RLG00000007461

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003966
Physical Location & Seq
Reverse (-)
17064930 .. 17066096
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007461

Sequence Viewer

Length: 771 bp
ATGGAATATTCCAAGAAACCGGTTGTTTTAGTTGGGCCGTTTAGATCATCGAAGGAGCGAGGAAAACCCTTTGATGATGGAATACACTCAGCAGTGAAAGGTTTGGTGATATTTCATGTTCCAGGGTTCACAATTGCGTCCGTCCAGTTTGAATATGACGACGGCGGATGCTCAACTTGGTCAGACAACCATGGGCTCATCACAGACACCAAAGACGTCCGCTTCAAAGGAGCAAGCATTAAGTTCAATTATCCAGACGAATTTTTGACTTCAGTTCTTGGGTGTTGTCAAGAAGACGAGACCGGGTCCTTTGTCACCACGCTTGCTTTTAAGACCAACAAAAAAGATTATGGACCCTTTGGGTCGACTCAATGCAACCCGAAAGACTGTTTTACAATTGATCACGTGCCTGGAAGTAAGATAGTTGGTTTCCATGGCAGATCAAACAACAACAGCTTCGCTGGTGGTATTGCTTCAATTGGAGCATACCTACTAAAGCCTCATGATCAACAAATTGAATGTCCTCCGTCAACACGGAGACAAGCTGGATATCCTTCCCAACCCAAGTTCAAGAACAGAACCCAATACCAGGATCATTATGCAATTAAAGATAATGTAATTAGCGAAAACAAGGGAAAGGGCAACGGAACTTTCCATTTTGATGACACATCTCAAAACCCGAAGGAATGCTCAATTTCAAATCATCAAGTTACGGGAAACGAGGGAGACTGCAACGGAGCTATCTATTTCGGCCGCGGCCCGCGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

257

Amino Acids

28.12

Weight (kDa)

7.6

Isoelectric Point (pI)

25.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 19 - 163 1.3e-24 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 365
AccII CGCG 2 cut(s) 756, 763
AciI CCGC 6 cut(s) 165, 220, 754, 756, 761, 763
AclWI GGATC 1 cut(s) 600
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 255
AcvI CACGTG 1 cut(s) 406
AcyI GRCGYC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 589
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 7 cut(s) 152, 226, 247, 477, 518, 571, 699
AjnI CCWGG 3 cut(s) 121, 409, 588
AluBI AGCT 3 cut(s) 456, 545, 740
AluI AGCT 3 cut(s) 456, 545, 740
Alw26I GTCTC 3 cut(s) 293, 532, 720
AlwI GGATC 1 cut(s) 600
AoxI GGCC 3 cut(s) 35, 751, 757
ApoI RAATTY 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AsiGI ACCGGT 1 cut(s) 19
AspS9I GGNCC 4 cut(s) 35, 306, 353, 758
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 118, 307
AvaII GGWCC 2 cut(s) 306, 353
BanII GRGCYC 1 cut(s) 198
BbrPI CACGTG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 300
BccI CCATC 1 cut(s) 71
BceAI ACGGC 2 cut(s) 22, 178
BciT130I CCWGG 3 cut(s) 123, 411, 590
BclI TGATCA 2 cut(s) 400, 505
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 293, 532, 720
BisI GCNGC 2 cut(s) 754, 757
BlsI GCNGC 2 cut(s) 755, 758
Bme1390I CCNGG 4 cut(s) 123, 304, 411, 590
Bme18I GGWCC 2 cut(s) 306, 353
BmgT120I GGNCC 4 cut(s) 35, 306, 353, 758
BmiI GGNNCC 2 cut(s) 307, 355
BmrFI CCNGG 4 cut(s) 123, 304, 411, 590
BmsI GCATC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 5 cut(s) 122, 190, 433, 754, 761
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 589
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 3 cut(s) 123, 411, 590
BseDI CCNNGG 5 cut(s) 122, 190, 433, 754, 761
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 589
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 145
BseX3I CGGCCG 1 cut(s) 751
Bsh1236I CGCG 2 cut(s) 756, 763
Bsh1285I CGRYCG 1 cut(s) 754
BshFI GGCC 3 cut(s) 37, 753, 759
BshTI ACCGGT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 754
BsiSI CCGG 2 cut(s) 20, 303
BslI CCNNNNNNNGG 1 cut(s) 589
BsmAI GTCTC 3 cut(s) 293, 532, 720
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 3 cut(s) 37, 753, 759
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 5 cut(s) 44, 400, 440, 505, 592
Bsp19I CCATGG 2 cut(s) 190, 433
BspACI CCGC 6 cut(s) 165, 220, 754, 756, 761, 763
BspANI GGCC 3 cut(s) 37, 753, 759
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 2 cut(s) 756, 763
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 307, 355
BspPI GGATC 1 cut(s) 600
BspTNI GGTCTC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 5 cut(s) 122, 190, 433, 754, 761
BssMI GATC 5 cut(s) 44, 400, 440, 505, 592
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 190, 433
Bst2UI CCWGG 3 cut(s) 123, 411, 590
Bst4CI ACNGT 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 4 cut(s) 235, 324, 761, 765
BstDEI CTNAG 1 cut(s) 88
BstDSI CCRYGG 4 cut(s) 190, 433, 754, 761
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 2 cut(s) 756, 763
BstKTI GATC 5 cut(s) 47, 403, 443, 508, 595
BstMAI GTCTC 3 cut(s) 293, 532, 720
BstMBI GATC 5 cut(s) 44, 400, 440, 505, 592
BstMCI CGRYCG 1 cut(s) 754
BstNI CCWGG 3 cut(s) 123, 411, 590
BstSCI CCNGG 4 cut(s) 121, 302, 409, 588
BstUI CGCG 2 cut(s) 756, 763
BstV2I GAAGAC 1 cut(s) 300
BstZI CGGCCG 1 cut(s) 751
BsuRI GGCC 3 cut(s) 37, 753, 759
BtgI CCRYGG 4 cut(s) 190, 433, 754, 761
BtsCI GGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 235, 324, 761, 765
CciI TCATGA 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 4 cut(s) 35, 306, 353, 758
Cfr42I CCGCGG 2 cut(s) 757, 764
CseI GACGC 1 cut(s) 126
CspAI ACCGGT 1 cut(s) 19
CviAII CATG 4 cut(s) 116, 191, 434, 503
CviJI RGCY 8 cut(s) 37, 196, 456, 499, 545, 740, 753, 759
CviKI_1 RGCY 8 cut(s) 37, 196, 456, 499, 545, 740, 753, 759
DdeI CTNAG 1 cut(s) 88
DpnI GATC 5 cut(s) 46, 402, 442, 507, 594
DpnII GATC 5 cut(s) 44, 400, 440, 505, 592
EaeI YGGCCR 1 cut(s) 751
EagI CGGCCG 1 cut(s) 751
EciI GGCGGA 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 751
Eco130I CCWWGG 2 cut(s) 190, 433
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 306, 353
Eco52I CGGCCG 1 cut(s) 751
Eco57I CTGAAG 1 cut(s) 255
Eco72I CACGTG 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 306
EcoRII CCWGG 3 cut(s) 121, 409, 588
EcoRV GATATC 1 cut(s) 551
EcoT14I CCWWGG 2 cut(s) 190, 433
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 190, 433
FaeI CATG 4 cut(s) 119, 194, 437, 506
FaiI YATR 9 cut(s) 117, 156, 192, 351, 435, 487, 504, 600, 769
FatI CATG 4 cut(s) 115, 190, 433, 502
FauI CCCGC 2 cut(s) 756, 768
FbaI TGATCA 2 cut(s) 400, 505
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 2 cut(s) 754, 757
FokI GGATG 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 754, 757
GluI GCNGC 2 cut(s) 754, 757
HaeIII GGCC 3 cut(s) 37, 753, 759
HapII CCGG 2 cut(s) 20, 303
HgaI GACGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 4 cut(s) 119, 194, 437, 506
HincII GTYRAC 2 cut(s) 366, 531
HindII GTYRAC 2 cut(s) 366, 531
HinfI GANTC 1 cut(s) 367
HpaII CCGG 2 cut(s) 20, 303
HphI GGTGA 2 cut(s) 118, 307
Hpy166II GTNNAC 3 cut(s) 129, 366, 531
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 4 cut(s) 254, 290, 503, 571
Hpy8I GTNNAC 3 cut(s) 129, 366, 531
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 46, 564, 676
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 2 cut(s) 216, 405
HpyCH4V TGCA 3 cut(s) 375, 602, 732
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 2 cut(s) 216, 405
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 4 cut(s) 119, 194, 437, 506
Ksp22I TGATCA 2 cut(s) 400, 505
KspI CCGCGG 2 cut(s) 757, 764
Kzo9I GATC 5 cut(s) 44, 400, 440, 505, 592
LmnI GCTCC 4 cut(s) 55, 230, 482, 737
LweI GCATC 1 cut(s) 158
MaeII ACGT 2 cut(s) 216, 405
MaeIII GTNAC 2 cut(s) 313, 709
MalI GATC 5 cut(s) 46, 402, 442, 507, 594
MboI GATC 5 cut(s) 44, 400, 440, 505, 592
MboII GAAGA 1 cut(s) 305
MfeI CAATTG 3 cut(s) 132, 396, 477
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 9 cut(s) 132, 247, 260, 396, 477, 513, 603, 618, 693
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 4 cut(s) 53, 510, 534, 715
MseI TTAA 3 cut(s) 240, 330, 606
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 2 cut(s) 756, 763
MspI CCGG 2 cut(s) 20, 303
MspR9I CCNGG 4 cut(s) 123, 304, 411, 590
MunI CAATTG 3 cut(s) 132, 396, 477
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 3 cut(s) 123, 411, 590
MvnI CGCG 2 cut(s) 756, 763
NciI CCSGG 1 cut(s) 304
NcoI CCATGG 2 cut(s) 190, 433
NdeII GATC 5 cut(s) 44, 400, 440, 505, 592
NlaIII CATG 4 cut(s) 119, 194, 437, 506
NlaIV GGNNCC 2 cut(s) 307, 355
NmuCI GTSAC 1 cut(s) 313
PagI TCATGA 1 cut(s) 502
PctI GAATGC 1 cut(s) 692
PflFI GACNNNGTC 1 cut(s) 304
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 2 cut(s) 755, 758
PleI GAGTC 1 cut(s) 361
PmaCI CACGTG 1 cut(s) 406
PmlI CACGTG 1 cut(s) 406
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 121, 409, 588
PspCI CACGTG 1 cut(s) 406
PspGI CCWGG 3 cut(s) 121, 409, 588
PspN4I GGNNCC 2 cut(s) 307, 355
PspPI GGNCC 4 cut(s) 35, 306, 353, 758
PspPPI RGGWCCY 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 660
SacII CCGCGG 2 cut(s) 757, 764
SalI GTCGAC 1 cut(s) 364
SaqAI TTAA 3 cut(s) 240, 330, 606
SatI GCNGC 2 cut(s) 754, 757
Sau3AI GATC 5 cut(s) 44, 400, 440, 505, 592
Sau96I GGNCC 4 cut(s) 35, 306, 353, 758
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 4 cut(s) 123, 304, 411, 590
SduI GDGCHC 1 cut(s) 198
SetI ASST 7 cut(s) 103, 219, 408, 458, 492, 547, 742
SfaNI GCATC 1 cut(s) 158
Sfr303I CCGCGG 2 cut(s) 757, 764
SgrBI CCGCGG 2 cut(s) 757, 764
SinI GGWCC 2 cut(s) 306, 353
SmiMI CAYNNNNRTG 1 cut(s) 660
Sse9I AATT 9 cut(s) 132, 247, 260, 396, 477, 513, 603, 618, 693
SsiI CCGC 6 cut(s) 165, 220, 754, 756, 761, 763
SspI AATATT 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 121, 302, 409, 588
StyI CCWWGG 2 cut(s) 190, 433
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 2 cut(s) 219, 408
TaqI TCGA 2 cut(s) 50, 365
TasI AATT 9 cut(s) 132, 247, 260, 396, 477, 513, 603, 618, 693
TauI GCSGC 2 cut(s) 756, 759
Tru1I TTAA 3 cut(s) 240, 330, 606
Tru9I TTAA 3 cut(s) 240, 330, 606
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 5 cut(s) 130, 516, 550, 660, 750
TspRI CASTG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 306, 353
XapI RAATTY 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 365
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.