Rorug02G0560800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003966
Physical Location & Seq
Forward (+)
68660020 .. 68660784
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0560800.1

Sequence Viewer

Length: 318 bp
ATGGTGACTGGGGATGTACTGTTTGTAGAAATCGGTGATGATCCTAATCAAGCTGATAAGCAGCAATTGCGAGAGATTTTCAGACAGCTAGGAAAACCGATGTTGAATCAGTGTCCAGGACTCACTTCGCCGGCTTGGGAGACCTACCAAGAATGGGAAGGGGAAAAGATGAAAGCTCGGTTCTATTCAGCTGGAGATTTGCCATCGGATCTGCTGGTAGCTACAGTTTATTTGGAACAAGATGGAGCTGAACTTCTATCGTTAGAACTGGTCGAGCTTGAACCACTGCTAGTTGTTTTGTGTCCTCCAGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

4.06

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 35, 216
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 106, 281
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 7 cut(s) 53, 88, 176, 191, 221, 248, 277
AluI AGCT 7 cut(s) 53, 88, 176, 191, 221, 248, 277
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 35, 216
ApeKI GCWGC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 16, 47
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 211, 236
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 89, 290
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 213, 291
BsaBI GATNNNNATC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 13, 273
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 19
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 13, 273
BseXI GCAGC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 40, 208
BspPI GGATC 2 cut(s) 35, 216
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 2 cut(s) 13, 273
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 2 cut(s) 40, 208
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 21, 226
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 2 cut(s) 43, 211
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 40, 208
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 2 cut(s) 116, 284
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 130
Csp6I GTAC 1 cut(s) 17
CviJI RGCY 8 cut(s) 53, 88, 134, 176, 191, 221, 248, 277
CviKI_1 RGCY 8 cut(s) 53, 88, 134, 176, 191, 221, 248, 277
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 42, 210
DpnII GATC 2 cut(s) 40, 208
Eco31I GGTCTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 2 cut(s) 89, 290
GluI GCNGC 1 cut(s) 62
GsuI CTGGAG 2 cut(s) 213, 291
HapII CCGG 1 cut(s) 131
HinfI GANTC 2 cut(s) 106, 120
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 16, 47
Hpy188I TCNGA 2 cut(s) 83, 208
Hpy188III TCNNGA 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 21, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 315
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 40, 208
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 102, 129, 144, 177, 200, 254
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 89, 290
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 42, 210
MboI GATC 2 cut(s) 40, 208
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 315
MroNI GCCGGC 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 67
NaeI GCCGGC 1 cut(s) 132
NdeII GATC 2 cut(s) 40, 208
NgoMIV GCCGGC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 4
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 2 cut(s) 40, 208
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 117
SetI ASST 8 cut(s) 55, 90, 146, 178, 193, 223, 250, 279
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 1 cut(s) 65
SspMI CTAG 2 cut(s) 89, 290
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 21, 226
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 65
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 2 cut(s) 116, 291
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 2 cut(s) 116, 291
XspI CTAG 2 cut(s) 89, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.