Rh2DG664900

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003966
Physical Location & Seq
Reverse (-)
89018085 .. 89018417
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG664900.1

Sequence Viewer

Length: 333 bp
ATGTTAACTCTGCGACAGAATCCTGAGGAATCCAAGAAAACCGTCGTTTCAGTCGGACCGTTTGGATCACCGACGTCGGGAGGAAGACCCTTTAATGATGGAATACACTCGGCAGTGAAAGGTTTGGCGATAGAATACTTGGAAGGGCACACAATTGTTAACGTCCGGTTTGAATATGACGACGACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTAAAGATCCCTTTGGATCTCTTGTCAGGGCTCTCCGAAGTGCTCTCCGACAACAACAAAGTGATCAGAAGAGAAACAGTAAACAAAGTCAGAAGGGAAACAGTACGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

6.29

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 77
AclWI GGATC 3 cut(s) 73, 220, 243
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 2 cut(s) 324, 328
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 3 cut(s) 73, 220, 243
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 60, 227
AvaII GGWCC 1 cut(s) 56
AxyI CCTNAGG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 1 cut(s) 92
BclI TGATCA 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 91
BsaAI YACGTR 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse21I CCTNAGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 15, 207
BseSI GKGCMC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 150, 252, 264
Bsp143I GATC 4 cut(s) 65, 225, 235, 282
BspCNI CTCAG 2 cut(s) 16, 206
BspPI GGATC 3 cut(s) 73, 220, 243
BssMI GATC 4 cut(s) 65, 225, 235, 282
BssNI GRCGYC 1 cut(s) 74
Bst4CI ACNGT 4 cut(s) 43, 60, 298, 322
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 24, 193, 330
BstKTI GATC 4 cut(s) 68, 228, 238, 285
BstMBI GATC 4 cut(s) 65, 225, 235, 282
BstSLI GKGCMC 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 225, 235
BstYI RGATCY 2 cut(s) 225, 235
Bsu36I CCTNAGG 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 56
CpoI CGGWCCG 1 cut(s) 56
Csp6I GTAC 2 cut(s) 323, 327
CspI CGGWCCG 1 cut(s) 56
CviAII CATG 1 cut(s) 212
CviJI RGCY 1 cut(s) 250
CviKI_1 RGCY 1 cut(s) 250
CviQI GTAC 2 cut(s) 323, 327
DdeI CTNAG 3 cut(s) 24, 193, 330
DpnI GATC 4 cut(s) 67, 227, 237, 284
DpnII GATC 4 cut(s) 65, 225, 235, 282
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco105I TACGTA 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 215
FaiI YATR 2 cut(s) 177, 213
FatI CATG 1 cut(s) 211
FbaI TGATCA 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 252
HapII CCGG 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 1 cut(s) 215
HincII GTYRAC 2 cut(s) 6, 160
HindII GTYRAC 2 cut(s) 6, 160
HinfI GANTC 3 cut(s) 19, 29, 189
HpaI GTTAAC 2 cut(s) 6, 160
HpaII CCGG 1 cut(s) 166
HphI GGTGA 2 cut(s) 60, 227
Hpy166II GTNNAC 3 cut(s) 6, 160, 301
Hpy188I TCNGA 6 cut(s) 56, 205, 256, 268, 287, 311
Hpy188III TCNNGA 2 cut(s) 23, 78
Hpy8I GTNNAC 3 cut(s) 6, 160, 301
Hpy99I CGWCG 5 cut(s) 47, 76, 79, 185, 188
HpyAV CCTTC 2 cut(s) 137, 306
HpyCH4III ACNGT 4 cut(s) 43, 60, 298, 322
HpyCH4IV ACGT 3 cut(s) 74, 162, 325
HpyF3I CTNAG 3 cut(s) 24, 193, 330
HpySE526I ACGT 3 cut(s) 74, 162, 325
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 282
KspAI GTTAAC 2 cut(s) 6, 160
Kzo9I GATC 4 cut(s) 65, 225, 235, 282
LpnPI CCDG 3 cut(s) 36, 179, 231
MaeII ACGT 3 cut(s) 74, 162, 325
MalI GATC 4 cut(s) 67, 227, 237, 284
MboI GATC 4 cut(s) 65, 225, 235, 282
MboII GAAGA 2 cut(s) 96, 300
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 2 cut(s) 225, 235
MhlI GDGCHC 3 cut(s) 150, 252, 264
MluCI AATT 1 cut(s) 153
MmeI TCCRAC 2 cut(s) 34, 291
MnlI CCTC 2 cut(s) 19, 74
MseI TTAA 3 cut(s) 5, 93, 159
MspI CCGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 153
NdeII GATC 4 cut(s) 65, 225, 235, 282
NlaIII CATG 1 cut(s) 215
NmeAIII GCCGAG 1 cut(s) 89
PfeI GAWTC 3 cut(s) 19, 29, 189
Ppu21I YACGTR 1 cut(s) 326
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 2 cut(s) 225, 235
RsaI GTAC 2 cut(s) 324, 328
RsaNI GTAC 2 cut(s) 323, 327
Rsr2I CGGWCCG 1 cut(s) 56
RsrII CGGWCCG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 5, 93, 159
Sau3AI GATC 4 cut(s) 65, 225, 235, 282
Sau96I GGNCC 1 cut(s) 56
SduI GDGCHC 3 cut(s) 150, 252, 264
SetI ASST 4 cut(s) 77, 124, 165, 328
SinI GGWCC 1 cut(s) 56
SnaBI TACGTA 1 cut(s) 326
Sse9I AATT 1 cut(s) 153
TaaI ACNGT 4 cut(s) 43, 60, 298, 322
TaiI ACGT 3 cut(s) 77, 165, 328
TasI AATT 1 cut(s) 153
TfiI GAWTC 3 cut(s) 19, 29, 189
Tru1I TTAA 3 cut(s) 5, 93, 159
Tru9I TTAA 3 cut(s) 5, 93, 159
TscAI CASTG 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 56
ZraI GACGTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.