Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001671

Physical Location & Seq

Genomic Coordinates Forward (+)

65285598 .. 65286627

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGGGAGGATTATGTGATATGGTTAGAGAGAAATGGAGATGCAAACAAAGGAGGACCACTTGTTGAGTATGAGCGAAGAATTGCTGCAGGCGAACTTGTTGATGGTGATGCCGCCGGTAGGCACCCCATCGAGATGGATCCAGGTGCATCCGTGATGCTTGCAGAGTTGGCAATGGAGGCTAGCTTGCCAAGTGGGGTGTTAATTATTGTTCATGGCACCGATGAAACTTTTGATGCTATTTGTGATGATGATGACAGAGTGACCACCGAACTCGGTCATGGTAATTCCAGGCCACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

101

Amino Acids

10.81

Weight (kDa)

4.21

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28070 AT4G28070 AT4G30490
fragaria_vesca	FvH4_4g08720 FvH4_4g08720
malus_domestica	MD13G1275200.v1.1 MD16G1260700.v1.1
prunus_persica	Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1
pyrus_communis	pycom13g28650 pycom16g22820
rosa_chinensis	RchiOBHm_Chr2g0167931 RchiOBHm_Chr4g0405201 RchiOBHm_Chr6g0283891
rosa_laevigata	RLG00000008864
rosa_multiflora	Rmu_sc0000555.1_g000029 Rmu_sc0002500.1_g000005 Rmu_ssc0000255.1_g000022
rosa_roxburghii	Rroxscaffold_1G00033980 Rroxscaffold_2G00108990 Rroxscaffold_3G00223720 Rroxscaffold_5G00344940 Rroxscaffold_5G00349450 Rroxscaffold_6G00399190 Rroxscaffold_7G00214630
rosa_rugosa	Rorug04G0054800 Rorug04G0054900
rosa_samantha	Rh1AG171300 Rh2BG612400 Rh4AG129700 Rh4AG188200 Rh4BG123600 Rh4CG137000 Rh4DG123200 Rh4DG173800 Rh4DG239400 Rh7DG352600
rosa_wichuraiana	Rw4G002430 Rw4G010480 Rw4G026910 Rw7G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	123, 218
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	2 cut(s)	134, 147
AfiI	CCNNNNNNNGG	1 cut(s)	120
AjnI	CCWGG	2 cut(s)	142, 290
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
AlwI	GGATC	2 cut(s)	134, 147
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	123, 218
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	3 cut(s)	98, 130, 137
BciT130I	CCWGG	2 cut(s)	144, 292
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	2 cut(s)	87, 114
BlsI	GCNGC	2 cut(s)	88, 115
Bme1390I	CCNGG	2 cut(s)	144, 292
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	125, 141, 220
BmrFI	CCNGG	2 cut(s)	144, 292
BmsI	GCATC	5 cut(s)	31, 100, 147, 158, 226
BmtI	GCTAGC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	144, 292
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMI	GCAATG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	2 cut(s)	123, 218
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	295
BspLI	GGNNCC	3 cut(s)	125, 141, 220
BspMAI	CTGCAG	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	134, 147
BspT107I	GGYRCC	2 cut(s)	123, 218
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	144, 292
BstC8I	GCNNGC	4 cut(s)	91, 162, 184, 188
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 179
BstNI	CCWGG	2 cut(s)	144, 292
BstSCI	CCNGG	2 cut(s)	142, 290
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	4 cut(s)	91, 162, 184, 188
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	2 cut(s)	215, 281
CviJI	RGCY	3 cut(s)	182, 186, 295
CviKI_1	RGCY	3 cut(s)	182, 186, 295
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	142, 290
FaeI	CATG	2 cut(s)	218, 284
FaiI	YATR	5 cut(s)	15, 22, 72, 216, 282
FatI	CATG	2 cut(s)	214, 280
Fnu4HI	GCNGC	2 cut(s)	87, 114
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	87, 114
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	87, 114
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	2 cut(s)	218, 284
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	44, 89, 149, 164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 179
Hsp92II	CATG	2 cut(s)	218, 284
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	75, 129, 130, 156, 277
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	5 cut(s)	31, 100, 147, 158, 226
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	90
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	3 cut(s)	81, 204, 286
MnlI	CCTC	2 cut(s)	47, 172
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	144, 292
MvaI	CCWGG	2 cut(s)	144, 292
MwoI	GCNNNNNNNGC	2 cut(s)	170, 179
NdeII	GATC	1 cut(s)	139
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	218, 284
NlaIV	GGNNCC	3 cut(s)	125, 141, 220
NmuCI	GTSAC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	88, 115
Psp6I	CCWGG	2 cut(s)	142, 290
PspGI	CCWGG	2 cut(s)	142, 290
PspN4I	GGNNCC	3 cut(s)	125, 141, 220
PspPI	GGNCC	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	87, 114
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	144, 292
SetI	ASST	2 cut(s)	148, 188
SfaNI	GCATC	5 cut(s)	31, 100, 147, 158, 226
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	81, 204, 286
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	142, 290
TaqI	TCGA	1 cut(s)	132
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	81, 204, 286
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	203, 240
TspGWI	ACGGA	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	56
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.