Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003942.1

Orthogroup ID

OG0003966

Physical Location & Seq

Genomic Coordinates Reverse (-)

19830 .. 20947

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003942.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgaatcctgaggaatccaagaaaaccattgtttcagtcgggccgtttggattatcgaaggggcgaggaaaaccctttgatgatggaatacactcagcagtgaaaggtttggtgatatttcatgttccagagtcagcaattttgtacgtccagtttgaatatgacgacgacggaatctcaacttggtcagacaagcatggtgatagaaagatccctgtgaagtacttgcctgggctcaccaaccaagacgtccccttcagaagagaaagcattatgttcaattatccagacgaattttttacttcagttcatgggtattgtcaagaagactggaccgggtcctttgtcacctcgcttacttttaagaccaacagaaaagcttacggaccatttgggtcgactcaatatcgcaacccgagagactgttttacaattcatgtgcctggaagtaagatagttggttttcatggcagaacaaacaagaagtggttggctgctggtattgcttcaataggagcatacctaaagcctcatgatcaacaaattgaatatcctccgtcaacaacactgaaacaagcaggatatccttcgcaaaccaagctcaagaaagatgacagaccccaataccagaaacattatacaattcaagatattggagttaacggaaaccagggaaaccacaacggagctttctatttgggtgacacgtatatcatctataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

241

Amino Acids

27.21

Weight (kDa)

8.84

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003966)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172631
rosa_laevigata	RLG00000007461 RLG00000007464 RLG00000016814 RLG00000022123 RLG00000022127 RLG00000022128
rosa_multiflora	Rmu_sc0002053.1_g000003 Rmu_sc0003942.1_g000005 Rmu_sc0009180.1_g000003 Rmu_sc0019790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079610 Rroxscaffold_2G00079650 Rroxscaffold_2G00079660 Rroxscaffold_2G00079670 Rroxscaffold_2G00120600 Rroxscaffold_5G00366530
rosa_rugosa	Rorug01G0477900 Rorug02G0246000 Rorug02G0560700 Rorug02G0560800
rosa_samantha	Rh2AG031900 Rh2AG637700 Rh2BG030900 Rh2BG651200 Rh2CG617300 Rh2DG031400 Rh2DG664800 Rh2DG664900 Rh4AG255100 Rh4BG260700 Rh4DG255200
rosa_wichuraiana	Rw2G052690 Rw4G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	2 cut(s)	241, 288
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	146, 224
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	5 cut(s)	158, 280, 510, 548, 647
AjnI	CCWGG	3 cut(s)	229, 442, 669
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	3 cut(s)	380, 601, 689
AluI	AGCT	3 cut(s)	380, 601, 689
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	4 cut(s)	41, 333, 339, 386
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	5 cut(s)	124, 212, 229, 340, 713
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	3 cut(s)	333, 339, 386
AxyI	CCTNAGG	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	3 cut(s)	231, 444, 671
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	414
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	4 cut(s)	231, 337, 444, 671
Bme18I	GGWCC	3 cut(s)	333, 339, 386
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	4 cut(s)	41, 333, 339, 386
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	4 cut(s)	231, 337, 444, 671
BpiI	GAAGAC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	230, 670
Bse1I	ACTGG	2 cut(s)	151, 335
Bse21I	CCTNAGG	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	231, 444, 671
BseDI	CCNNGG	2 cut(s)	230, 670
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	151, 335
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	210, 535
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	151, 335
BssECI	CCNNGG	2 cut(s)	230, 670
BssMI	GATC	2 cut(s)	210, 535
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	3 cut(s)	231, 444, 671
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	708
BstDEI	CTNAG	2 cut(s)	9, 94
BstKTI	GATC	2 cut(s)	213, 538
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	210, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 598
BstNI	CCWGG	3 cut(s)	231, 444, 671
BstSCI	CCNGG	4 cut(s)	229, 335, 442, 669
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 566
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	4 cut(s)	41, 333, 339, 386
Csp6I	GTAC	2 cut(s)	145, 223
CviAII	CATG	6 cut(s)	122, 197, 311, 437, 467, 533
CviJI	RGCY	7 cut(s)	43, 235, 380, 494, 529, 601, 689
CviKI_1	RGCY	7 cut(s)	43, 235, 380, 494, 529, 601, 689
CviQI	GTAC	2 cut(s)	145, 223
DdeI	CTNAG	2 cut(s)	9, 94
DpnI	GATC	2 cut(s)	212, 537
DpnII	GATC	2 cut(s)	210, 535
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	584
Eco47I	GGWCC	3 cut(s)	333, 339, 386
Eco57I	CTGAAG	2 cut(s)	241, 288
Eco81I	CCTNAGG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	3 cut(s)	229, 442, 669
EcoRV	GATATC	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	6 cut(s)	125, 200, 314, 440, 470, 536
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	6 cut(s)	121, 196, 310, 436, 466, 532
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	6 cut(s)	125, 200, 314, 440, 470, 536
HincII	GTYRAC	3 cut(s)	399, 561, 661
HindII	GTYRAC	3 cut(s)	399, 561, 661
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	5 cut(s)	4, 14, 131, 174, 400
HpaI	GTTAAC	1 cut(s)	661
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	5 cut(s)	124, 212, 229, 340, 713
Hpy166II	GTNNAC	3 cut(s)	399, 561, 661
Hpy188I	TCNGA	2 cut(s)	190, 260
Hpy188III	TCNNGA	7 cut(s)	8, 128, 287, 323, 533, 604, 647
Hpy8I	GTNNAC	3 cut(s)	399, 561, 661
Hpy99I	CGWCG	2 cut(s)	170, 173
HpyAV	CCTTC	3 cut(s)	52, 265, 597
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	3 cut(s)	147, 249, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 598
HpyF3I	CTNAG	2 cut(s)	9, 94
HpySE526I	ACGT	3 cut(s)	147, 249, 707
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	6 cut(s)	125, 200, 314, 440, 470, 536
Ksp22I	TGATCA	1 cut(s)	535
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	210, 535
LmnI	GCTCC	2 cut(s)	515, 686
Lsp1109I	GCAGC	1 cut(s)	481
MaeII	ACGT	3 cut(s)	147, 249, 707
MaeIII	GTNAC	2 cut(s)	346, 701
MalI	GATC	2 cut(s)	212, 537
MboI	GATC	2 cut(s)	210, 535
MboII	GAAGA	2 cut(s)	273, 338
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	6 cut(s)	138, 280, 293, 432, 543, 642
MlyI	GAGTC	2 cut(s)	140, 394
MnlI	CCTC	5 cut(s)	4, 59, 361, 540, 564
MseI	TTAA	2 cut(s)	363, 660
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	4 cut(s)	231, 337, 444, 671
MvaI	CCWGG	3 cut(s)	231, 444, 671
MwoI	GCNNNNNNNGC	2 cut(s)	503, 598
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	2 cut(s)	210, 535
NlaIII	CATG	6 cut(s)	125, 200, 314, 440, 470, 536
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	346, 701
PagI	TCATGA	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	4, 14, 174
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	139, 394
PpsI	GAGTC	2 cut(s)	139, 394
Ppu21I	YACGTR	1 cut(s)	708
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	229, 442, 669
PspGI	CCWGG	3 cut(s)	229, 442, 669
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	4 cut(s)	41, 333, 339, 386
PspPPI	RGGWCCY	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	337
RsaI	GTAC	2 cut(s)	146, 224
RsaNI	GTAC	2 cut(s)	145, 223
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	363, 660
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	2 cut(s)	210, 535
Sau96I	GGNCC	4 cut(s)	41, 333, 339, 386
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	2 cut(s)	140, 394
ScrFI	CCNGG	4 cut(s)	231, 337, 444, 671
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	109, 150, 252, 353, 382, 525, 603, 691, 710
SinI	GGWCC	3 cut(s)	333, 339, 386
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	6 cut(s)	138, 280, 293, 432, 543, 642
StyD4I	CCNGG	4 cut(s)	229, 335, 442, 669
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	3 cut(s)	150, 252, 710
TaqI	TCGA	2 cut(s)	56, 398
TasI	AATT	6 cut(s)	138, 280, 293, 432, 543, 642
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	4, 14, 174
Tru1I	TTAA	2 cut(s)	363, 660
Tru9I	TTAA	2 cut(s)	363, 660
TscAI	CASTG	2 cut(s)	105, 573
TseFI	GTSAC	2 cut(s)	346, 701
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	346, 701
TspDTI	ATGAA	5 cut(s)	17, 110, 299, 425, 455
TspGWI	ACGGA	5 cut(s)	186, 399, 546, 678, 699
TspRI	CASTG	2 cut(s)	105, 573
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	3 cut(s)	333, 339, 386
XapI	RAATTY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	398
ZraI	GACGTC	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.