Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003966

Physical Location & Seq

Genomic Coordinates Reverse (-)

56714363 .. 56719245

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0477900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGTACATCTTTACTTTTTGTGACGGTGCTGTGGGAGTTTTTGATGCTGATAGCTTAAGACTCAGATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGCGGTGGCAACCCCTCCTATCCTCTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGACGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAGCTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCCTTCCAATTCATCAAATCCGTCTCCTAGTGGTCAAGCATCAGAACTTCCTTCCAGATCCAAGGAGTCCAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACTAAAGGTGATTACATCCACTGGGAGATTTTGGCATGATTGGGACAAATCAATTAAAGAGCATGCTATCCTTTCAGCTGAAGCAGAGTATCCTGATGCAGAAAAGACTATTGAGCAGCAAAATACTACTTTAGGAGAAACCTACCTAGAACTGGCCGGTGAAGAGATCCTATTGGATGCGCGCAGCATCTACCCGAATCTCTCAAGGCTTGCTCTAGCTCTAGAAAAGAACAGCCTATTGGTGACATCTATGCTGACTATTTCACTGGATCCGTGTCCGCATTCAGTATTGCAAAAGACAGATGAATCAGAAAAAGTAAGTGAAGAACCTAAACTTCACTCTGACGCAAATGGGGTGGAACCTATGGTAGGAGCGGCATTGTTGCTGTTATGTGTTTTCAAGGGGTATAAGTATGAAGATGGTGATGAGATAATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGGTGAGTCCAATGGAATTAGTAAAGGTAATGATCATGCAACCCCATTTAGCAAAGCTGGATTGTTCAGTAAAATGTCATTTTGGTGGTTAAATTCATTGATGAAAAAAGGTAGGGAGAAAACTCAGGAGGATGAAGATATACCGAAGTTGCGAGATGAAGATCGAGCAGAAAGTTGTCATGGGAAATTCTTGGAGCAACTGAGGAAGCAGAAACAAATTGAGCCATCTTCCCAGTCATCAGTGTTAAAGACTATAATCCTATTCCACTGGAAGGAGATTTCACTATCTGGTTTGTTTGCTTTGCTGAAGATACTTACTATAAGTGCTGGACTGCTGGTCCTTTGCTTCTCAATGCCTTCATTAGGGTTGCAAAGGGAAATGAAAGTTCCGAGCACGAAGGCAGTGGTACTTCAGGTGCAGGCTTATTGCTTTGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

425

Amino Acids

46.64

Weight (kDa)

5.22

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003966)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172631
rosa_laevigata	RLG00000007461 RLG00000007464 RLG00000016814 RLG00000022123 RLG00000022127 RLG00000022128
rosa_multiflora	Rmu_sc0002053.1_g000003 Rmu_sc0003942.1_g000005 Rmu_sc0009180.1_g000003 Rmu_sc0019790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079610 Rroxscaffold_2G00079650 Rroxscaffold_2G00079660 Rroxscaffold_2G00079670 Rroxscaffold_2G00120600 Rroxscaffold_5G00366530
rosa_rugosa	Rorug01G0477900 Rorug02G0246000 Rorug02G0560700 Rorug02G0560800
rosa_samantha	Rh2AG031900 Rh2AG637700 Rh2BG030900 Rh2BG651200 Rh2CG617300 Rh2DG031400 Rh2DG664800 Rh2DG664900 Rh4AG255100 Rh4BG260700 Rh4DG255200
rosa_wichuraiana	Rw2G052690 Rw4G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	66, 190
AccBSI	CCGCTC	1 cut(s)	740
AccII	CGCG	1 cut(s)	547
AciI	CCGC	3 cut(s)	111, 644, 740
AclWI	GGATC	4 cut(s)	312, 526, 629, 642
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	928, 1022
AcuI	CTGAAG	4 cut(s)	248, 465, 1163, 1232
AfaI	GTAC	2 cut(s)	5, 1245
AfiI	CCNNNNNNNGG	5 cut(s)	517, 734, 836, 1108, 1199
AflII	CTTAAG	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	209, 766, 1271
AhdI	GACNNNNNGTC	1 cut(s)	1172
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AluBI	AGCT	6 cut(s)	54, 146, 226, 443, 584, 893
AluI	AGCT	6 cut(s)	54, 146, 226, 443, 584, 893
Alw21I	GWGCWC	1 cut(s)	1232
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	4 cut(s)	312, 526, 629, 642
AoxI	GGCC	2 cut(s)	519, 817
ApeKI	GCWGC	3 cut(s)	143, 481, 549
ApoI	RAATTY	2 cut(s)	928, 1022
AspLEI	GCGC	3 cut(s)	79, 547, 549
AspS9I	GGNCC	2 cut(s)	260, 1174
AsuHPI	GGTGA	6 cut(s)	362, 385, 536, 619, 800, 851
AvaII	GGWCC	2 cut(s)	260, 1174
BamHI	GGATCC	1 cut(s)	634
BauI	CACGAG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	1232
BbvI	GCAGC	3 cut(s)	155, 493, 561
BccI	CCATC	6 cut(s)	103, 160, 220, 341, 779, 1069
BciVI	GTATCC	1 cut(s)	465
BclI	TGATCA	1 cut(s)	868
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	5 cut(s)	288, 512, 581, 587, 807
BfoI	RGCGCY	1 cut(s)	80
BfrI	CTTAAG	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	465
BglII	AGATCT	1 cut(s)	803
BisI	GCNGC	4 cut(s)	144, 482, 550, 741
BlsI	GCNGC	4 cut(s)	145, 483, 551, 742
Bme18I	GGWCC	2 cut(s)	260, 1174
BmeRI	GACNNNNNGTC	1 cut(s)	1172
BmgT120I	GGNCC	2 cut(s)	260, 1174
BmiI	GGNNCC	2 cut(s)	636, 726
BmrI	ACTGGG	2 cut(s)	396, 1063
BmsI	GCATC	6 cut(s)	34, 208, 308, 451, 532, 561
BmuI	ACTGGG	2 cut(s)	396, 1063
BpuEI	CTTGAG	2 cut(s)	234, 553
BsaBI	GATNNNNATC	1 cut(s)	996
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	5 cut(s)	517, 734, 836, 1108, 1199
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	5 cut(s)	391, 522, 636, 1069, 1109
Bse8I	GATNNNNATC	1 cut(s)	996
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	4 cut(s)	148, 380, 547, 973
BseJI	GATNNNNATC	1 cut(s)	996
BseLI	CCNNNNNNNGG	5 cut(s)	517, 734, 836, 1108, 1199
BseMII	CTCAG	5 cut(s)	76, 121, 147, 974, 1028
BseNI	ACTGG	5 cut(s)	391, 522, 636, 1069, 1109
BsePI	GCGCGC	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	155, 493, 561
BsgI	GTGCAG	1 cut(s)	1274
Bsh1236I	CGCG	1 cut(s)	547
BshFI	GGCC	2 cut(s)	521, 819
BsiHKAI	GWGCWC	1 cut(s)	1232
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	5 cut(s)	517, 734, 836, 1108, 1199
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	521, 819
Bsp1286I	GDGCHC	1 cut(s)	1232
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
BspACI	CCGC	3 cut(s)	111, 644, 740
BspANI	GGCC	2 cut(s)	521, 819
BspCNI	CTCAG	5 cut(s)	75, 120, 148, 973, 1029
BspFNI	CGCG	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	636, 726
BspPI	GGATC	4 cut(s)	312, 526, 629, 642
BspTI	CTTAAG	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	740
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	391, 522, 636, 1069, 1109
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	321
BssHII	GCGCGC	1 cut(s)	545
BssMI	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	522
BstAFI	CTTAAG	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	429, 547, 576, 1257
BstDEI	CTNAG	5 cut(s)	62, 107, 156, 960, 1037
BstENI	CCTNNNNNAGG	2 cut(s)	732, 1197
BstF5I	GGATG	4 cut(s)	148, 380, 547, 973
BstFNI	CGCG	1 cut(s)	547
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	3 cut(s)	79, 547, 549
BstKTI	GATC	6 cut(s)	320, 534, 637, 806, 871, 1000
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	203, 431
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	3 cut(s)	155, 493, 561
BstX2I	RGATCY	4 cut(s)	317, 531, 634, 803
BstYI	RGATCY	4 cut(s)	317, 531, 634, 803
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	521, 819
BtsCI	GGATG	4 cut(s)	148, 380, 547, 973
BtsI	GCAGTG	1 cut(s)	1245
BtsIMutI	CAGTG	6 cut(s)	201, 384, 629, 1083, 1102, 1245
Cac8I	GCNNGC	4 cut(s)	429, 547, 576, 1257
CfoI	GCGC	3 cut(s)	79, 547, 549
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	260, 1174
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	2 cut(s)	4, 1244
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviAII	CATG	6 cut(s)	181, 200, 401, 428, 872, 1016
CviQI	GTAC	2 cut(s)	4, 1244
DdeI	CTNAG	5 cut(s)	62, 107, 156, 960, 1037
DpnI	GATC	6 cut(s)	319, 533, 636, 805, 870, 999
DpnII	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
DrdI	GACNNNNNNGTC	2 cut(s)	66, 190
DriI	GACNNNNNGTC	1 cut(s)	1172
DseDI	GACNNNNNNGTC	2 cut(s)	66, 190
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	522
Eam1105I	GACNNNNNGTC	1 cut(s)	1172
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	260, 1174
Eco57I	CTGAAG	4 cut(s)	248, 465, 1163, 1232
EcoNI	CCTNNNNNAGG	2 cut(s)	732, 1197
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	6 cut(s)	184, 203, 404, 431, 875, 1019
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	6 cut(s)	180, 199, 400, 427, 871, 1015
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	4 cut(s)	144, 482, 550, 741
FokI	GGATG	4 cut(s)	135, 367, 554, 980
Fsp4HI	GCNGC	4 cut(s)	144, 482, 550, 741
FspBI	CTAG	5 cut(s)	288, 512, 581, 587, 807
GlaI	GCGC	3 cut(s)	78, 546, 548
GluI	GCNGC	4 cut(s)	144, 482, 550, 741
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	521, 819
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	719
HhaI	GCGC	3 cut(s)	79, 547, 549
Hin1II	CATG	6 cut(s)	184, 203, 404, 431, 875, 1019
Hin6I	GCGC	3 cut(s)	77, 545, 547
HinP1I	GCGC	3 cut(s)	77, 545, 547
HinfI	GANTC	5 cut(s)	60, 326, 562, 671, 842
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	6 cut(s)	362, 385, 536, 619, 800, 851
Hpy188I	TCNGA	8 cut(s)	65, 157, 217, 304, 676, 709, 803, 1227
Hpy188III	TCNNGA	5 cut(s)	251, 315, 458, 587, 962
HpyAV	CCTTC	6 cut(s)	90, 273, 321, 1102, 1203, 1228
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	8 cut(s)	173, 199, 221, 464, 658, 875, 1207, 1255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	5 cut(s)	62, 107, 156, 960, 1037
Hsp92II	CATG	6 cut(s)	184, 203, 404, 431, 875, 1019
HspAI	GCGC	3 cut(s)	77, 545, 547
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
LmnI	GCTCC	2 cut(s)	737, 1030
Lsp1109I	GCAGC	3 cut(s)	155, 493, 561
LweI	GCATC	6 cut(s)	34, 208, 308, 451, 532, 561
MaeI	CTAG	5 cut(s)	288, 512, 581, 587, 807
MaeIII	GTNAC	3 cut(s)	20, 607, 809
MalI	GATC	6 cut(s)	319, 533, 636, 805, 870, 999
MbiI	CCGCTC	1 cut(s)	740
MboI	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
MboII	GAAGA	7 cut(s)	539, 701, 794, 983, 1007, 1056, 1156
MflI	RGATCY	4 cut(s)	317, 531, 634, 803
MhlI	GDGCHC	1 cut(s)	1232
MluCI	AATT	6 cut(s)	268, 417, 852, 928, 1022, 1053
MlyI	GAGTC	3 cut(s)	54, 335, 851
MnlI	CCTC	7 cut(s)	133, 141, 256, 353, 840, 958, 1032
MseI	TTAA	5 cut(s)	56, 420, 834, 926, 1082
MslI	CAYNNNNRTG	1 cut(s)	919
MspA1I	CMGCKG	2 cut(s)	111, 443
MspCI	CTTAAG	1 cut(s)	55
MspI	CCGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	646
MvnI	CGCG	1 cut(s)	547
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
NlaIII	CATG	6 cut(s)	184, 203, 404, 431, 875, 1019
NlaIV	GGNNCC	2 cut(s)	636, 726
NmuCI	GTSAC	3 cut(s)	20, 607, 809
NspI	RCATGY	2 cut(s)	203, 431
PaeI	GCATGC	1 cut(s)	431
PauI	GCGCGC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	2 cut(s)	562, 671
PkrI	GCNGC	4 cut(s)	145, 483, 551, 742
PleI	GAGTC	3 cut(s)	54, 334, 850
PpsI	GAGTC	3 cut(s)	54, 334, 850
PspN4I	GGNNCC	2 cut(s)	636, 726
PspPI	GGNCC	2 cut(s)	260, 1174
PsuI	RGATCY	4 cut(s)	317, 531, 634, 803
PteI	GCGCGC	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	5, 1245
RsaNI	GTAC	2 cut(s)	4, 1244
RseI	CAYNNNNRTG	1 cut(s)	919
SaqAI	TTAA	5 cut(s)	56, 420, 834, 926, 1082
SatI	GCNGC	4 cut(s)	144, 482, 550, 741
Sau3AI	GATC	6 cut(s)	317, 531, 634, 803, 868, 997
Sau96I	GGNCC	2 cut(s)	260, 1174
SchI	GAGTC	3 cut(s)	54, 335, 851
SduI	GDGCHC	1 cut(s)	1232
SfaNI	GCATC	6 cut(s)	34, 208, 308, 451, 532, 561
SinI	GGWCC	2 cut(s)	260, 1174
SmiMI	CAYNNNNRTG	1 cut(s)	919
SmlI	CTYRAG	3 cut(s)	55, 249, 568
SmoI	CTYRAG	3 cut(s)	55, 249, 568
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	6 cut(s)	268, 417, 852, 928, 1022, 1053
SsiI	CCGC	3 cut(s)	111, 644, 740
SspMI	CTAG	5 cut(s)	288, 512, 581, 587, 807
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	70, 1000
TasI	AATT	6 cut(s)	268, 417, 852, 928, 1022, 1053
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	2 cut(s)	562, 671
Tru1I	TTAA	5 cut(s)	56, 420, 834, 926, 1082
Tru9I	TTAA	5 cut(s)	56, 420, 834, 926, 1082
TscAI	CASTG	6 cut(s)	201, 391, 636, 1083, 1109, 1245
TseFI	GTSAC	3 cut(s)	20, 607, 809
TseI	GCWGC	3 cut(s)	143, 481, 549
Tsp45I	GTSAC	3 cut(s)	20, 607, 809
TspDTI	ATGAA	9 cut(s)	261, 684, 795, 921, 953, 984, 1008, 1185, 1232
TspGWI	ACGGA	2 cut(s)	270, 627
TspRI	CASTG	6 cut(s)	201, 391, 636, 1083, 1109, 1245
Vha464I	CTTAAG	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	260, 1174
XagI	CCTNNNNNAGG	2 cut(s)	732, 1197
XapI	RAATTY	2 cut(s)	928, 1022
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	2 cut(s)	203, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XspI	CTAG	5 cut(s)	288, 512, 581, 587, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.