Rh2BG030900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003966
Physical Location & Seq
Forward (+)
2053133 .. 2055855
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG030900.1

Sequence Viewer

Length: 780 bp
ATGAGTCTTGAGCAATCCAAGAAAACTGTTGTTTCAGTCGGGCCGTTTGGGGAATTAAATAAGCGAGCAATACCCTTTGATGATGGAGTACACTCAGCAGTGAAAGGTTTGGAGATAGTCCATTGGAAAGCTGAAAGGGGACATATTCTCAACGTCCGGTTTGAATATGAAGACGACGGAATCTCAGTTTGGGGAGACAAGCATGGTACAAATATCATTTGGGATGTCTTGGGAGGGCTGCTCGCAACCGACGGCGACATGAGAAGAGAATGCATTAGGTTCAATTATCCAGACGAATTTTTGACTTCAGTTTATGGAAATTATGAAGCAAACTTGTCGGGGTCCTGGCTATCCTCACTTACTTTTAACACTAACAGAAAAACTTACGGACCCTTTGGATCGACTCCAAATCGCAATCGGAGAAGCTATTTCTCAATTCATGTGCCTGGAAGTAAGATTGTTGGTTTTCATGGCAGATCACACAGGTGGTGGAGTACCAATTTTGACATAGGAGCATACCTAAAGCCTATTGATCAACAAAGTGAATATGCAACTTCAACAGCACTGATGCTTTATCCATCAGAGCCTCCACATCAACCTGGATATCCTTCTCAAACAAAGCTCAATAAAGATGATAGACCTCAAAACCAGAAACATTACGCAGTTTCAAATATTCGAGTTAGCAGAAATGAGGGAGACCACAACGGAGCTTTCTATTTGGGCGACAGGTATAAATATACGAACTATTATATCGAAAAGGCAGACATAGCGCACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

259

Amino Acids

29.59

Weight (kDa)

8.45

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 13 - 162 3.4e-22 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 406
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 3 cut(s) 90, 208, 496
AgsI TTSAA 4 cut(s) 164, 283, 558, 669
AjnI CCWGG 3 cut(s) 344, 445, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AleI CACNNNNGTG 1 cut(s) 484
AluBI AGCT 4 cut(s) 131, 426, 622, 710
AluI AGCT 4 cut(s) 131, 426, 622, 710
Alw26I GTCTC 2 cut(s) 189, 690
AlwI GGATC 1 cut(s) 406
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 296
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 3 cut(s) 41, 342, 389
AvaII GGWCC 2 cut(s) 342, 389
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 77, 586
BceAI ACGGC 2 cut(s) 28, 268
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 3 cut(s) 346, 447, 600
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 2 cut(s) 189, 690
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 3 cut(s) 346, 447, 600
Bme18I GGWCC 2 cut(s) 342, 389
BmgT120I GGNCC 3 cut(s) 41, 342, 389
BmiI GGNNCC 2 cut(s) 343, 391
BmrFI CCNGG 3 cut(s) 346, 447, 600
BmsI GCATC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpuEI CTTGAG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 690
BsaWI WCCGGW 1 cut(s) 156
BseBI CCWGG 3 cut(s) 346, 447, 600
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 108, 198
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 189, 690
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 690
Bsp143I GATC 3 cut(s) 398, 476, 532
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 107, 197
BspLI GGNNCC 2 cut(s) 343, 391
BspPI GGATC 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 690
BssMI GATC 3 cut(s) 398, 476, 532
Bst2UI CCWGG 3 cut(s) 346, 447, 600
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 66, 243
BstDEI CTNAG 2 cut(s) 94, 184
BstF5I GGATG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 3 cut(s) 401, 479, 535
BstMAI GTCTC 2 cut(s) 189, 690
BstMBI GATC 3 cut(s) 398, 476, 532
BstMWI GCNNNNNNNGC 1 cut(s) 767
BstNI CCWGG 3 cut(s) 346, 447, 600
BstSCI CCNGG 3 cut(s) 344, 445, 598
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 563
Cac8I GCNNGC 2 cut(s) 66, 243
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 3 cut(s) 41, 342, 389
Csp6I GTAC 3 cut(s) 89, 207, 495
CviAII CATG 4 cut(s) 203, 259, 440, 470
CviJI RGCY 9 cut(s) 43, 131, 238, 349, 426, 526, 586, 622, 710
CviKI_1 RGCY 9 cut(s) 43, 131, 238, 349, 426, 526, 586, 622, 710
CviQI GTAC 3 cut(s) 89, 207, 495
DdeI CTNAG 2 cut(s) 94, 184
DpnI GATC 3 cut(s) 400, 478, 534
DpnII GATC 3 cut(s) 398, 476, 532
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 690
Eco32I GATATC 1 cut(s) 605
Eco47I GGWCC 2 cut(s) 342, 389
Eco57I CTGAAG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 344, 445, 598
EcoRV GATATC 1 cut(s) 605
EcoT22I ATGCAT 1 cut(s) 275
FaeI CATG 4 cut(s) 206, 262, 443, 473
FaqI GGGAC 1 cut(s) 153
FatI CATG 4 cut(s) 202, 258, 439, 469
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 239
GlaI GCGC 1 cut(s) 771
GluI GCNGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 772
Hin1II CATG 4 cut(s) 206, 262, 443, 473
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HinfI GANTC 3 cut(s) 4, 180, 403
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 420, 583
Hpy188III TCNNGA 2 cut(s) 8, 290
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 179, 254
HpyAV CCTTC 1 cut(s) 618
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 273, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 767
HpyF3I CTNAG 2 cut(s) 94, 184
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 4 cut(s) 206, 262, 443, 473
HspAI GCGC 1 cut(s) 770
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 3 cut(s) 398, 476, 532
LmnI GCTCC 2 cut(s) 512, 707
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 558
MaeII ACGT 1 cut(s) 153
MalI GATC 3 cut(s) 400, 478, 534
MboI GATC 3 cut(s) 398, 476, 532
MboII GAAGA 2 cut(s) 182, 276
MluCI AATT 6 cut(s) 53, 283, 296, 319, 435, 499
MlyI GAGTC 2 cut(s) 13, 397
MnlI CCTC 5 cut(s) 227, 364, 597, 651, 685
Mph1103I ATGCAT 1 cut(s) 275
MseI TTAA 2 cut(s) 56, 366
MslI CAYNNNNRTG 1 cut(s) 484
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 3 cut(s) 346, 447, 600
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 3 cut(s) 346, 447, 600
MwoI GCNNNNNNNGC 1 cut(s) 767
NdeII GATC 3 cut(s) 398, 476, 532
NlaIII CATG 4 cut(s) 206, 262, 443, 473
NlaIV GGNNCC 2 cut(s) 343, 391
NsiI ATGCAT 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 484
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 2 cut(s) 12, 397
PpsI GAGTC 2 cut(s) 12, 397
PpuMI RGGWCCY 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 342
Psp6I CCWGG 3 cut(s) 344, 445, 598
PspGI CCWGG 3 cut(s) 344, 445, 598
PspN4I GGNNCC 2 cut(s) 343, 391
PspPI GGNCC 3 cut(s) 41, 342, 389
PspPPI RGGWCCY 1 cut(s) 342
RsaI GTAC 3 cut(s) 90, 208, 496
RsaNI GTAC 3 cut(s) 89, 207, 495
RseI CAYNNNNRTG 1 cut(s) 484
SaqAI TTAA 2 cut(s) 56, 366
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 3 cut(s) 398, 476, 532
Sau96I GGNCC 3 cut(s) 41, 342, 389
SchI GAGTC 2 cut(s) 13, 397
ScrFI CCNGG 3 cut(s) 346, 447, 600
SfaNI GCATC 1 cut(s) 558
SinI GGWCC 2 cut(s) 342, 389
SmiMI CAYNNNNRTG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 6 cut(s) 53, 283, 296, 319, 435, 499
SspI AATATT 1 cut(s) 673
StyD4I CCNGG 3 cut(s) 344, 445, 598
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 401, 676, 753
TasI AATT 6 cut(s) 53, 283, 296, 319, 435, 499
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 56, 366
Tru9I TTAA 2 cut(s) 56, 366
TscAI CASTG 2 cut(s) 105, 570
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 183, 339, 428, 458
TspGWI ACGGA 3 cut(s) 192, 402, 720
TspRI CASTG 2 cut(s) 105, 570
VpaK11BI GGWCC 2 cut(s) 342, 389
XapI RAATTY 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.