Rw4G002430

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001671
Physical Location & Seq
Reverse (-)
4822999 .. 4824542
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002430.1

Sequence Viewer

Length: 381 bp
ATGAGAGCAATTACTCGTTCAATCCAGCAATTTAGATCAGCTCTGCGGCGGCAAACATGTAATTACTCCACTGGTTTTGTGAGAAGGCGGAAGCTTTTGACAAACAGCTATTCTGGGTTAGCTCATGAACTCTCTAACAATGCCAAATTCGATAGATTTCCACACCCCGCGAATTTTGGCTCAAGAGCTCTGTCAGTTGATGCTGTTCAAGTTACTAATGGAGATGCAAGCAAAGGAGGGCCACTTGTTGAGTATGAGCGAAGAATTGCTGCGGGCGAACTTGTTGATGGTGATGCCTGCCAGAAGCACCAGGGTGTAGAAGACCCTCTTGAAGTTGTTGCAGGAGAGATATCTGATGAGGCAGTCTTGATTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

126

Amino Acids

13.89

Weight (kDa)

7.83

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 170
AciI CCGC 5 cut(s) 46, 49, 88, 168, 272
AcsI RAATTY 2 cut(s) 146, 172
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 3 cut(s) 21, 209, 332
AjnI CCWGG 1 cut(s) 309
AleI CACNNNNGTG 1 cut(s) 312
AluBI AGCT 5 cut(s) 41, 94, 108, 122, 188
AluI AGCT 5 cut(s) 41, 94, 108, 122, 188
Alw21I GWGCWC 1 cut(s) 190
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 2 cut(s) 146, 172
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 302
BanII GRGCYC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 311
BisI GCNGC 3 cut(s) 47, 50, 270
BlsI GCNGC 3 cut(s) 48, 51, 271
Bme1390I CCNGG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 190, 214, 283
BpiI GAAGAC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 190
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 5 cut(s) 46, 49, 88, 168, 272
BspANI GGCC 1 cut(s) 241
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 1 cut(s) 124
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 229, 274, 298
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 309
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 229, 274, 298
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 3 cut(s) 57, 125, 375
CviJI RGCY 7 cut(s) 41, 94, 108, 122, 180, 188, 241
CviKI_1 RGCY 7 cut(s) 41, 94, 108, 122, 180, 188, 241
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 309
EcoRV GATATC 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 190
FaeI CATG 3 cut(s) 60, 128, 378
FaiI YATR 4 cut(s) 58, 126, 255, 376
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 3 cut(s) 56, 124, 374
FauI CCCGC 2 cut(s) 175, 265
Fnu4HI GCNGC 3 cut(s) 47, 50, 270
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 47, 50, 270
GluI GCNGC 3 cut(s) 47, 50, 270
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 3 cut(s) 60, 128, 378
HindIII AAGCTT 1 cut(s) 92
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 4 cut(s) 125, 183, 329, 367
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 227, 341
Hsp92II CATG 3 cut(s) 60, 128, 378
Kzo9I GATC 1 cut(s) 35
LpnPI CCDG 8 cut(s) 38, 57, 99, 296, 310, 314, 323, 327
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 3 cut(s) 190, 214, 283
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 2 cut(s) 273, 332
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 6 cut(s) 9, 29, 61, 146, 172, 264
MnlI CCTC 3 cut(s) 230, 336, 352
MslI CAYNNNNRTG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 170
NdeII GATC 1 cut(s) 35
NlaIII CATG 3 cut(s) 60, 128, 378
NspI RCATGY 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 312
PagI TCATGA 1 cut(s) 124
PciI ACATGT 1 cut(s) 56
PkrI GCNGC 3 cut(s) 48, 51, 271
PscI ACATGT 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspPI GGNCC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 190
SatI GCNGC 3 cut(s) 47, 50, 270
Sau3AI GATC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 190
SetI ASST 5 cut(s) 43, 96, 110, 124, 190
SfaNI GCATC 3 cut(s) 190, 214, 283
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 6 cut(s) 9, 29, 61, 146, 172, 264
SsiI CCGC 5 cut(s) 46, 49, 88, 168, 272
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 309
TaqI TCGA 1 cut(s) 150
TasI AATT 6 cut(s) 9, 29, 61, 146, 172, 264
TauI GCSGC 2 cut(s) 49, 52
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 141, 363
TspRI CASTG 1 cut(s) 76
XapI RAATTY 2 cut(s) 146, 172
XceI RCATGY 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.