Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009180.1

Orthogroup ID

OG0003966

Physical Location & Seq

Genomic Coordinates Reverse (-)

19358 .. 20483

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009180.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgagtcttgaggaatccaagaaaaccgttgtttcagtcgggccgtttggagaaaataagcgagtaataccctttaatgatggagtacactcagcagtgaaaggtttggagatggtctatttgaaaggtgaaaggggacatattctcaacgtccggtttgaatatgaagacgacggaatctcagtttggggagacaggcatggtacaagtatcattttggatgtcgtaatgacagggctgctcggaaccgacatcagaagagaatgcattagtttcaattatccagacgaatttttgacttcagttgatggaaattatgaagcaaacttgtcggggtcctggctatcctcacttacttttaacactaacagaaaaacttacggaccctttggatcgtcatcgactccaaatcgcaatcggagaagctatttctcaattcatgtgcctggaagtaagattgttggttttcatggcagatcacacaggtggtggagtggcagttttgacataggagcatacctaaagcctattgatcaacaaagtgaatatgcatcttcaacagcactgatgctttatccatcagagcctccatatcgacatggatatccttctcaaaccaagctcaataaagatgacagacctcaaaaccagaaacattacgcagtttcaaatattcgagttagcagaaatgagggagaccacaacggagctttctatttgggagacaggtataaatatacgaactattatatcgaaaaggcagacatagcgcacaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

259

Amino Acids

29.41

Weight (kDa)

8.45

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003966)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172631
rosa_laevigata	RLG00000007461 RLG00000007464 RLG00000016814 RLG00000022123 RLG00000022127 RLG00000022128
rosa_multiflora	Rmu_sc0002053.1_g000003 Rmu_sc0003942.1_g000005 Rmu_sc0009180.1_g000003 Rmu_sc0019790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079610 Rroxscaffold_2G00079650 Rroxscaffold_2G00079660 Rroxscaffold_2G00079670 Rroxscaffold_2G00120600 Rroxscaffold_5G00366530
rosa_rugosa	Rorug01G0477900 Rorug02G0246000 Rorug02G0560700 Rorug02G0560800
rosa_samantha	Rh2AG031900 Rh2AG637700 Rh2BG030900 Rh2BG651200 Rh2CG617300 Rh2DG031400 Rh2DG664800 Rh2DG664900 Rh4AG255100 Rh4BG260700 Rh4DG255200
rosa_wichuraiana	Rw2G052690 Rw4G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	87, 205
AgsI	TTSAA	5 cut(s)	124, 161, 277, 558, 669
AjnI	CCWGG	2 cut(s)	338, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AleI	CACNNNNGTG	1 cut(s)	484
AluBI	AGCT	3 cut(s)	426, 622, 710
AluI	AGCT	3 cut(s)	426, 622, 710
Alw26I	GTCTC	3 cut(s)	186, 690, 717
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	3 cut(s)	41, 336, 383
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	336, 383
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	4 cut(s)	74, 106, 302, 586
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BciT130I	CCWGG	2 cut(s)	340, 447
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	3 cut(s)	186, 690, 717
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	340, 447
Bme18I	GGWCC	2 cut(s)	336, 383
BmgT120I	GGNCC	3 cut(s)	41, 336, 383
BmiI	GGNNCC	3 cut(s)	247, 337, 385
BmrFI	CCNGG	2 cut(s)	340, 447
BmsI	GCATC	2 cut(s)	558, 560
BpiI	GAAGAC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	690
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bse8I	GATNNNNATC	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	340, 447
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	105, 195
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	3 cut(s)	186, 690, 717
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	690
Bsp143I	GATC	3 cut(s)	392, 476, 532
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	104, 194
BspLI	GGNNCC	3 cut(s)	247, 337, 385
BspPI	GGATC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	690
BssMI	GATC	3 cut(s)	392, 476, 532
Bst2UI	CCWGG	2 cut(s)	340, 447
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	91, 181
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	3 cut(s)	395, 479, 535
BstMAI	GTCTC	3 cut(s)	186, 690, 717
BstMBI	GATC	3 cut(s)	392, 476, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNI	CCWGG	2 cut(s)	340, 447
BstSCI	CCNGG	2 cut(s)	338, 445
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 563
CfoI	GCGC	1 cut(s)	772
Cfr13I	GGNCC	3 cut(s)	41, 336, 383
Csp6I	GTAC	2 cut(s)	86, 204
CviAII	CATG	4 cut(s)	200, 440, 470, 599
CviJI	RGCY	8 cut(s)	43, 238, 343, 426, 526, 586, 622, 710
CviKI_1	RGCY	8 cut(s)	43, 238, 343, 426, 526, 586, 622, 710
CviQI	GTAC	2 cut(s)	86, 204
DdeI	CTNAG	2 cut(s)	91, 181
DpnI	GATC	3 cut(s)	394, 478, 534
DpnII	GATC	3 cut(s)	392, 476, 532
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	690
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	336, 383
Eco57I	CTGAAG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	338, 445
EcoRV	GATATC	1 cut(s)	605
EcoT22I	ATGCAT	2 cut(s)	269, 553
FaeI	CATG	4 cut(s)	203, 443, 473, 602
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	4 cut(s)	199, 439, 469, 598
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	239
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	1 cut(s)	772
Hin1II	CATG	4 cut(s)	203, 443, 473, 602
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HinfI	GANTC	4 cut(s)	4, 14, 177, 403
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	245, 257, 420, 583
Hpy188III	TCNNGA	2 cut(s)	8, 284
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	267, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	2 cut(s)	91, 181
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	203, 443, 473, 602
HspAI	GCGC	1 cut(s)	770
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	392, 476, 532
LmnI	GCTCC	2 cut(s)	512, 707
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	2 cut(s)	558, 560
MaeII	ACGT	1 cut(s)	150
MalI	GATC	3 cut(s)	394, 478, 534
MboI	GATC	3 cut(s)	392, 476, 532
MboII	GAAGA	3 cut(s)	179, 270, 546
MluCI	AATT	4 cut(s)	277, 290, 313, 435
MlyI	GAGTC	2 cut(s)	13, 397
MnlI	CCTC	5 cut(s)	4, 358, 597, 651, 685
Mph1103I	ATGCAT	2 cut(s)	269, 553
MseI	TTAA	2 cut(s)	75, 360
MslI	CAYNNNNRTG	1 cut(s)	484
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	340, 447
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	2 cut(s)	340, 447
MwoI	GCNNNNNNNGC	1 cut(s)	767
NdeII	GATC	3 cut(s)	392, 476, 532
NlaIII	CATG	4 cut(s)	203, 443, 473, 602
NlaIV	GGNNCC	3 cut(s)	247, 337, 385
NsiI	ATGCAT	2 cut(s)	269, 553
OliI	CACNNNNGTG	1 cut(s)	484
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	14, 177
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	2 cut(s)	12, 397
PpsI	GAGTC	2 cut(s)	12, 397
PpuMI	RGGWCCY	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	338, 445
PspGI	CCWGG	2 cut(s)	338, 445
PspN4I	GGNNCC	3 cut(s)	247, 337, 385
PspPI	GGNCC	3 cut(s)	41, 336, 383
PspPPI	RGGWCCY	1 cut(s)	336
RsaI	GTAC	2 cut(s)	87, 205
RsaNI	GTAC	2 cut(s)	86, 204
RseI	CAYNNNNRTG	1 cut(s)	484
SaqAI	TTAA	2 cut(s)	75, 360
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	392, 476, 532
Sau96I	GGNCC	3 cut(s)	41, 336, 383
SchI	GAGTC	2 cut(s)	13, 397
ScrFI	CCNGG	2 cut(s)	340, 447
SfaNI	GCATC	2 cut(s)	558, 560
SinI	GGWCC	2 cut(s)	336, 383
SmiMI	CAYNNNNRTG	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	4 cut(s)	277, 290, 313, 435
SspI	AATATT	1 cut(s)	673
StyD4I	CCNGG	2 cut(s)	338, 445
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	401, 595, 676, 753
TasI	AATT	4 cut(s)	277, 290, 313, 435
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	14, 177
Tru1I	TTAA	2 cut(s)	75, 360
Tru9I	TTAA	2 cut(s)	75, 360
TscAI	CASTG	2 cut(s)	102, 570
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	180, 333, 428, 458
TspGWI	ACGGA	3 cut(s)	189, 396, 720
TspRI	CASTG	2 cut(s)	102, 570
VpaK11BI	GGWCC	2 cut(s)	336, 383
XapI	RAATTY	1 cut(s)	290
Zsp2I	ATGCAT	2 cut(s)	269, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.