Rw4G022050

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003966
Physical Location & Seq
Forward (+)
46853602 .. 46854704
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022050.1

Sequence Viewer

Length: 726 bp
ATGAATCCTGAGGAATCCAAGAAAACCGTTGTTTCAGTCGGGCCGTTTGGATTATCGAAGGGGCGAGGAAAACCCTTTGATGATGGAATACACTCAGCAGTGAAAGGTTTGGTGATATTTCATGTTCCAGAGTCAGCAATTTTGTACGTCCAGTTTGAATATGACGACGACGGAATCTCAACTTGGTCAGACAAGCATGGTGATAGAAAGATCCCTGTCAAGTACTTGCCTGGGCTCACCAACCAAGACGTCCCCTTCAGACGAGAAAGCATTATGTTCAATTATCCAGACGAATTTTTTACTTCAGTTCATGGGTATTGTCAAGAAGACTGGACCGGGTCCTTTGTCACCTCGCTTACTTTTAAGACCAACAGAAAAGCTTACGGACCATTTGGGTCGACTCAATATCGCAACCCGAGAGACTGTTTTACAATTCATGTGCCTGGAAGTAAGATAGTTGGTTTTCATGGCAGAACAAACAACAAGTGGTTGGCTGCTGGTATTGCTTCAATAGGAGCATACCTAAAGCCTCATGATCAACAAATTGAATATCCTCCGTCAACAACACTGAAACAAGCAGGATATCCTTCGCAAACCAAGCTCAAGAAAGATGACAGACCCCAATACCAGAAACATTATACAATTCAAGATATTGGAGTTAACGGAAACCAGGGAAACCACAACGGAGCTTTCTATTTGGGTGACACGTATATCATCTATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

241

Amino Acids

27.19

Weight (kDa)

8.65

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 13 - 173 3.8e-26 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 398
AclWI GGATC 1 cut(s) 205
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 2 cut(s) 241, 288
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 146, 224
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 5 cut(s) 158, 280, 510, 548, 647
AjnI CCWGG 3 cut(s) 229, 442, 669
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 380, 601, 689
AluI AGCT 3 cut(s) 380, 601, 689
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 415
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 4 cut(s) 41, 333, 339, 386
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 5 cut(s) 124, 212, 229, 340, 713
AvaI CYCGRG 1 cut(s) 415
AvaII GGWCC 3 cut(s) 333, 339, 386
AxyI CCTNAGG 1 cut(s) 9
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 481
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 3 cut(s) 231, 444, 671
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 414
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 4 cut(s) 231, 337, 444, 671
Bme18I GGWCC 3 cut(s) 333, 339, 386
BmeT110I CYCGRG 1 cut(s) 415
BmgT120I GGNCC 4 cut(s) 41, 333, 339, 386
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 4 cut(s) 231, 337, 444, 671
BpiI GAAGAC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 230, 670
Bse1I ACTGG 2 cut(s) 151, 335
Bse21I CCTNAGG 1 cut(s) 9
BseBI CCWGG 3 cut(s) 231, 444, 671
BseDI CCNNGG 2 cut(s) 230, 670
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 151, 335
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 415
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 210, 535
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 151, 335
BssECI CCNNGG 2 cut(s) 230, 670
BssMI GATC 2 cut(s) 210, 535
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 3 cut(s) 231, 444, 671
Bst4CI ACNGT 2 cut(s) 28, 425
BstACI GRCGYC 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 708
BstDEI CTNAG 2 cut(s) 9, 94
BstKTI GATC 2 cut(s) 213, 538
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 210, 535
BstMWI GCNNNNNNNGC 2 cut(s) 503, 598
BstNI CCWGG 3 cut(s) 231, 444, 671
BstSCI CCNGG 4 cut(s) 229, 335, 442, 669
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 566
CciI TCATGA 1 cut(s) 532
Cfr13I GGNCC 4 cut(s) 41, 333, 339, 386
Csp6I GTAC 2 cut(s) 145, 223
CviAII CATG 6 cut(s) 122, 197, 311, 437, 467, 533
CviJI RGCY 7 cut(s) 43, 235, 380, 494, 529, 601, 689
CviKI_1 RGCY 7 cut(s) 43, 235, 380, 494, 529, 601, 689
CviQI GTAC 2 cut(s) 145, 223
DdeI CTNAG 2 cut(s) 9, 94
DpnI GATC 2 cut(s) 212, 537
DpnII GATC 2 cut(s) 210, 535
Eco24I GRGCYC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 584
Eco47I GGWCC 3 cut(s) 333, 339, 386
Eco57I CTGAAG 2 cut(s) 241, 288
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 3 cut(s) 229, 442, 669
EcoRV GATATC 1 cut(s) 584
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 6 cut(s) 125, 200, 314, 440, 470, 536
FaqI GGGAC 1 cut(s) 236
FatI CATG 6 cut(s) 121, 196, 310, 436, 466, 532
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 1 cut(s) 495
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 495
GluI GCNGC 1 cut(s) 495
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 6 cut(s) 125, 200, 314, 440, 470, 536
HincII GTYRAC 3 cut(s) 399, 561, 661
HindII GTYRAC 3 cut(s) 399, 561, 661
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 5 cut(s) 4, 14, 131, 174, 400
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 1 cut(s) 336
HphI GGTGA 5 cut(s) 124, 212, 229, 340, 713
Hpy166II GTNNAC 3 cut(s) 399, 561, 661
Hpy188I TCNGA 2 cut(s) 190, 260
Hpy188III TCNNGA 7 cut(s) 8, 128, 287, 323, 533, 604, 647
Hpy8I GTNNAC 3 cut(s) 399, 561, 661
Hpy99I CGWCG 2 cut(s) 170, 173
HpyAV CCTTC 3 cut(s) 52, 265, 597
HpyCH4III ACNGT 2 cut(s) 28, 425
HpyCH4IV ACGT 3 cut(s) 147, 249, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 598
HpyF3I CTNAG 2 cut(s) 9, 94
HpySE526I ACGT 3 cut(s) 147, 249, 707
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 6 cut(s) 125, 200, 314, 440, 470, 536
Ksp22I TGATCA 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 2 cut(s) 210, 535
LmnI GCTCC 2 cut(s) 515, 686
Lsp1109I GCAGC 1 cut(s) 481
MaeII ACGT 3 cut(s) 147, 249, 707
MaeIII GTNAC 2 cut(s) 346, 701
MalI GATC 2 cut(s) 212, 537
MboI GATC 2 cut(s) 210, 535
MboII GAAGA 1 cut(s) 338
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 6 cut(s) 138, 280, 293, 432, 543, 642
MlyI GAGTC 2 cut(s) 140, 394
MnlI CCTC 5 cut(s) 4, 59, 361, 540, 564
MseI TTAA 2 cut(s) 363, 660
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 4 cut(s) 231, 337, 444, 671
MvaI CCWGG 3 cut(s) 231, 444, 671
MwoI GCNNNNNNNGC 2 cut(s) 503, 598
NciI CCSGG 1 cut(s) 337
NdeII GATC 2 cut(s) 210, 535
NlaIII CATG 6 cut(s) 125, 200, 314, 440, 470, 536
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 346, 701
PagI TCATGA 1 cut(s) 532
PfeI GAWTC 3 cut(s) 4, 14, 174
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 2 cut(s) 139, 394
PpsI GAGTC 2 cut(s) 139, 394
Ppu21I YACGTR 1 cut(s) 708
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 3 cut(s) 229, 442, 669
PspGI CCWGG 3 cut(s) 229, 442, 669
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 4 cut(s) 41, 333, 339, 386
PspPPI RGGWCCY 1 cut(s) 339
PsuI RGATCY 1 cut(s) 210
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 2 cut(s) 146, 224
RsaNI GTAC 2 cut(s) 145, 223
SalI GTCGAC 1 cut(s) 397
SaqAI TTAA 2 cut(s) 363, 660
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 2 cut(s) 210, 535
Sau96I GGNCC 4 cut(s) 41, 333, 339, 386
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 2 cut(s) 140, 394
ScrFI CCNGG 4 cut(s) 231, 337, 444, 671
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 109, 150, 252, 353, 382, 525, 603, 691, 710
SinI GGWCC 3 cut(s) 333, 339, 386
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 6 cut(s) 138, 280, 293, 432, 543, 642
StyD4I CCNGG 4 cut(s) 229, 335, 442, 669
TaaI ACNGT 2 cut(s) 28, 425
TaiI ACGT 3 cut(s) 150, 252, 710
TaqI TCGA 2 cut(s) 56, 398
TasI AATT 6 cut(s) 138, 280, 293, 432, 543, 642
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 3 cut(s) 4, 14, 174
Tru1I TTAA 2 cut(s) 363, 660
Tru9I TTAA 2 cut(s) 363, 660
TscAI CASTG 2 cut(s) 105, 573
TseFI GTSAC 2 cut(s) 346, 701
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 2 cut(s) 346, 701
TspDTI ATGAA 5 cut(s) 17, 110, 299, 425, 455
TspGWI ACGGA 5 cut(s) 186, 399, 546, 678, 699
TspRI CASTG 2 cut(s) 105, 573
Tth111I GACNNNGTC 1 cut(s) 337
VpaK11BI GGWCC 3 cut(s) 333, 339, 386
XapI RAATTY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 398
ZraI GACGTC 1 cut(s) 250
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.