RLG00000022127

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003966
Physical Location & Seq
Reverse (-)
81166500 .. 81172655
6156 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022127

Sequence Viewer

Length: 1452 bp
ATGACGCCGACGGAACCTCAGTTTGGTCAGAATGGTGAAGGAAAGATCGCTTTGGATATCTTGTCAAGGCTCGTGAAGTACGTTCATGGACAAAGCAGTCAGAAAAGAAAGTGTGGTACGTACTTGGTCCACACACTCAATTTGATTTCTGGCGGGAAGAAGATCTCAGCCACCTCGAACTACTTCGACAGTCTGCCCTATAAGCGTGATGAAGAGGACATGGTGGATCTTGGTAGAAAACTAGAAATTGCCCGGTTGAGTTCAAGGAGTACTATGTCCAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGGATAAAGAAGGAAATTGGAGCATTGCAATTAGAAGTATGTCAGGAGCTTCAGAATTACATCTGAATGATGTTGTATTGCCAGAGCTACCGACAGAGTACATGGTAGATATGAAATATAAGGGTCGTGTTAAGGTTGTCAAAAAAATGCTACAAGTTGTTGATGGGGTTAAAAGTGTAGAGGCGGACCTCAACACCCAAGTCGTTAGGATTCAAGCCAAACATGGCAAGACGTTTTGGAGCTCAATCTCATCAGTCGCCCTCTGTTCTTCTTTTGTCGCTATTAACTACCTCCAACGTACAATGAATCCTGAGGAATCCAAGAAAACCGCCGTTTCAGTCGGACCGTTTGGATCATCGACGGAGCGAGGAATACCCTTTAATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGATAGAATATTTGGAAGGGCGCATAATTAGCAACGTCCGGTTTGAATATGACGACGACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTAAAGATCGCTTTGGATCTCTTGTCAGGGTTCTTCGATGTGCTCTCCGACGACAACAAAGTCAGAAGAGAAAGAATTAGATTCAATTATCCAGACGAATTTTTGACTGCAGTTCATGGACGGTATAGTGAAAACTTGTTCGGGAAGGGTGCCGTCGACTCACTCACTTTTAAGACCAATAGAAATACTTACGGACCCTTTGGTTGGACGTCGACTCAAAATGAAAAACTGATCAAAGTCTCTTGTTTCTCAGTTCATATGCCTGGAAGTAAGATTGTTGGCTTTCATGGCAGATCAGGGAGTAAGTGGTCGGGTGGTGTTTATTCAATAGGAGCCTACGTAAAGCCTTATCATCAACAAATTGAACCTCCGTCAAAAGCTCTGATGCTTTATCCATCAGAATCTCCACGTCTACCTGAATTTCATTCTCAAACCAGGCTCAATAAAGATGACAGACCTCAAAACCATAAACATTATGCAGTTTCAAATATTCAAGTTAGCAGAAATGAGGGAGATCACAACGGAGCTTTCCATTTGGGCGACATATATGCAAACTGTTATATCGAAAAAGCATTCATAGAGCACAACCAATTTCAACCAAACAAGAGTCGTCAATCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

484

Amino Acids

54.41

Weight (kDa)

9.24

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 221 - 389 1.1e-22 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 96, 887
AatII GACGTC 1 cut(s) 1040
AccB1I GGYRCC 1 cut(s) 977
AccI GTMKAC 3 cut(s) 984, 1040, 1240
AciI CCGC 3 cut(s) 153, 506, 651
AclWI GGATC 3 cut(s) 234, 682, 852
AcsI RAATTY 2 cut(s) 926, 1247
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 2 cut(s) 5, 1037
AfaI GTAC 6 cut(s) 80, 118, 122, 271, 422, 622
AfiI CCNNNNNNNGG 3 cut(s) 23, 322, 1032
AgsI TTSAA 9 cut(s) 264, 536, 782, 913, 1155, 1193, 1314, 1322, 1424
AjiI CACGTC 1 cut(s) 1238
AjnI CCWGG 2 cut(s) 1090, 1262
AjuI GAANNNNNNNTTGG 5 cut(s) 38, 296, 328, 790, 822
AluBI AGCT 6 cut(s) 289, 371, 409, 564, 1208, 1355
AluI AGCT 6 cut(s) 289, 371, 409, 564, 1208, 1355
Alw21I GWGCWC 3 cut(s) 566, 873, 1413
Alw26I GTCTC 1 cut(s) 1072
AlwI GGATC 3 cut(s) 234, 682, 852
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 2 cut(s) 926, 1247
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 759
AspS9I GGNCC 4 cut(s) 127, 508, 665, 1022
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 47, 836
AvaII GGWCC 4 cut(s) 127, 508, 665, 1022
AxyI CCTNAGG 1 cut(s) 633
BanI GGYRCC 1 cut(s) 977
BanII GRGCYC 1 cut(s) 566
BauI CACGAG 1 cut(s) 71
Bbv12I GWGCWC 3 cut(s) 566, 873, 1413
BbvI GCAGC 1 cut(s) 276
BccI CCATC 3 cut(s) 479, 701, 1231
BceAI ACGGC 2 cut(s) 638, 965
BcgI CGANNNNNNTGC 2 cut(s) 1358, 1392
BciT130I CCWGG 2 cut(s) 1092, 1264
BclI TGATCA 1 cut(s) 1059
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 1072
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 936
BglII AGATCT 1 cut(s) 162
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 3 cut(s) 253, 1092, 1264
Bme18I GGWCC 4 cut(s) 127, 508, 665, 1022
BmgBI CACGTC 1 cut(s) 1238
BmgT120I GGNCC 4 cut(s) 127, 508, 665, 1022
BmiI GGNNCC 4 cut(s) 15, 979, 1024, 1162
BmrFI CCNGG 3 cut(s) 253, 1092, 1264
BmsI GCATC 1 cut(s) 1203
BpuMI CCSGG 1 cut(s) 253
BsaAI YACGTR 2 cut(s) 120, 1168
BsaHI GRCGYC 2 cut(s) 5, 1037
BsaWI WCCGGW 1 cut(s) 774
BsaXI ACNNNNNCTCC 2 cut(s) 1152, 1182
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 322, 1032
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 1092, 1264
BseLI CCNNNNNNNGG 3 cut(s) 23, 322, 1032
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 6 cut(s) 32, 180, 624, 732, 816, 1092
BseXI GCAGC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 977
BsiHKAI GWGCWC 3 cut(s) 566, 873, 1413
BsiSI CCGG 2 cut(s) 253, 775
BslI CCNNNNNNNGG 3 cut(s) 23, 322, 1032
BsmAI GTCTC 1 cut(s) 1072
BsmI GAATGC 1 cut(s) 1400
Bsp1286I GDGCHC 3 cut(s) 566, 873, 1413
Bsp143I GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
BspACI CCGC 3 cut(s) 153, 506, 651
BspCNI CTCAG 6 cut(s) 31, 179, 625, 731, 815, 1091
BspLI GGNNCC 4 cut(s) 15, 979, 1024, 1162
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 3 cut(s) 234, 682, 852
BspT107I GGYRCC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 345
BssMI GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
BssNI GRCGYC 2 cut(s) 5, 1037
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 1092, 1264
Bst4CI ACNGT 4 cut(s) 191, 669, 951, 1385
Bst6I CTCTTC 3 cut(s) 207, 317, 889
BstACI GRCGYC 2 cut(s) 5, 1037
BstBAI YACGTR 2 cut(s) 120, 1168
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 6 cut(s) 18, 166, 633, 718, 802, 1078
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 9 cut(s) 48, 165, 229, 677, 837, 847, 1062, 1124, 1345
BstMAI GTCTC 1 cut(s) 1072
BstMBI GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
BstMWI GCNNNNNNNGC 3 cut(s) 202, 765, 1116
BstNI CCWGG 2 cut(s) 1092, 1264
BstSCI CCNGG 3 cut(s) 251, 1090, 1262
BstSFI CTRYAG 1 cut(s) 936
BstSNI TACGTA 2 cut(s) 120, 1168
BstV1I GCAGC 1 cut(s) 276
BstX2I RGATCY 3 cut(s) 162, 226, 844
BstYI RGATCY 3 cut(s) 162, 226, 844
Bsu36I CCTNAGG 1 cut(s) 633
BtrI CACGTC 1 cut(s) 1238
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 759
Cfr13I GGNCC 4 cut(s) 127, 508, 665, 1022
CpoI CGGWCCG 1 cut(s) 665
CseI GACGC 1 cut(s) 13
Csp6I GTAC 6 cut(s) 79, 117, 121, 270, 421, 621
CspI CGGWCCG 1 cut(s) 665
CviAII CATG 7 cut(s) 86, 220, 424, 545, 821, 944, 1115
CviQI GTAC 6 cut(s) 79, 117, 121, 270, 421, 621
DdeI CTNAG 6 cut(s) 18, 166, 633, 718, 802, 1078
DpnI GATC 9 cut(s) 47, 164, 228, 676, 836, 846, 1061, 1123, 1344
DpnII GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
DrdI GACNNNNNNGTC 2 cut(s) 96, 887
DseDI GACNNNNNNGTC 2 cut(s) 96, 887
Eam1104I CTCTTC 3 cut(s) 207, 317, 889
EarI CTCTTC 3 cut(s) 207, 317, 889
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 564
Eco105I TACGTA 2 cut(s) 120, 1168
Eco24I GRGCYC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 4 cut(s) 127, 508, 665, 1022
Eco53kI GAGCTC 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 357
Eco81I CCTNAGG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 1090, 1262
EcoRV GATATC 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 566
FaeI CATG 7 cut(s) 89, 223, 427, 548, 824, 947, 1118
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 7 cut(s) 85, 219, 423, 544, 820, 943, 1114
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 1086
FbaI TGATCA 1 cut(s) 1059
FblI GTMKAC 3 cut(s) 984, 1040, 1240
Fnu4HI GCNGC 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 758
GluI GCNGC 1 cut(s) 290
HapII CCGG 2 cut(s) 253, 775
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 759
Hin1I GRCGYC 2 cut(s) 5, 1037
Hin1II CATG 7 cut(s) 89, 223, 427, 548, 824, 947, 1118
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HincII GTYRAC 2 cut(s) 985, 1041
HindII GTYRAC 2 cut(s) 985, 1041
HinfI GANTC 9 cut(s) 532, 628, 638, 798, 909, 986, 1042, 1229, 1435
HpaII CCGG 2 cut(s) 253, 775
HphI GGTGA 2 cut(s) 47, 836
Hpy166II GTNNAC 4 cut(s) 130, 985, 1041, 1241
Hpy188III TCNNGA 5 cut(s) 73, 366, 632, 920, 970
Hpy8I GTNNAC 4 cut(s) 130, 985, 1041, 1241
Hpy99I CGWCG 7 cut(s) 13, 685, 794, 797, 881, 986, 1042
HpyAV CCTTC 5 cut(s) 32, 326, 326, 746, 967
HpyCH4III ACNGT 4 cut(s) 191, 669, 951, 1385
HpyCH4IV ACGT 8 cut(s) 81, 119, 554, 619, 771, 1037, 1167, 1237
HpyCH4V TGCA 5 cut(s) 285, 350, 938, 1307, 1379
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 765, 1116
HpyF3I CTNAG 6 cut(s) 18, 166, 633, 718, 802, 1078
HpySE526I ACGT 8 cut(s) 81, 119, 554, 619, 771, 1037, 1167, 1237
Hsp92I GRCGYC 2 cut(s) 5, 1037
Hsp92II CATG 7 cut(s) 89, 223, 427, 548, 824, 947, 1118
HspAI GCGC 1 cut(s) 757
Ksp22I TGATCA 1 cut(s) 1059
Kzo9I GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
LmnI GCTCC 6 cut(s) 342, 368, 561, 685, 1160, 1352
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 1 cut(s) 1203
MaeI CTAG 1 cut(s) 242
MaeII ACGT 8 cut(s) 81, 119, 554, 619, 771, 1037, 1167, 1237
MalI GATC 9 cut(s) 47, 164, 228, 676, 836, 846, 1061, 1123, 1344
MboI GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
MboII GAAGA 7 cut(s) 169, 172, 224, 304, 582, 853, 906
MflI RGATCY 3 cut(s) 162, 226, 844
MhlI GDGCHC 3 cut(s) 566, 873, 1413
MlyI GAGTC 3 cut(s) 980, 1036, 1444
MmeI TCCRAC 4 cut(s) 640, 643, 900, 1013
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 5 cut(s) 453, 492, 606, 702, 999
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 2 cut(s) 253, 775
MspR9I CCNGG 3 cut(s) 253, 1092, 1264
Mva1269I GAATGC 1 cut(s) 1400
MvaI CCWGG 2 cut(s) 1092, 1264
MwoI GCNNNNNNNGC 3 cut(s) 202, 765, 1116
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 1086
NdeII GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
NlaIII CATG 7 cut(s) 89, 223, 427, 548, 824, 947, 1118
NlaIV GGNNCC 4 cut(s) 15, 979, 1024, 1162
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 1400
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 6 cut(s) 532, 628, 638, 798, 909, 1229
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 3 cut(s) 980, 1036, 1443
PpsI GAGTC 3 cut(s) 980, 1036, 1443
Ppu21I YACGTR 2 cut(s) 120, 1168
Psp124BI GAGCTC 1 cut(s) 566
Psp6I CCWGG 2 cut(s) 1090, 1262
PspGI CCWGG 2 cut(s) 1090, 1262
PspN4I GGNNCC 4 cut(s) 15, 979, 1024, 1162
PspPI GGNCC 4 cut(s) 127, 508, 665, 1022
PstI CTGCAG 1 cut(s) 940
PsuI RGATCY 3 cut(s) 162, 226, 844
RsaI GTAC 6 cut(s) 80, 118, 122, 271, 422, 622
RsaNI GTAC 6 cut(s) 79, 117, 121, 270, 421, 621
RseI CAYNNNNRTG 1 cut(s) 387
Rsr2I CGGWCCG 1 cut(s) 665
RsrII CGGWCCG 1 cut(s) 665
SacI GAGCTC 1 cut(s) 566
SalI GTCGAC 2 cut(s) 983, 1039
SaqAI TTAA 5 cut(s) 453, 492, 606, 702, 999
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 9 cut(s) 45, 162, 226, 674, 834, 844, 1059, 1121, 1342
Sau96I GGNCC 4 cut(s) 127, 508, 665, 1022
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 3 cut(s) 980, 1036, 1444
ScrFI CCNGG 3 cut(s) 253, 1092, 1264
SduI GDGCHC 3 cut(s) 566, 873, 1413
SfaNI GCATC 1 cut(s) 1203
SfcI CTRYAG 1 cut(s) 936
SinI GGWCC 4 cut(s) 127, 508, 665, 1022
SmiMI CAYNNNNRTG 1 cut(s) 387
SnaBI TACGTA 2 cut(s) 120, 1168
SsiI CCGC 3 cut(s) 153, 506, 651
SspI AATATT 2 cut(s) 746, 1318
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 566
StyD4I CCNGG 3 cut(s) 251, 1090, 1262
TaaI ACNGT 4 cut(s) 191, 669, 951, 1385
TaiI ACGT 8 cut(s) 84, 122, 557, 622, 774, 1040, 1170, 1240
TaqI TCGA 7 cut(s) 176, 186, 680, 864, 984, 1040, 1392
TatI WGTACW 2 cut(s) 269, 420
TfiI GAWTC 6 cut(s) 532, 628, 638, 798, 909, 1229
Tru1I TTAA 5 cut(s) 453, 492, 606, 702, 999
Tru9I TTAA 5 cut(s) 453, 492, 606, 702, 999
TscAI CASTG 1 cut(s) 729
TseI GCWGC 1 cut(s) 289
TspGWI ACGGA 6 cut(s) 26, 698, 810, 1035, 1188, 1365
TspRI CASTG 1 cut(s) 729
VpaK11BI GGWCC 4 cut(s) 127, 508, 665, 1022
XapI RAATTY 2 cut(s) 926, 1247
XmiI GTMKAC 3 cut(s) 984, 1040, 1240
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 242
ZraI GACGTC 1 cut(s) 1038
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.