG 1 cut(s) 629
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
EciI GGCGGA 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 119
EcoNI CCTNNNNNAGG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 231, 537
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 3 cut(s) 59, 500, 619
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FatI CATG 3 cut(s) 55, 496, 615
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 12, 523, 626
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 3 cut(s) 12, 523, 626
GluI GCNGC 3 cut(s) 12, 523, 626
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 298
Hin1II CATG 3 cut(s) 59, 500, 619
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 487, 633
HpaII CCGG 1 cut(s) 298
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 1 cut(s) 638
Hpy188III TCNNGA 7 cut(s) 56, 114, 330, 497, 557, 605, 616
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 158, 468, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 629
Hsp92II CATG 3 cut(s) 59, 500, 619
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 454
Lsp1109I GCAGC 3 cut(s) 23, 509, 637
LweI GCATC 4 cut(s) 121, 145, 214, 280
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 3 cut(s) 204, 363, 560
MfeI CAATTG 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 5 cut(s) 77, 103, 195, 469, 611
MnlI CCTC 9 cut(s) 161, 315, 391, 404, 468, 477, 564, 580, 637
MroNI GCCGGC 1 cut(s) 297
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 2 cut(s) 245, 390
MslI CAYNNNNRTG 2 cut(s) 495, 540
MspA1I CMGCKG 2 cut(s) 287, 522
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 2 cut(s) 233, 539
MunI CAATTG 1 cut(s) 469
MvaI CCWGG 2 cut(s) 233, 539
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 237
NaeI GCCGGC 1 cut(s) 299
NdeII GATC 1 cut(s) 454
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 3 cut(s) 59, 500, 619
OliI CACNNNNGTG 1 cut(s) 540
PagI TCATGA 3 cut(s) 55, 496, 615
PdiI GCCGGC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 487, 633
PkrI GCNGC 3 cut(s) 13, 524, 627
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 231, 537
PspGI CCWGG 2 cut(s) 231, 537
PspPI GGNCC 1 cut(s) 170
PvuII CAGCTG 2 cut(s) 287, 522
RseI CAYNNNNRTG 2 cut(s) 495, 540
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 2 cut(s) 245, 390
SatI GCNGC 3 cut(s) 12, 523, 626
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 233, 539
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 4 cut(s) 121, 145, 214, 280
SmiMI CAYNNNNRTG 2 cut(s) 495, 540
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 5 cut(s) 77, 103, 195, 469, 611
SsiI CCGC 2 cut(s) 19, 99
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 231, 537
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 3 cut(s) 81, 320, 453
TasI AATT 5 cut(s) 77, 103, 195, 469, 611
TfiI GAWTC 2 cut(s) 487, 633
Tru1I TTAA 2 cut(s) 245, 390
Tru9I TTAA 2 cut(s) 245, 390
TseI GCWGC 3 cut(s) 11, 522, 625
TspDTI ATGAA 7 cut(s) 72, 285, 349, 479, 485, 604, 624
XagI CCTNNNNNAGG 1 cut(s) 390
XapI RAATTY 3 cut(s) 77, 103, 611
XmnI GAANNNNTTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.