Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001671

Physical Location & Seq

Genomic Coordinates Forward (+)

15103849 .. 15104927

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGTCGGCGTCGGCGTCGTCTTCAGCTCTCTCAAGACTGTCCAAGATCAGCGAGACACTTCAATCCCTCCCACGCAAACAAGGACGGTGTGAGAGAAATGGAGATGCAAACAAAGGAGGACCACTTGTTGAGTATGAGCGAAGAATTGCTGCAGCGAACTTGTGGATAGTGATGCTCGCTGTAGGCACCTTAAGAGAACTTCAAAGGCTATATGATGAACTTGTTCAGCCACCGATGCCCGCCGGCCGGATAGATATACGGCTTCGAGGAAATCGGAAGGAATTTGTCCGGCTTCTTAAGGAAAAGTTTCAAGAATTTATTGGAGATTACGAAGCTCATCCCGAGGAGGCAGAAGTAGTTATGGGAAGAACATTAAAGGTTCCACTAGATACATGGTCGGATAACGGACATGAAGACCAAGATGGAAAAGGTGCCCCGGGAAATATTCAGCTTTGTGGTAATGCTCGGCGGGGAAGGAAAGTTATCGGGCTGGATGACAGAGTGACCACCGAACTCGATCATGGTAATTCCAGTGCCACTTGTTTGATTGGGAGCAGTGGAGGATTTTTGGAGGGGTATGCTGCTGAAACAATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFG1_ATPase

Protein Analysis

200

Amino Acids

21.88

Weight (kDa)

6.34

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28070 AT4G28070 AT4G30490
fragaria_vesca	FvH4_4g08720 FvH4_4g08720
malus_domestica	MD13G1275200.v1.1 MD16G1260700.v1.1
prunus_persica	Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1 Prupe.1G100000_v2.0.a1
pyrus_communis	pycom13g28650 pycom16g22820
rosa_chinensis	RchiOBHm_Chr2g0167931 RchiOBHm_Chr4g0405201 RchiOBHm_Chr6g0283891
rosa_laevigata	RLG00000008864
rosa_multiflora	Rmu_sc0000555.1_g000029 Rmu_sc0002500.1_g000005 Rmu_ssc0000255.1_g000022
rosa_roxburghii	Rroxscaffold_1G00033980 Rroxscaffold_2G00108990 Rroxscaffold_3G00223720 Rroxscaffold_5G00344940 Rroxscaffold_5G00349450 Rroxscaffold_6G00399190 Rroxscaffold_7G00214630
rosa_rugosa	Rorug04G0054800 Rorug04G0054900
rosa_samantha	Rh1AG171300 Rh2BG612400 Rh4AG129700 Rh4AG188200 Rh4BG123600 Rh4CG137000 Rh4DG123200 Rh4DG173800 Rh4DG239400 Rh7DG352600
rosa_wichuraiana	Rw4G002430 Rw4G010480 Rw4G026910 Rw7G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 434
AciI	CCGC	2 cut(s)	243, 472
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	284, 317
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	3 cut(s)	5, 11, 17
AfiI	CCNNNNNNNGG	1 cut(s)	249
AflII	CTTAAG	2 cut(s)	193, 299
AgsI	TTSAA	3 cut(s)	65, 206, 314
AluBI	AGCT	3 cut(s)	29, 338, 454
AluI	AGCT	3 cut(s)	29, 338, 454
Alw26I	GTCTC	1 cut(s)	50
Ama87I	CYCGRG	2 cut(s)	344, 439
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	3 cut(s)	152, 155, 584
ApoI	RAATTY	2 cut(s)	284, 317
Asp700I	GAANNNNTTC	2 cut(s)	225, 309
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	2 cut(s)	440, 441
AvaI	CYCGRG	2 cut(s)	344, 439
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	2 cut(s)	188, 434
BbsI	GAAGAC	2 cut(s)	15, 423
BbvI	GCAGC	3 cut(s)	139, 167, 571
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	278
BcnI	CCSGG	2 cut(s)	440, 441
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	153, 183
BfrI	CTTAAG	2 cut(s)	193, 299
BisI	GCNGC	3 cut(s)	153, 156, 585
BlsI	GCNGC	3 cut(s)	154, 157, 586
Bme1390I	CCNGG	2 cut(s)	440, 441
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	2 cut(s)	344, 439
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	190, 384, 436
BmrFI	CCNGG	2 cut(s)	440, 441
BmsI	GCATC	3 cut(s)	97, 165, 228
BpiI	GAAGAC	2 cut(s)	15, 423
BpuEI	CTTGAG	1 cut(s)	19
BpuMI	CCSGG	2 cut(s)	440, 441
BsaHI	GRCGYC	3 cut(s)	5, 11, 17
BsaJI	CCNNGG	3 cut(s)	345, 438, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	345, 438, 439
BseGI	GGATG	2 cut(s)	340, 502
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	439
BseX3I	CGGCCG	1 cut(s)	247
BseXI	GCAGC	3 cut(s)	139, 167, 571
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	2 cut(s)	188, 434
BsiEI	CGRYCG	1 cut(s)	250
BsiHKCI	CYCGRG	2 cut(s)	344, 439
BsiSI	CCGG	4 cut(s)	246, 250, 292, 440
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	2 cut(s)	344, 439
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	48, 520
BspACI	CCGC	2 cut(s)	243, 472
BspANI	GGCC	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	190, 384, 436
BspMAI	CTGCAG	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	188, 434
BspTI	CTTAAG	2 cut(s)	193, 299
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	345, 438, 439
BssMI	GATC	2 cut(s)	48, 520
BssNI	GRCGYC	3 cut(s)	5, 11, 17
Bst4CI	ACNGT	2 cut(s)	42, 90
BstACI	GRCGYC	3 cut(s)	5, 11, 17
BstAFI	CTTAAG	2 cut(s)	193, 299
BstC8I	GCNNGC	3 cut(s)	180, 243, 247
BstF5I	GGATG	2 cut(s)	340, 502
BstKTI	GATC	2 cut(s)	51, 523
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	48, 520
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	438, 439
BstSFI	CTRYAG	2 cut(s)	153, 183
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	3 cut(s)	139, 167, 571
BstV2I	GAAGAC	2 cut(s)	15, 423
BstZI	CGGCCG	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	340, 502
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	541, 565
Cac8I	GCNNGC	3 cut(s)	180, 243, 247
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	122
Cfr9I	CCCGGG	1 cut(s)	439
CseI	GACGC	1 cut(s)	6
CviAII	CATG	3 cut(s)	396, 413, 524
CviJI	RGCY	9 cut(s)	29, 211, 232, 249, 265, 295, 338, 454, 493
CviKI_1	RGCY	9 cut(s)	29, 211, 232, 249, 265, 295, 338, 454, 493
DpnI	GATC	2 cut(s)	50, 522
DpnII	GATC	2 cut(s)	48, 520
EaeI	YGGCCR	1 cut(s)	247
EagI	CGGCCG	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	122
Eco52I	CGGCCG	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	9
Eco88I	CYCGRG	2 cut(s)	344, 439
FaeI	CATG	3 cut(s)	399, 416, 527
FaiI	YATR	9 cut(s)	138, 214, 216, 260, 365, 397, 414, 525, 582
FatI	CATG	3 cut(s)	395, 412, 523
FauI	CCCGC	2 cut(s)	250, 465
Fnu4HI	GCNGC	3 cut(s)	153, 156, 585
FokI	GGATG	2 cut(s)	327, 509
Fsp4HI	GCNGC	3 cut(s)	153, 156, 585
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	3 cut(s)	153, 156, 585
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	4 cut(s)	246, 250, 292, 440
HgaI	GACGC	1 cut(s)	6
Hin1I	GRCGYC	3 cut(s)	5, 11, 17
Hin1II	CATG	3 cut(s)	399, 416, 527
HpaII	CCGG	4 cut(s)	246, 250, 292, 440
Hpy188I	TCNGA	2 cut(s)	279, 403
Hpy188III	TCNNGA	3 cut(s)	36, 314, 344
Hpy99I	CGWCG	3 cut(s)	10, 16, 22
HpyAV	CCTTC	2 cut(s)	274, 471
HpyCH4III	ACNGT	2 cut(s)	42, 90
HpyCH4V	TGCA	2 cut(s)	110, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
Hsp92I	GRCGYC	3 cut(s)	5, 11, 17
Hsp92II	CATG	3 cut(s)	399, 416, 527
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	48, 520
LmnI	GCTCC	1 cut(s)	555
LpnPI	CCDG	6 cut(s)	259, 263, 305, 453, 479, 547
Lsp1109I	GCAGC	3 cut(s)	139, 167, 571
LweI	GCATC	3 cut(s)	97, 165, 228
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	50, 522
MboI	GATC	2 cut(s)	48, 520
MboII	GAAGA	4 cut(s)	15, 156, 381, 428
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	5 cut(s)	147, 284, 317, 529, 594
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	7 cut(s)	80, 113, 263, 340, 343, 557, 568
MroNI	GCCGGC	1 cut(s)	245
MroXI	GAANNNNTTC	2 cut(s)	225, 309
MseI	TTAA	3 cut(s)	194, 300, 377
MspCI	CTTAAG	2 cut(s)	193, 299
MspI	CCGG	4 cut(s)	246, 250, 292, 440
MspR9I	CCNGG	2 cut(s)	440, 441
MunI	CAATTG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	238
NaeI	GCCGGC	1 cut(s)	247
NciI	CCSGG	2 cut(s)	440, 441
NdeII	GATC	2 cut(s)	48, 520
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	399, 416, 527
NlaIV	GGNNCC	3 cut(s)	190, 384, 436
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdiI	GCCGGC	1 cut(s)	247
PdmI	GAANNNNTTC	2 cut(s)	225, 309
PkrI	GCNGC	3 cut(s)	154, 157, 586
PspN4I	GGNNCC	3 cut(s)	190, 384, 436
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	194, 300, 377
SatI	GCNGC	3 cut(s)	153, 156, 585
Sau3AI	GATC	2 cut(s)	48, 520
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	440, 441
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	6 cut(s)	31, 194, 340, 384, 436, 456
SfaNI	GCATC	3 cut(s)	97, 165, 228
SfcI	CTRYAG	2 cut(s)	153, 183
SinI	GGWCC	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	441
SmlI	CTYRAG	3 cut(s)	34, 193, 299
SmoI	CTYRAG	3 cut(s)	34, 193, 299
Sse9I	AATT	5 cut(s)	147, 284, 317, 529, 594
SsiI	CCGC	2 cut(s)	243, 472
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	438, 439
TaaI	ACNGT	2 cut(s)	42, 90
TaqI	TCGA	2 cut(s)	268, 519
TasI	AATT	5 cut(s)	147, 284, 317, 529, 594
Tru1I	TTAA	3 cut(s)	194, 300, 377
Tru9I	TTAA	3 cut(s)	194, 300, 377
TscAI	CASTG	2 cut(s)	541, 565
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	3 cut(s)	152, 155, 584
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	234, 429
TspGWI	ACGGA	1 cut(s)	423
TspMI	CCCGGG	1 cut(s)	439
TspRI	CASTG	2 cut(s)	541, 565
Vha464I	CTTAAG	2 cut(s)	193, 299
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	284, 317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XmaI	CCCGGG	1 cut(s)	439
XmnI	GAANNNNTTC	2 cut(s)	225, 309
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.