RLG00000007464

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003966
Physical Location & Seq
Reverse (-)
17122370 .. 17123554
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007464

Sequence Viewer

Length: 786 bp
ATGAATCCTAAGGAATATTCCAAGAAACCCGTTGTTTCAGTTGGGCCGTTTGGATTATCGAAGGAGCGAGGAAAACCCTTTGATGATGGAATACACTCAGCAGTGAAAGGTTTGGTGATATTTCATGTTCCAGGGTTCACAATTGCGTCCGTCCAGTTTGAATATGACGACGGCGGATGCTCAACTTGGTCAGACAACCATGGGCTCATCACAGACACCAAAGACGTCCGCTTCAAAGGACCAAGCATTAAGTTCAATTATCCAGACGAATTTTTGACTTCAGTTCTTGGGTGTTGTCAAGAAGACGAGACCGGGTCCTTTGTCACCACGCTTGCTTTTAAGACCAACAAAAAAGATTATGGACCCTTTGGGTCGACTCAATGCAACCCGAAAGACTGTTTTACAATTCATCACGTGCCTGGAAGTAAGATAGTTGGTTTCCATGGCAGATCAAACAACAACTGCTTCGCTGGTGGTATTGCTTCAATTGGAGCATACCTACTAAAGCCTCATGATCAACAAATTGAATGTCCTCCGTCAACACGGAAACAAGCTGGATATCCTTCCCAACCCAAGTTCAAGAAAGATGACAGAACCCAGTACCAGGATCATTATGCAATTAACGATAATGTAATTAGCGAAAACAAGGGAAAGGGCAACGGAACTTTCCATTTTGACGACACATCTCAAAACCCGAAGGAATGCTCAATTTCAAATCATCAAGTTACGGGAAACGAGGGAGACGGCAACGGAGCTATCTATTTCGGCCGCGGCCCGCGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

262

Amino Acids

28.59

Weight (kDa)

7.12

Isoelectric Point (pI)

21.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 14 - 154 2.1e-25 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
AccI GTMKAC 1 cut(s) 374
AccII CGCG 2 cut(s) 771, 778
AciI CCGC 6 cut(s) 174, 229, 769, 771, 776, 778
AclWI GGATC 1 cut(s) 615
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 264
AcvI CACGTG 1 cut(s) 415
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 604
AgsI TTSAA 7 cut(s) 161, 235, 256, 486, 527, 580, 714
AjnI CCWGG 3 cut(s) 130, 418, 603
AluBI AGCT 2 cut(s) 554, 755
AluI AGCT 2 cut(s) 554, 755
Alw26I GTCTC 2 cut(s) 302, 735
AlwI GGATC 1 cut(s) 615
AoxI GGCC 3 cut(s) 44, 766, 772
ApoI RAATTY 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 514, 546
AspS9I GGNCC 5 cut(s) 44, 239, 315, 362, 773
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 127, 316
AvaII GGWCC 3 cut(s) 239, 315, 362
AxyI CCTNAGG 1 cut(s) 9
BanII GRGCYC 1 cut(s) 207
BbrPI CACGTG 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 309
BccI CCATC 1 cut(s) 80
BceAI ACGGC 3 cut(s) 31, 187, 760
BciT130I CCWGG 3 cut(s) 132, 420, 605
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 302, 735
BisI GCNGC 2 cut(s) 769, 772
BlsI GCNGC 2 cut(s) 770, 773
Bme1390I CCNGG 4 cut(s) 132, 313, 420, 605
Bme18I GGWCC 3 cut(s) 239, 315, 362
BmgT120I GGNCC 5 cut(s) 44, 239, 315, 362, 773
BmiI GGNNCC 2 cut(s) 316, 364
BmrFI CCNGG 4 cut(s) 132, 313, 420, 605
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 313
BsaAI YACGTR 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 131, 199, 442, 769, 776
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse1I ACTGG 2 cut(s) 154, 598
Bse21I CCTNAGG 1 cut(s) 9
BseBI CCWGG 3 cut(s) 132, 420, 605
BseDI CCNNGG 5 cut(s) 131, 199, 442, 769, 776
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 154, 598
BseX3I CGGCCG 1 cut(s) 766
Bsh1236I CGCG 2 cut(s) 771, 778
Bsh1285I CGRYCG 1 cut(s) 769
BshFI GGCC 3 cut(s) 46, 768, 774
BsiEI CGRYCG 1 cut(s) 769
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 604
BsmAI GTCTC 2 cut(s) 302, 735
BsmBI CGTCTC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 3 cut(s) 46, 768, 774
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 449, 514, 607
Bsp19I CCATGG 2 cut(s) 199, 442
BspACI CCGC 6 cut(s) 174, 229, 769, 771, 776, 778
BspANI GGCC 3 cut(s) 46, 768, 774
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 2 cut(s) 771, 778
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 316, 364
BspPI GGATC 1 cut(s) 615
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 154, 598
BssECI CCNNGG 5 cut(s) 131, 199, 442, 769, 776
BssMI GATC 3 cut(s) 449, 514, 607
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 199, 442
Bst2UI CCWGG 3 cut(s) 132, 420, 605
Bst4CI ACNGT 1 cut(s) 398
BstACI GRCGYC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 3 cut(s) 333, 776, 780
BstDEI CTNAG 2 cut(s) 9, 97
BstDSI CCRYGG 4 cut(s) 199, 442, 769, 776
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 2 cut(s) 771, 778
BstKTI GATC 3 cut(s) 452, 517, 610
BstMAI GTCTC 2 cut(s) 302, 735
BstMBI GATC 3 cut(s) 449, 514, 607
BstMCI CGRYCG 1 cut(s) 769
BstNI CCWGG 3 cut(s) 132, 420, 605
BstSCI CCNGG 4 cut(s) 130, 311, 418, 603
BstUI CGCG 2 cut(s) 771, 778
BstV2I GAAGAC 1 cut(s) 309
BstZI CGGCCG 1 cut(s) 766
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 3 cut(s) 46, 768, 774
BtgI CCRYGG 4 cut(s) 199, 442, 769, 776
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 333, 776, 780
CciI TCATGA 1 cut(s) 511
Cfr13I GGNCC 5 cut(s) 44, 239, 315, 362, 773
Cfr42I CCGCGG 2 cut(s) 772, 779
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 601
CviAII CATG 4 cut(s) 125, 200, 443, 512
CviJI RGCY 7 cut(s) 46, 205, 508, 554, 755, 768, 774
CviKI_1 RGCY 7 cut(s) 46, 205, 508, 554, 755, 768, 774
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 2 cut(s) 9, 97
DpnI GATC 3 cut(s) 451, 516, 609
DpnII GATC 3 cut(s) 449, 514, 607
EaeI YGGCCR 1 cut(s) 766
EagI CGGCCG 1 cut(s) 766
EciI GGCGGA 1 cut(s) 189
EclXI CGGCCG 1 cut(s) 766
Eco130I CCWWGG 2 cut(s) 199, 442
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 560
Eco47I GGWCC 3 cut(s) 239, 315, 362
Eco52I CGGCCG 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 415
Eco81I CCTNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 3 cut(s) 130, 418, 603
EcoRV GATATC 1 cut(s) 560
EcoT14I CCWWGG 2 cut(s) 199, 442
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 199, 442
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 4 cut(s) 128, 203, 446, 515
FaiI YATR 9 cut(s) 126, 165, 201, 360, 444, 496, 513, 615, 784
FatI CATG 4 cut(s) 124, 199, 442, 511
FauI CCCGC 2 cut(s) 771, 783
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 2 cut(s) 769, 772
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 769, 772
GluI GCNGC 2 cut(s) 769, 772
HaeIII GGCC 3 cut(s) 46, 768, 774
HapII CCGG 1 cut(s) 312
HgaI GACGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 4 cut(s) 128, 203, 446, 515
HincII GTYRAC 2 cut(s) 375, 540
HindII GTYRAC 2 cut(s) 375, 540
HinfI GANTC 2 cut(s) 4, 376
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 127, 316
Hpy166II GTNNAC 3 cut(s) 138, 375, 540
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 4 cut(s) 263, 299, 512, 580
Hpy8I GTNNAC 3 cut(s) 138, 375, 540
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 55, 573, 691
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 2 cut(s) 225, 414
HpyCH4V TGCA 2 cut(s) 384, 617
HpyF3I CTNAG 2 cut(s) 9, 97
HpySE526I ACGT 2 cut(s) 225, 414
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 4 cut(s) 128, 203, 446, 515
Ksp22I TGATCA 1 cut(s) 514
KspI CCGCGG 2 cut(s) 772, 779
Kzo9I GATC 3 cut(s) 449, 514, 607
LmnI GCTCC 3 cut(s) 64, 491, 752
LweI GCATC 1 cut(s) 167
MaeII ACGT 2 cut(s) 225, 414
MaeIII GTNAC 2 cut(s) 322, 724
MalI GATC 3 cut(s) 451, 516, 609
MboI GATC 3 cut(s) 449, 514, 607
MboII GAAGA 1 cut(s) 314
MfeI CAATTG 2 cut(s) 141, 486
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 9 cut(s) 141, 256, 269, 405, 486, 522, 618, 633, 708
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 4 cut(s) 62, 519, 543, 730
MseI TTAA 3 cut(s) 249, 339, 621
MspA1I CMGCKG 2 cut(s) 771, 778
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 4 cut(s) 132, 313, 420, 605
MunI CAATTG 2 cut(s) 141, 486
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 3 cut(s) 132, 420, 605
MvnI CGCG 2 cut(s) 771, 778
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 2 cut(s) 199, 442
NdeII GATC 3 cut(s) 449, 514, 607
NlaIII CATG 4 cut(s) 128, 203, 446, 515
NlaIV GGNNCC 2 cut(s) 316, 364
NmuCI GTSAC 1 cut(s) 322
PagI TCATGA 1 cut(s) 511
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 2 cut(s) 770, 773
PleI GAGTC 1 cut(s) 370
PmaCI CACGTG 1 cut(s) 415
PmlI CACGTG 1 cut(s) 415
PpsI GAGTC 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 415
PpuMI RGGWCCY 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 3 cut(s) 130, 418, 603
PspCI CACGTG 1 cut(s) 415
PspGI CCWGG 3 cut(s) 130, 418, 603
PspN4I GGNNCC 2 cut(s) 316, 364
PspPI GGNCC 5 cut(s) 44, 239, 315, 362, 773
PspPPI RGGWCCY 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 313
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SacII CCGCGG 2 cut(s) 772, 779
SalI GTCGAC 1 cut(s) 373
SaqAI TTAA 3 cut(s) 249, 339, 621
SatI GCNGC 2 cut(s) 769, 772
Sau3AI GATC 3 cut(s) 449, 514, 607
Sau96I GGNCC 5 cut(s) 44, 239, 315, 362, 773
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 4 cut(s) 132, 313, 420, 605
SduI GDGCHC 1 cut(s) 207
SetI ASST 6 cut(s) 112, 228, 417, 501, 556, 757
SfaNI GCATC 1 cut(s) 167
Sfr303I CCGCGG 2 cut(s) 772, 779
SgrBI CCGCGG 2 cut(s) 772, 779
SinI GGWCC 3 cut(s) 239, 315, 362
Sse9I AATT 9 cut(s) 141, 256, 269, 405, 486, 522, 618, 633, 708
SsiI CCGC 6 cut(s) 174, 229, 769, 771, 776, 778
SspI AATATT 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 130, 311, 418, 603
StyI CCWWGG 2 cut(s) 199, 442
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 2 cut(s) 228, 417
TaqI TCGA 2 cut(s) 59, 374
TasI AATT 9 cut(s) 141, 256, 269, 405, 486, 522, 618, 633, 708
TauI GCSGC 2 cut(s) 771, 774
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 249, 339, 621
Tru9I TTAA 3 cut(s) 249, 339, 621
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 17, 113, 398
TspGWI ACGGA 5 cut(s) 139, 525, 559, 675, 765
TspRI CASTG 1 cut(s) 108
Tth111I GACNNNGTC 1 cut(s) 313
VpaK11BI GGWCC 3 cut(s) 239, 315, 362
XapI RAATTY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 374
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.