Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000555.1

Orthogroup ID

OG0001671

Physical Location & Seq

Genomic Coordinates Forward (+)

117218 .. 117904

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000555.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggcgaccggtatcggcctccctctacgtcatctgctgataacacttagaagccgaccttgtgcggcgaccaccctaccttgctctaggtttctcatcatctctggccggaaggaaataggtgatgtgagggttatggatcggtgctctggtccgatcagaatcaatggggattgggtggaagaatggccgtgtcgaatcaggccgaggcgaggccggctcaagtttgggtggttcacagtcgggaacgaccaacgcatacggtctggaagccaagagatgagaggtcctcggttgtgcgacctctggacccggatccaaaccgccaaactccgattgatggcggcgccgacctttgtactccaacttatggatgtggcggagattgtcgtcgtgcaccgtgaagtgaatcaggttttggaatatgcagagcacgctggtggggtgtctgagttgatggcggtggctgcatccggactggtagcgacggcgtcggacgtgcttggcagtggagtgtataggtactctcagatgtttgagatgcaaacacaaaatctttgccctactgggcatttttctatatcattccagctgcctggtccagttaatccccagcagttttctggtaattttggcactgacggaatccttgaaggagttgtgatgaaacgcttagatgtgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

228

Amino Acids

25.34

Weight (kDa)

9.41

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28070 AT4G28070 AT4G30490
fragaria_vesca	FvH4_4g08720 FvH4_4g08720
malus_domestica	MD13G1275200.v1.1 MD16G1260700.v1.1
prunus_persica	Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1
pyrus_communis	pycom13g28650 pycom16g22820
rosa_chinensis	RchiOBHm_Chr2g0167931 RchiOBHm_Chr4g0405201 RchiOBHm_Chr6g0283891
rosa_laevigata	RLG00000008864
rosa_multiflora	Rmu_sc0000555.1_g000029 Rmu_sc0002500.1_g000005 Rmu_ssc0000255.1_g000022
rosa_roxburghii	Rroxscaffold_1G00033980 Rroxscaffold_2G00108990 Rroxscaffold_3G00223720 Rroxscaffold_5G00344940 Rroxscaffold_5G00349450 Rroxscaffold_6G00399190 Rroxscaffold_7G00214630
rosa_rugosa	Rorug04G0054800 Rorug04G0054900
rosa_samantha	Rh1AG171300 Rh2BG612400 Rh4AG129700 Rh4AG188200 Rh4BG123600 Rh4CG137000 Rh4DG123200 Rh4DG173800 Rh4DG239400 Rh7DG352600
rosa_wichuraiana	Rw4G002430 Rw4G010480 Rw4G026910 Rw7G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	5 cut(s)	65, 324, 344, 380, 461
AclWI	GGATC	3 cut(s)	147, 310, 323
AcoI	YGGCCR	2 cut(s)	106, 188
AcyI	GRCGYC	2 cut(s)	347, 491
AfaI	GTAC	2 cut(s)	360, 524
AfiI	CCNNNNNNNGG	3 cut(s)	212, 340, 370
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AleI	CACNNNNGTG	1 cut(s)	438
AluBI	AGCT	1 cut(s)	592
AluI	AGCT	1 cut(s)	592
Alw21I	GWGCWC	3 cut(s)	149, 399, 435
Alw44I	GTGCAC	1 cut(s)	395
AlwI	GGATC	3 cut(s)	147, 310, 323
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	5 cut(s)	16, 106, 188, 203, 214
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	467, 592
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	4 cut(s)	152, 287, 309, 599
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	4 cut(s)	152, 287, 309, 599
BaeGI	GKGCMC	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	346
Bbv12I	GWGCWC	3 cut(s)	149, 399, 435
BbvI	GCAGC	2 cut(s)	454, 579
BccI	CCATC	2 cut(s)	334, 451
BceAI	ACGGC	2 cut(s)	175, 504
BciT130I	CCWGG	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	313
BfaI	CTAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	4 cut(s)	66, 345, 468, 593
BlsI	GCNGC	4 cut(s)	67, 346, 469, 594
Bme1390I	CCNGG	2 cut(s)	313, 597
Bme18I	GGWCC	4 cut(s)	152, 287, 309, 599
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	152, 287, 309, 599
BmiI	GGNNCC	3 cut(s)	311, 317, 348
BmrFI	CCNGG	2 cut(s)	313, 597
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	479, 531
BmuI	ACTGGG	1 cut(s)	576
BplI	GAGNNNNNCTC	4 cut(s)	204, 236, 274, 306
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	161
BsaHI	GRCGYC	2 cut(s)	347, 491
BsaJI	CCNNGG	2 cut(s)	206, 290
BsaWI	WCCGGW	2 cut(s)	8, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 340, 370
Bse118I	RCCGGY	2 cut(s)	8, 216
Bse1I	ACTGG	3 cut(s)	483, 571, 602
Bse8I	GATNNNNATC	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	206, 290
BseGI	GGATG	2 cut(s)	379, 470
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	3 cut(s)	212, 340, 370
BseMII	CTCAG	2 cut(s)	441, 542
BseNI	ACTGG	3 cut(s)	483, 571, 602
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	2 cut(s)	454, 579
BseYI	CCCAGC	1 cut(s)	612
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	18, 108, 190, 205, 216
BshNI	GGYRCC	1 cut(s)	346
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	3 cut(s)	149, 399, 435
BsiSI	CCGG	5 cut(s)	9, 109, 217, 313, 474
BslI	CCNNNNNNNGG	3 cut(s)	212, 340, 370
BsnI	GGCC	5 cut(s)	18, 108, 190, 205, 216
Bsp1286I	GDGCHC	3 cut(s)	149, 399, 435
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	139, 156, 315
BspACI	CCGC	5 cut(s)	65, 324, 344, 380, 461
BspANI	GGCC	5 cut(s)	18, 108, 190, 205, 216
BspCNI	CTCAG	2 cut(s)	442, 541
BspEI	TCCGGA	1 cut(s)	473
BspLI	GGNNCC	3 cut(s)	311, 317, 348
BspPI	GGATC	3 cut(s)	147, 310, 323
BspT107I	GGYRCC	1 cut(s)	346
BsrFI	RCCGGY	2 cut(s)	8, 216
BsrI	ACTGG	3 cut(s)	483, 571, 602
BssAI	RCCGGY	2 cut(s)	8, 216
BssECI	CCNNGG	2 cut(s)	206, 290
BssMI	GATC	3 cut(s)	139, 156, 315
BssNI	GRCGYC	2 cut(s)	347, 491
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	241, 264, 401
BstACI	GRCGYC	2 cut(s)	347, 491
BstC8I	GCNNGC	2 cut(s)	218, 435
BstDEI	CTNAG	4 cut(s)	47, 450, 528, 673
BstF5I	GGATG	2 cut(s)	379, 470
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	142, 159, 318
BstMBI	GATC	3 cut(s)	139, 156, 315
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 434, 467
BstNI	CCWGG	1 cut(s)	597
BstSCI	CCNGG	2 cut(s)	311, 595
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	454, 579
BstX2I	RGATCY	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	5 cut(s)	18, 108, 190, 205, 216
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	379, 470
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	514, 636
Cac8I	GCNNGC	2 cut(s)	218, 435
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	2 cut(s)	8, 216
Cfr13I	GGNCC	4 cut(s)	152, 287, 309, 599
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	359, 523
CspAI	ACCGGT	1 cut(s)	8
CviQI	GTAC	2 cut(s)	359, 523
DdeI	CTNAG	4 cut(s)	47, 450, 528, 673
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	3 cut(s)	141, 158, 317
DpnII	GATC	3 cut(s)	139, 156, 315
EaeI	YGGCCR	2 cut(s)	106, 188
EciI	GGCGGA	1 cut(s)	395
Eco47I	GGWCC	4 cut(s)	152, 287, 309, 599
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	595
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
FaiI	YATR	6 cut(s)	137, 260, 371, 426, 519, 581
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
Fnu4HI	GCNGC	4 cut(s)	66, 345, 468, 593
FokI	GGATG	2 cut(s)	386, 457
Fsp4HI	GCNGC	4 cut(s)	66, 345, 468, 593
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	4 cut(s)	66, 345, 468, 593
GsaI	CCCAGC	1 cut(s)	616
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	5 cut(s)	18, 108, 190, 205, 216
HapII	CCGG	5 cut(s)	9, 109, 217, 313, 474
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	2 cut(s)	347, 491
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	4 cut(s)	162, 198, 409, 645
HpaII	CCGG	5 cut(s)	9, 109, 217, 313, 474
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	237, 397
Hpy188I	TCNGA	6 cut(s)	156, 161, 335, 451, 496, 531
Hpy188III	TCNNGA	4 cut(s)	244, 267, 307, 474
Hpy8I	GTNNAC	2 cut(s)	237, 397
Hpy99I	CGWCG	3 cut(s)	395, 490, 496
HpyAV	CCTTC	2 cut(s)	106, 647
HpyCH4III	ACNGT	3 cut(s)	241, 264, 401
HpyCH4IV	ACGT	2 cut(s)	28, 498
HpyCH4V	TGCA	4 cut(s)	397, 428, 470, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 434, 467
HpyF3I	CTNAG	4 cut(s)	47, 450, 528, 673
HpySE526I	ACGT	2 cut(s)	28, 498
Hsp92I	GRCGYC	2 cut(s)	347, 491
HspAI	GCGC	1 cut(s)	347
KasI	GGCGCC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	216
KroNI	GCCGGC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	139, 156, 315
Lsp1109I	GCAGC	2 cut(s)	454, 579
LweI	GCATC	2 cut(s)	479, 531
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	28, 498
MalI	GATC	3 cut(s)	141, 158, 317
MboI	GATC	3 cut(s)	139, 156, 315
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	3 cut(s)	149, 399, 435
MluCI	AATT	1 cut(s)	628
Mly113I	GGCGCC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	388, 474
MnlI	CCTC	8 cut(s)	29, 33, 123, 201, 206, 278, 300, 314
MroI	TCCGGA	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	216
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	5 cut(s)	9, 109, 217, 313, 474
MspR9I	CCNGG	2 cut(s)	313, 597
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	217, 434, 467
NaeI	GCCGGC	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	139, 156, 315
NgoMIV	GCCGGC	1 cut(s)	216
NlaIV	GGNNCC	3 cut(s)	311, 317, 348
NmeAIII	GCCGAG	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	438
PdiI	GCCGGC	1 cut(s)	218
PfeI	GAWTC	4 cut(s)	162, 198, 409, 645
PflFI	GACNNNGTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	370
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	67, 346, 469, 594
PluTI	GGCGCC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	3 cut(s)	311, 317, 348
PspPI	GGNCC	4 cut(s)	152, 287, 309, 599
PspPPI	RGGWCCY	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	315
PsyI	GACNNNGTC	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	2 cut(s)	360, 524
RsaNI	GTAC	2 cut(s)	359, 523
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	4 cut(s)	66, 345, 468, 593
Sau3AI	GATC	3 cut(s)	139, 156, 315
Sau96I	GGNCC	4 cut(s)	152, 287, 309, 599
ScrFI	CCNGG	2 cut(s)	313, 597
SduI	GDGCHC	3 cut(s)	149, 399, 435
SfaNI	GCATC	2 cut(s)	479, 531
SfoI	GGCGCC	1 cut(s)	348
SinI	GGWCC	4 cut(s)	152, 287, 309, 599
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	628
SsiI	CCGC	5 cut(s)	65, 324, 344, 380, 461
SspDI	GGCGCC	1 cut(s)	346
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	311, 595
TaaI	ACNGT	3 cut(s)	241, 264, 401
TaiI	ACGT	2 cut(s)	31, 501
TaqI	TCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	628
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	2 cut(s)	68, 347
TfiI	GAWTC	4 cut(s)	162, 198, 409, 645
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	2 cut(s)	514, 643
TseI	GCWGC	2 cut(s)	467, 592
TspDTI	ATGAA	1 cut(s)	680
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	2 cut(s)	514, 643
Tth111I	GACNNNGTC	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	395
VpaK11BI	GGWCC	4 cut(s)	152, 287, 309, 599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.