Rroxscaffold_2G00079610

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003966
Physical Location & Seq
Forward (+)
2577867 .. 2587427
9561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079610.1

Sequence Viewer

Length: 1059 bp
ATGTTGGGCGTGGAAGATCTAGTTACATGTACATCTATTTTCATTGATTTCATTTTGAAATTTAAAGAATTAGAGAAAAAAATCGAGTTGCCTCCCACCTGCATCGTAGCTGGAAAGCCTAAGCCCTACATGTGTGATCCAGCTGATGTGAGGCTGGAAAAGTTAGTGGGCTACAGCTCACTTAACACTTTATCCATCAGAGCCTTCACATCCACCACCATTGCAATGAGCTCAAAATCACTCAAATATTCCTTAGTAGCTAGCTTAGCTTCAATTATCCATCCTCTCGTTCTCAAATTCAAGTTCATTCATGTACGTACAGCAGCTCGATCTCAGTCGCCCTCTGTTCTCCTTCGGTACGTCGACGCTATTAACTACCTCCAACGTACAATGAATCCTGAGGAATCCAAGAAAACCGTTAATGTTGCAGTCGGACCGTTTGGATCATCAACGGAGCGAGGAAAACCCTTTAATGATGGAATACACTCAGCAGTGAAAGGTTTCGCGTTAGAATATACGGAAGGGTGCATAATTACCAACGTCCGGTTTGAATATGACGACAACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGCAAAGACCGGTTTGGAGCTCTTGTCAGGGCTCATGGAAGTGCTCTCAAACGACATCAAAGTCAGAAGAGAAAGCATTCAATTCAATTATCCAGGAGAATTTTTTACTGCAGTTGATGGACGGTATTGTGAAACCTTTTTCGGGGACGGTGGCGTCGCATCACTTACTTTTAAGACCAACAGAAATACTTACGGACCCTTTGGTTCGACGTCTCAAAATTTCAAACTGACGAAACTCTCCTGTTTCTCAATTCATGTGCCCGGAAGTAAGATTGTTGGCTTTCATGGCAGATCAAAGAGTAAGTGGTCGGGTGGTATTTATTCAATAGGAGCCTACCTAAAGCCTTACCATCAACAAATTGAATACCCTCAAAACCAGAAACGTTACGCGGTTAAAGATATTCAAGTTAGTGGAAACAAGGGGAAACCACAATGCAGAATTCCATCTGGGCGACACGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

352

Amino Acids

39.11

Weight (kDa)

9.35

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 144 - 311 1.8e-22 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
AasI GACNNNNNNGTC 2 cut(s) 656, 749
AatII GACGTC 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 363
AccII CGCG 2 cut(s) 506, 986
AciI CCGC 1 cut(s) 986
AclI AACGTT 1 cut(s) 979
AclWI GGATC 2 cut(s) 131, 451
AcsI RAATTY 5 cut(s) 59, 296, 695, 814, 1035
AcyI GRCGYC 2 cut(s) 750, 806
AfaI GTAC 5 cut(s) 31, 315, 319, 359, 388
AfiI CCNNNNNNNGG 2 cut(s) 543, 738
AflIII ACRYGT 3 cut(s) 26, 129, 1051
AgeI ACCGGT 1 cut(s) 605
AjnI CCWGG 1 cut(s) 688
AjuI GAANNNNNNNTTGG 2 cut(s) 559, 591
AluBI AGCT 9 cut(s) 110, 143, 177, 231, 260, 264, 269, 326, 616
AluI AGCT 9 cut(s) 110, 143, 177, 231, 260, 264, 269, 326, 616
Alw21I GWGCWC 3 cut(s) 233, 618, 642
Alw26I GTCTC 1 cut(s) 813
AlwI GGATC 2 cut(s) 131, 451
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 5 cut(s) 59, 296, 695, 814, 1035
AsiGI ACCGGT 1 cut(s) 605
Asp700I GAANNNNTTC 2 cut(s) 500, 672
AspS9I GGNCC 2 cut(s) 434, 791
AsuC2I CCSGG 1 cut(s) 858
AsuHPI GGTGA 1 cut(s) 605
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 2 cut(s) 434, 791
AxyI CCTNAGG 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 858
BanII GRGCYC 3 cut(s) 233, 618, 630
Bbv12I GWGCWC 3 cut(s) 233, 618, 642
BbvI GCAGC 1 cut(s) 335
BccI CCATC 6 cut(s) 203, 288, 470, 707, 954, 1048
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 813
BfaI CTAG 2 cut(s) 20, 261
BfmI CTRYAG 2 cut(s) 172, 705
BfuAI ACCTGC 1 cut(s) 107
BglII AGATCT 1 cut(s) 16
BisI GCNGC 1 cut(s) 324
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 690, 858
Bme18I GGWCC 2 cut(s) 434, 791
BmgT120I GGNCC 2 cut(s) 434, 791
BmiI GGNNCC 2 cut(s) 793, 928
BmrFI CCNGG 2 cut(s) 690, 858
BmsI GCATC 2 cut(s) 111, 764
BmtI GCTAGC 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 858
BsaAI YACGTR 2 cut(s) 317, 1054
BsaHI GRCGYC 2 cut(s) 750, 806
BsaWI WCCGGW 2 cut(s) 543, 605
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 543, 738
Bse118I RCCGGY 1 cut(s) 605
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 2 cut(s) 219, 231
BseBI CCWGG 1 cut(s) 690
BseGI GGATG 2 cut(s) 209, 280
BseLI CCNNNNNNNGG 2 cut(s) 543, 738
BseMI GCAATG 2 cut(s) 219, 231
BseMII CTCAG 4 cut(s) 347, 390, 501, 585
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 1 cut(s) 335
Bsh1236I CGCG 2 cut(s) 506, 986
BshTI ACCGGT 1 cut(s) 605
BsiHKAI GWGCWC 3 cut(s) 233, 618, 642
BsiSI CCGG 3 cut(s) 544, 606, 858
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 2 cut(s) 543, 738
BsmAI GTCTC 1 cut(s) 813
BsmBI CGTCTC 1 cut(s) 813
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 1 cut(s) 672
Bsp1286I GDGCHC 5 cut(s) 233, 618, 630, 642, 858
Bsp1407I TGTACA 1 cut(s) 29
Bsp143I GATC 5 cut(s) 16, 136, 329, 443, 887
Bsp1720I GCTNAGC 1 cut(s) 265
BspACI CCGC 1 cut(s) 986
BspCNI CTCAG 4 cut(s) 346, 391, 500, 584
BspFNI CGCG 2 cut(s) 506, 986
BspLI GGNNCC 2 cut(s) 793, 928
BspMAI CTGCAG 1 cut(s) 709
BspMI ACCTGC 1 cut(s) 107
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 2 cut(s) 131, 451
BsrDI GCAATG 2 cut(s) 219, 231
BsrFI RCCGGY 1 cut(s) 605
BsrGI TGTACA 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 605
BssMI GATC 5 cut(s) 16, 136, 329, 443, 887
BssNI GRCGYC 2 cut(s) 750, 806
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 4 cut(s) 418, 438, 720, 746
Bst6I CTCTTC 1 cut(s) 658
BstACI GRCGYC 2 cut(s) 750, 806
BstAUI TGTACA 1 cut(s) 29
BstBAI YACGTR 2 cut(s) 317, 1054
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 7 cut(s) 120, 253, 265, 333, 399, 487, 571
BstF5I GGATG 2 cut(s) 209, 280
BstFNI CGCG 2 cut(s) 506, 986
BstKTI GATC 5 cut(s) 19, 139, 332, 446, 890
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 5 cut(s) 16, 136, 329, 443, 887
BstMWI GCNNNNNNNGC 2 cut(s) 266, 882
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 2 cut(s) 30, 133
BstSCI CCNGG 2 cut(s) 688, 856
BstSFI CTRYAG 2 cut(s) 172, 705
BstSLI GKGCMC 1 cut(s) 858
BstSNI TACGTA 1 cut(s) 317
BstUI CGCG 2 cut(s) 506, 986
BstV1I GCAGC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 209, 280
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 434, 791
CpoI CGGWCCG 1 cut(s) 434
CseI GACGC 2 cut(s) 374, 739
Csp6I GTAC 5 cut(s) 30, 314, 318, 358, 387
CspAI ACCGGT 1 cut(s) 605
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CspI CGGWCCG 1 cut(s) 434
CviAII CATG 7 cut(s) 27, 130, 311, 590, 631, 851, 881
CviQI GTAC 5 cut(s) 30, 314, 318, 358, 387
DdeI CTNAG 7 cut(s) 120, 253, 265, 333, 399, 487, 571
DpnI GATC 5 cut(s) 18, 138, 331, 445, 889
DpnII GATC 5 cut(s) 16, 136, 329, 443, 887
DraI TTTAAA 1 cut(s) 64
DrdI GACNNNNNNGTC 2 cut(s) 656, 749
DseDI GACNNNNNNGTC 2 cut(s) 656, 749
Eam1104I CTCTTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 658
Ecl136II GAGCTC 2 cut(s) 231, 616
Eco105I TACGTA 1 cut(s) 317
Eco24I GRGCYC 3 cut(s) 233, 618, 630
Eco47I GGWCC 2 cut(s) 434, 791
Eco53kI GAGCTC 2 cut(s) 231, 616
Eco81I CCTNAGG 1 cut(s) 399
EcoICRI GAGCTC 2 cut(s) 231, 616
EcoRI GAATTC 1 cut(s) 1035
EcoRII CCWGG 1 cut(s) 688
EcoT38I GRGCYC 3 cut(s) 233, 618, 630
Esp3I CGTCTC 1 cut(s) 813
FaeI CATG 7 cut(s) 30, 133, 314, 593, 634, 854, 884
FaqI GGGAC 1 cut(s) 755
FatI CATG 7 cut(s) 26, 129, 310, 589, 630, 850, 880
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 2 cut(s) 196, 267
FriOI GRGCYC 3 cut(s) 233, 618, 630
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 20, 261
GluI GCNGC 1 cut(s) 324
HapII CCGG 3 cut(s) 544, 606, 858
HgaI GACGC 2 cut(s) 374, 739
Hin1I GRCGYC 2 cut(s) 750, 806
Hin1II CATG 7 cut(s) 30, 133, 314, 593, 634, 854, 884
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 3 cut(s) 394, 404, 567
HpaII CCGG 3 cut(s) 544, 606, 858
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 200, 434, 583, 662
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 4 cut(s) 365, 368, 755, 808
HpyAV CCTTC 3 cut(s) 214, 362, 515
HpyCH4III ACNGT 4 cut(s) 418, 438, 720, 746
HpyCH4IV ACGT 7 cut(s) 316, 360, 385, 540, 806, 979, 1053
HpyCH4V TGCA 6 cut(s) 102, 224, 428, 528, 707, 1032
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 882
HpyF3I CTNAG 7 cut(s) 120, 253, 265, 333, 399, 487, 571
HpySE526I ACGT 7 cut(s) 316, 360, 385, 540, 806, 979, 1053
Hsp92I GRCGYC 2 cut(s) 750, 806
Hsp92II CATG 7 cut(s) 30, 133, 314, 593, 634, 854, 884
Kzo9I GATC 5 cut(s) 16, 136, 329, 443, 887
LmnI GCTCC 3 cut(s) 454, 613, 926
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 111, 764
MaeI CTAG 2 cut(s) 20, 261
MaeII ACGT 7 cut(s) 316, 360, 385, 540, 806, 979, 1053
MaeIII GTNAC 2 cut(s) 22, 980
MalI GATC 5 cut(s) 18, 138, 331, 445, 889
MboI GATC 5 cut(s) 16, 136, 329, 443, 887
MboII GAAGA 2 cut(s) 26, 675
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 5 cut(s) 233, 618, 630, 642, 858
MmeI TCCRAC 2 cut(s) 406, 412
MnlI CCTC 8 cut(s) 102, 144, 294, 352, 389, 394, 452, 975
MroXI GAANNNNTTC 2 cut(s) 500, 672
MseI TTAA 7 cut(s) 63, 183, 372, 420, 471, 768, 990
MslI CAYNNNNRTG 2 cut(s) 224, 635
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 3 cut(s) 544, 606, 858
MspR9I CCNGG 2 cut(s) 690, 858
Mva1269I GAATGC 1 cut(s) 672
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 2 cut(s) 506, 986
MwoI GCNNNNNNNGC 2 cut(s) 266, 882
NciI CCSGG 1 cut(s) 858
NdeII GATC 5 cut(s) 16, 136, 329, 443, 887
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 7 cut(s) 30, 133, 314, 593, 634, 854, 884
NlaIV GGNNCC 2 cut(s) 793, 928
NspI RCATGY 2 cut(s) 30, 133
PaqCI CACCTGC 1 cut(s) 107
PciI ACATGT 2 cut(s) 26, 129
PctI GAATGC 1 cut(s) 672
PdmI GAANNNNTTC 2 cut(s) 500, 672
PfeI GAWTC 3 cut(s) 394, 404, 567
PfoI TCCNGGA 1 cut(s) 688
PinAI ACCGGT 1 cut(s) 605
PkrI GCNGC 1 cut(s) 325
Ppu21I YACGTR 2 cut(s) 317, 1054
PscI ACATGT 2 cut(s) 26, 129
Psp124BI GAGCTC 2 cut(s) 233, 618
Psp1406I AACGTT 1 cut(s) 979
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 793, 928
PspPI GGNCC 2 cut(s) 434, 791
PstI CTGCAG 1 cut(s) 709
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 5 cut(s) 31, 315, 319, 359, 388
RsaNI GTAC 5 cut(s) 30, 314, 318, 358, 387
RseI CAYNNNNRTG 2 cut(s) 224, 635
Rsr2I CGGWCCG 1 cut(s) 434
RsrII CGGWCCG 1 cut(s) 434
SacI GAGCTC 2 cut(s) 233, 618
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 7 cut(s) 63, 183, 372, 420, 471, 768, 990
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 5 cut(s) 16, 136, 329, 443, 887
Sau96I GGNCC 2 cut(s) 434, 791
ScrFI CCNGG 2 cut(s) 690, 858
SduI GDGCHC 5 cut(s) 233, 618, 630, 642, 858
SfaNI GCATC 2 cut(s) 111, 764
SfcI CTRYAG 2 cut(s) 172, 705
SgrDI CGTCGACG 1 cut(s) 362
SinI GGWCC 2 cut(s) 434, 791
SmiMI CAYNNNNRTG 2 cut(s) 224, 635
SnaBI TACGTA 1 cut(s) 317
SsiI CCGC 1 cut(s) 986
SspI AATATT 1 cut(s) 248
SspMI CTAG 2 cut(s) 20, 261
SstI GAGCTC 2 cut(s) 233, 618
StyD4I CCNGG 2 cut(s) 688, 856
TaaI ACNGT 4 cut(s) 418, 438, 720, 746
TaiI ACGT 7 cut(s) 319, 363, 388, 543, 809, 982, 1056
TaqI TCGA 4 cut(s) 84, 328, 363, 803
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 3 cut(s) 394, 404, 567
Tru1I TTAA 7 cut(s) 63, 183, 372, 420, 471, 768, 990
Tru9I TTAA 7 cut(s) 63, 183, 372, 420, 471, 768, 990
TscAI CASTG 1 cut(s) 498
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 7 cut(s) 31, 40, 295, 299, 407, 839, 869
TspGWI ACGGA 4 cut(s) 467, 533, 579, 804
TspRI CASTG 1 cut(s) 498
VpaK11BI GGWCC 2 cut(s) 434, 791
XapI RAATTY 5 cut(s) 59, 296, 695, 814, 1035
XceI RCATGY 2 cut(s) 30, 133
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 2 cut(s) 500, 672
XspI CTAG 2 cut(s) 20, 261
ZraI GACGTC 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.