Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019790.1

Orthogroup ID

OG0003966

Physical Location & Seq

Genomic Coordinates Reverse (-)

11782 .. 13000

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019790.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgaatcctgaggaatccaagaaaaccgccgtttcagtcggaccgtttggatcaccgacgtcgggaggaagagtctttaatgatggaatacactcagcagtgaaaggtttggcgatagaatacttggaagggcacacaattgttaacgtccggtttgaatatgacgacgacggaatctcagtttggtcagacaagcatggtgaagtaaagatccctttggatctcttgtcagggctctccgaagtgctctccgacaacaacaaagtgatcagaagagaaacagtaaacaaagtcagaagggaaacaattagattcaattatccggacgaatatttaactgcagttcatggacggtattgtgacaacttgttgggcgccgtatgcgtcgtcaactcacttacttttaagaccaatagaaatacttacggaccctttggttggacgtctcaaaatgaaaaactgatcaacttattcccttgtttctcaattcatatgcctggaagtgagattgttggctttcatggcagatcaagcaggagtaagtggttgggtggtatttattcaataggagcctatgtaaagccttatcatcaacaaattgaataccctccgtcaaaagctctgatgctttatccatcagaacctccaagtctacctgaatttcattctcaaaccaagctcaataaagatgacagacctcaaaaccataaacattatacagtttcaaatattcaagttagcagaaatgagggagatcacaacggagctttccatttgggcgacatatatgcaaactgttatatagccaaacaagagtcgtcctcaatcggttacgccttgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

281

Amino Acids

31.53

Weight (kDa)

7.2

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003966)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172631
rosa_laevigata	RLG00000007461 RLG00000007464 RLG00000016814 RLG00000022123 RLG00000022127 RLG00000022128
rosa_multiflora	Rmu_sc0002053.1_g000003 Rmu_sc0003942.1_g000005 Rmu_sc0009180.1_g000003 Rmu_sc0019790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079610 Rroxscaffold_2G00079650 Rroxscaffold_2G00079660 Rroxscaffold_2G00079670 Rroxscaffold_2G00120600 Rroxscaffold_5G00366530
rosa_rugosa	Rorug01G0477900 Rorug02G0246000 Rorug02G0560700 Rorug02G0560800
rosa_samantha	Rh2AG031900 Rh2AG637700 Rh2BG030900 Rh2BG651200 Rh2CG617300 Rh2DG031400 Rh2DG664800 Rh2DG664900 Rh4AG255100 Rh4BG260700 Rh4DG255200
rosa_wichuraiana	Rw2G052690 Rw4G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	62, 446
AccB1I	GGYRCC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	652
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	3 cut(s)	58, 205, 228
AcsI	RAATTY	1 cut(s)	659
AcyI	GRCGYC	3 cut(s)	59, 375, 443
AfiI	CCNNNNNNNGG	2 cut(s)	62, 438
AgsI	TTSAA	6 cut(s)	158, 316, 564, 602, 726, 734
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	3 cut(s)	620, 679, 767
AluI	AGCT	3 cut(s)	620, 679, 767
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	3 cut(s)	58, 205, 228
Aor13HI	TCCGGA	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	41, 428
AsuHPI	GGTGA	2 cut(s)	45, 212
AvaII	GGWCC	2 cut(s)	41, 428
AxyI	CCTNAGG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	249
BccI	CCATC	2 cut(s)	77, 643
BceAI	ACGGC	2 cut(s)	14, 362
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	2 cut(s)	267, 462
BcoDI	GTCTC	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	2 cut(s)	41, 428
BmgT120I	GGNCC	2 cut(s)	41, 428
BmiI	GGNNCC	3 cut(s)	376, 430, 571
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BsaHI	GRCGYC	3 cut(s)	59, 375, 443
BsaWI	WCCGGW	2 cut(s)	150, 322
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 561, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 438
Bse21I	CCTNAGG	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	62, 438
BseMII	CTCAG	2 cut(s)	108, 192
BseSI	GKGCMC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	151, 323
BslI	CCNNNNNNNGG	2 cut(s)	62, 438
BsmAI	GTCTC	1 cut(s)	450
BsmBI	CGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	3 cut(s)	135, 237, 249
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
BspACI	CCGC	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	107, 191
BspEI	TCCGGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	376, 430, 571
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	3 cut(s)	58, 205, 228
BspT107I	GGYRCC	1 cut(s)	374
BssMI	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
BssNI	GRCGYC	3 cut(s)	59, 375, 443
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	5 cut(s)	45, 283, 354, 721, 797
Bst6I	CTCTTC	2 cut(s)	64, 268
BstACI	GRCGYC	3 cut(s)	59, 375, 443
BstDEI	CTNAG	3 cut(s)	9, 94, 178
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	7 cut(s)	53, 213, 223, 270, 465, 530, 757
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 522, 531
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	135
BstX2I	RGATCY	2 cut(s)	210, 220
BstYI	RGATCY	2 cut(s)	210, 220
Bsu36I	CCTNAGG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	41, 428
CpoI	CGGWCCG	1 cut(s)	41
CseI	GACGC	1 cut(s)	373
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	3 cut(s)	197, 347, 521
CviJI	RGCY	8 cut(s)	235, 516, 572, 583, 620, 679, 767, 806
CviKI_1	RGCY	8 cut(s)	235, 516, 572, 583, 620, 679, 767, 806
DdeI	CTNAG	3 cut(s)	9, 94, 178
DinI	GGCGCC	1 cut(s)	376
DpnI	GATC	7 cut(s)	52, 212, 222, 269, 464, 529, 756
DpnII	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
Eam1104I	CTCTTC	2 cut(s)	64, 268
EarI	CTCTTC	2 cut(s)	64, 268
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	41, 428
Eco81I	CCTNAGG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	3 cut(s)	200, 350, 524
FatI	CATG	3 cut(s)	196, 346, 520
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	2 cut(s)	267, 462
FblI	GTMKAC	1 cut(s)	652
FriOI	GRGCYC	1 cut(s)	237
GlaI	GCGC	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	378
HapII	CCGG	2 cut(s)	151, 323
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	3 cut(s)	59, 375, 443
Hin1II	CATG	3 cut(s)	200, 350, 524
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	2 cut(s)	145, 391
HindII	GTYRAC	2 cut(s)	145, 391
HinfI	GANTC	6 cut(s)	4, 14, 72, 174, 312, 815
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	151, 323
HphI	GGTGA	2 cut(s)	45, 212
Hpy166II	GTNNAC	4 cut(s)	145, 286, 391, 653
Hpy188I	TCNGA	8 cut(s)	41, 190, 241, 253, 272, 296, 624, 640
Hpy188III	TCNNGA	3 cut(s)	8, 63, 323
Hpy8I	GTNNAC	4 cut(s)	145, 286, 391, 653
Hpy99I	CGWCG	5 cut(s)	61, 64, 170, 173, 389
HpyAV	CCTTC	2 cut(s)	122, 291
HpyCH4III	ACNGT	5 cut(s)	45, 283, 354, 721, 797
HpyCH4IV	ACGT	3 cut(s)	59, 147, 443
HpyCH4V	TGCA	2 cut(s)	341, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 522, 531
HpyF3I	CTNAG	3 cut(s)	9, 94, 178
HpySE526I	ACGT	3 cut(s)	59, 147, 443
Hsp92I	GRCGYC	3 cut(s)	59, 375, 443
Hsp92II	CATG	3 cut(s)	200, 350, 524
HspAI	GCGC	1 cut(s)	375
KasI	GGCGCC	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	322
Ksp22I	TGATCA	2 cut(s)	267, 462
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
LmnI	GCTCC	2 cut(s)	569, 764
LpnPI	CCDG	8 cut(s)	21, 164, 216, 336, 483, 510, 520, 669
LweI	GCATC	1 cut(s)	615
MaeII	ACGT	3 cut(s)	59, 147, 443
MaeIII	GTNAC	2 cut(s)	359, 830
MalI	GATC	7 cut(s)	52, 212, 222, 269, 464, 529, 756
MboI	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
MboII	GAAGA	2 cut(s)	81, 285
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	2 cut(s)	210, 220
MhlI	GDGCHC	3 cut(s)	135, 237, 249
MluCI	AATT	6 cut(s)	138, 306, 316, 486, 597, 659
Mly113I	GGCGCC	1 cut(s)	375
MlyI	GAGTC	2 cut(s)	81, 824
MmeI	TCCRAC	3 cut(s)	19, 276, 419
MnlI	CCTC	7 cut(s)	4, 59, 618, 654, 708, 742, 832
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	4 cut(s)	78, 144, 335, 405
MspI	CCGG	2 cut(s)	151, 323
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	381, 522, 531
NarI	GGCGCC	1 cut(s)	375
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
NlaIII	CATG	3 cut(s)	200, 350, 524
NlaIV	GGNNCC	3 cut(s)	376, 430, 571
NmuCI	GTSAC	1 cut(s)	359
PfeI	GAWTC	4 cut(s)	4, 14, 174, 312
PleI	GAGTC	2 cut(s)	80, 823
PluTI	GGCGCC	1 cut(s)	378
PpsI	GAGTC	2 cut(s)	80, 823
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	376, 430, 571
PspPI	GGNCC	2 cut(s)	41, 428
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	210, 220
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	78, 144, 335, 405
Sau3AI	GATC	7 cut(s)	50, 210, 220, 267, 462, 527, 754
Sau96I	GGNCC	2 cut(s)	41, 428
SchI	GAGTC	2 cut(s)	81, 824
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	3 cut(s)	135, 237, 249
SfaNI	GCATC	1 cut(s)	615
SfcI	CTRYAG	1 cut(s)	339
SfoI	GGCGCC	1 cut(s)	376
SinI	GGWCC	2 cut(s)	41, 428
SmlI	CTYRAG	1 cut(s)	838
SmoI	CTYRAG	1 cut(s)	838
Sse9I	AATT	6 cut(s)	138, 306, 316, 486, 597, 659
SsiI	CCGC	1 cut(s)	27
SspDI	GGCGCC	1 cut(s)	374
SspI	AATATT	2 cut(s)	332, 730
StyD4I	CCNGG	1 cut(s)	496
TaaI	ACNGT	5 cut(s)	45, 283, 354, 721, 797
TaiI	ACGT	3 cut(s)	62, 150, 446
TasI	AATT	6 cut(s)	138, 306, 316, 486, 597, 659
TfiI	GAWTC	4 cut(s)	4, 14, 174, 312
Tru1I	TTAA	4 cut(s)	78, 144, 335, 405
Tru9I	TTAA	4 cut(s)	78, 144, 335, 405
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	6 cut(s)	17, 335, 468, 479, 509, 653
TspGWI	ACGGA	4 cut(s)	186, 441, 600, 777
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	41, 428
XapI	RAATTY	1 cut(s)	659
XmiI	GTMKAC	1 cut(s)	652
ZraI	GACGTC	2 cut(s)	60, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.