Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002053.1

Orthogroup ID

OG0003966

Physical Location & Seq

Genomic Coordinates Reverse (-)

11442 .. 12163

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002053.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcagattagattcaattatccggacgaatatttaactgcagttcatggacggtattgtgacaacttgttgggcgccgtatgcgtcgtcaactcacttacttttaagaccaatagaaatacttacggaccctttggttggacgtctcaaaatgaaaaactgatcaacttattcccttgtttctcaattcatatgcctggaagtgagattgttggctttcatggcagatcaagcaggagtaagtggttgggtggtatttattcaataggagcctatgtaaagccttatcatcaacaaattgaataccctccgtcaaaagctctgatgctttatccatcagaacctccacgtctacctgaatttcattctcaaaccaagctcaataaagatgacagacctcaaaaccataaacattatacagtttcaaatattcaagttagcagaaatgagggagatcacaacggagctttccatttgggcgacatatatgcaaactgttatataaacaaacaagagtcgtcctcaatcggttacgccttgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

181

Amino Acids

20.71

Weight (kDa)

8.83

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003966)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172631
rosa_laevigata	RLG00000007461 RLG00000007464 RLG00000016814 RLG00000022123 RLG00000022127 RLG00000022128
rosa_multiflora	Rmu_sc0002053.1_g000003 Rmu_sc0003942.1_g000005 Rmu_sc0009180.1_g000003 Rmu_sc0019790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079610 Rroxscaffold_2G00079650 Rroxscaffold_2G00079660 Rroxscaffold_2G00079670 Rroxscaffold_2G00120600 Rroxscaffold_5G00366530
rosa_rugosa	Rorug01G0477900 Rorug02G0246000 Rorug02G0560700 Rorug02G0560800
rosa_samantha	Rh2AG031900 Rh2AG637700 Rh2BG030900 Rh2BG651200 Rh2CG617300 Rh2DG031400 Rh2DG664800 Rh2DG664900 Rh4AG255100 Rh4BG260700 Rh4DG255200
rosa_wichuraiana	Rw2G052690 Rw4G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	75, 143
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	16, 264, 302, 426, 434
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	3 cut(s)	320, 379, 467
AluI	AGCT	3 cut(s)	320, 379, 467
Alw26I	GTCTC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	74
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	1 cut(s)	62
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	76, 130, 271
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BsaHI	GRCGYC	2 cut(s)	75, 143
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	150
BsmBI	CGTCTC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	162, 227, 454
BspEI	TCCGGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	76, 130, 271
BspMAI	CTGCAG	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	74
BssMI	GATC	3 cut(s)	162, 227, 454
BssNI	GRCGYC	2 cut(s)	75, 143
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	54, 421, 497
BstACI	GRCGYC	2 cut(s)	75, 143
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	165, 230, 457
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	162, 227, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 222, 231
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	350
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	73
CviAII	CATG	2 cut(s)	47, 221
CviJI	RGCY	6 cut(s)	216, 272, 283, 320, 379, 467
CviKI_1	RGCY	6 cut(s)	216, 272, 283, 320, 379, 467
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	3 cut(s)	164, 229, 456
DpnII	GATC	3 cut(s)	162, 227, 454
Eco47I	GGWCC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	196
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	50, 224
FatI	CATG	2 cut(s)	46, 220
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	352
GlaI	GCGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	78
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	75, 143
Hin1II	CATG	2 cut(s)	50, 224
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	12, 515
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	91, 353
Hpy188I	TCNGA	2 cut(s)	324, 340
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	2 cut(s)	91, 353
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	3 cut(s)	54, 421, 497
HpyCH4IV	ACGT	2 cut(s)	143, 349
HpyCH4V	TGCA	3 cut(s)	4, 41, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 222, 231
HpySE526I	ACGT	2 cut(s)	143, 349
Hsp92I	GRCGYC	2 cut(s)	75, 143
Hsp92II	CATG	2 cut(s)	50, 224
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	162, 227, 454
LmnI	GCTCC	2 cut(s)	269, 464
LpnPI	CCDG	5 cut(s)	36, 183, 210, 220, 369
LweI	GCATC	1 cut(s)	315
MaeII	ACGT	2 cut(s)	143, 349
MaeIII	GTNAC	2 cut(s)	59, 530
MalI	GATC	3 cut(s)	164, 229, 456
MboI	GATC	3 cut(s)	162, 227, 454
MluCI	AATT	4 cut(s)	16, 186, 297, 359
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	318, 354, 408, 442, 532
MroI	TCCGGA	1 cut(s)	22
MseI	TTAA	2 cut(s)	35, 105
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	81, 222, 231
NarI	GGCGCC	1 cut(s)	75
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	3 cut(s)	162, 227, 454
NlaIII	CATG	2 cut(s)	50, 224
NlaIV	GGNNCC	3 cut(s)	76, 130, 271
NmuCI	GTSAC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	3 cut(s)	76, 130, 271
PspPI	GGNCC	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	35, 105
Sau3AI	GATC	3 cut(s)	162, 227, 454
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	8 cut(s)	146, 322, 346, 352, 358, 381, 400, 469
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
Sse9I	AATT	4 cut(s)	16, 186, 297, 359
SspDI	GGCGCC	1 cut(s)	74
SspI	AATATT	2 cut(s)	32, 430
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	54, 421, 497
TaiI	ACGT	2 cut(s)	146, 352
TasI	AATT	4 cut(s)	16, 186, 297, 359
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	35, 105
Tru9I	TTAA	2 cut(s)	35, 105
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	35, 168, 179, 209, 353
TspGWI	ACGGA	3 cut(s)	141, 300, 477
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	352
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.