Rh2AG637700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003966
Physical Location & Seq
Reverse (-)
86194358 .. 86195571
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG637700.1

Sequence Viewer

Length: 840 bp
ATGAATCCTGAGGAATCCAAGAAAACCGTCGTTTCAGTCGGACCGTTTGGATCACTACCGACGTCGCGCGGAACACCCTTTGATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGATAGAATATTTGGAAGGGCACACAATTGTTAACGTCCGGTTTGAATATGACGACGACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTAAAGATCCCTTTGGATCTCTTGTCAGGGCTCTCCGAAGTGCTCTCCGACACCAAAGTCAGAAGAGAAACAGTAAACAAAGTCAGAAGAGAAACAATTAGATTCAATTATCCGGACGAATTTTTAACTGCAGTTCATGGACGGTATTGTGACAACTTGTTGGGTGCCGTGCGCGTCGTCAACTCACTTACTTTTAAGACCAATAGAAATACTTACGGACCCTTTGGTTGGACGTCTCAAAATGAAAAACTGATCTACGTAGTCCCTTGTTTCTCAATTCATATGCCTGGAAGTGAGATTGTTGGCTTTCATGGCAGATCAAGCCGGAATAAGTGGTTGGGTGGTATTTATTCAATAGGAGCCTATGTAAAGCCTTATCATCAACAAATTGAATACCCTCCGTCAAAAGCTCTGATGCTTTATCCATCAGAACCTCCACGTCTACCTGAATTTCATTCTCAAACCAAGCTCAATAAAGATGACAGACCTCAAAACCATAAACATTATACAGTTTCAAATATTCAAGTTAGCAGAAATGAGGGAGATCACAACGGAGCTTTCCATTTGGGCGACATATATGCAAACTGTTATATAACCAAACAAGAGTCCTCAATCGGTTACGCCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

279

Amino Acids

31.53

Weight (kDa)

7.77

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 14 - 191 5.4e-22 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AatII GACGTC 2 cut(s) 65, 443
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 649
AccII CGCG 3 cut(s) 67, 69, 381
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 1 cut(s) 69
AclWI GGATC 3 cut(s) 58, 208, 231
AcsI RAATTY 2 cut(s) 326, 656
AcyI GRCGYC 2 cut(s) 62, 440
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 6 cut(s) 161, 313, 561, 599, 723, 731
AjiI CACGTC 1 cut(s) 647
AjnI CCWGG 1 cut(s) 493
AjuI GAANNNNNNNTTGG 4 cut(s) 169, 201, 527, 559
AluBI AGCT 3 cut(s) 617, 676, 764
AluI AGCT 3 cut(s) 617, 676, 764
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 3 cut(s) 58, 208, 231
Aor13HI TCCGGA 1 cut(s) 319
ApoI RAATTY 2 cut(s) 326, 656
AspLEI GCGC 2 cut(s) 69, 381
AspS9I GGNCC 2 cut(s) 41, 425
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 2 cut(s) 41, 425
AxyI CCTNAGG 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 2 cut(s) 80, 640
BceAI ACGGC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 447
BfmI CTRYAG 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 2 cut(s) 41, 425
BmgBI CACGTC 1 cut(s) 647
BmgT120I GGNCC 2 cut(s) 41, 425
BmiI GGNNCC 3 cut(s) 373, 427, 568
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 612
BsaAI YACGTR 1 cut(s) 466
BsaHI GRCGYC 2 cut(s) 62, 440
BsaWI WCCGGW 2 cut(s) 153, 319
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse21I CCTNAGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 111, 195
BseSI GKGCMC 1 cut(s) 138
Bsh1236I CGCG 3 cut(s) 67, 69, 381
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 154, 320, 532
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 447
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 138, 240, 252
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 6 cut(s) 50, 213, 223, 459, 524, 751
BspACI CCGC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 110, 194
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 3 cut(s) 67, 69, 381
BspLI GGNNCC 3 cut(s) 373, 427, 568
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 3 cut(s) 58, 208, 231
BspT107I GGYRCC 1 cut(s) 371
BssMI GATC 6 cut(s) 50, 213, 223, 459, 524, 751
BssNI GRCGYC 2 cut(s) 62, 440
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 6 cut(s) 28, 45, 280, 351, 718, 794
Bst6I CTCTTC 2 cut(s) 265, 289
BstACI GRCGYC 2 cut(s) 62, 440
BstBAI YACGTR 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 9, 97, 181
BstFNI CGCG 3 cut(s) 67, 69, 381
BstHHI GCGC 2 cut(s) 69, 381
BstKTI GATC 6 cut(s) 53, 216, 226, 462, 527, 754
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 6 cut(s) 50, 213, 223, 459, 524, 751
BstMWI GCNNNNNNNGC 2 cut(s) 519, 528
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 138
BstSNI TACGTA 1 cut(s) 466
BstUI CGCG 3 cut(s) 67, 69, 381
BstX2I RGATCY 2 cut(s) 213, 223
BstYI RGATCY 2 cut(s) 213, 223
Bsu36I CCTNAGG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 647
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
CfoI GCGC 2 cut(s) 69, 381
Cfr13I GGNCC 2 cut(s) 41, 425
CpoI CGGWCCG 1 cut(s) 41
CseI GACGC 1 cut(s) 370
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 3 cut(s) 200, 344, 518
CviJI RGCY 8 cut(s) 238, 513, 531, 569, 580, 617, 676, 764
CviKI_1 RGCY 8 cut(s) 238, 513, 531, 569, 580, 617, 676, 764
DdeI CTNAG 3 cut(s) 9, 97, 181
DpnI GATC 6 cut(s) 52, 215, 225, 461, 526, 753
DpnII GATC 6 cut(s) 50, 213, 223, 459, 524, 751
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 2 cut(s) 265, 289
EarI CTCTTC 2 cut(s) 265, 289
Eco105I TACGTA 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 41, 425
Eco81I CCTNAGG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 3 cut(s) 203, 347, 521
FaqI GGGAC 1 cut(s) 455
FatI CATG 3 cut(s) 199, 343, 517
FauNDI CATATG 1 cut(s) 489
FblI GTMKAC 1 cut(s) 649
FriOI GRGCYC 1 cut(s) 240
GlaI GCGC 2 cut(s) 68, 380
HapII CCGG 3 cut(s) 154, 320, 532
HgaI GACGC 1 cut(s) 370
HhaI GCGC 2 cut(s) 69, 381
Hin1I GRCGYC 2 cut(s) 62, 440
Hin1II CATG 3 cut(s) 203, 347, 521
Hin6I GCGC 2 cut(s) 67, 379
HinP1I GCGC 2 cut(s) 67, 379
HincII GTYRAC 2 cut(s) 148, 388
HindII GTYRAC 2 cut(s) 148, 388
HinfI GANTC 5 cut(s) 4, 14, 177, 309, 812
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 3 cut(s) 154, 320, 532
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 4 cut(s) 148, 283, 388, 650
Hpy188I TCNGA 8 cut(s) 41, 193, 244, 256, 269, 293, 621, 637
Hpy188III TCNNGA 2 cut(s) 8, 320
Hpy8I GTNNAC 4 cut(s) 148, 283, 388, 650
Hpy99I CGWCG 6 cut(s) 32, 64, 67, 173, 176, 386
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 6 cut(s) 28, 45, 280, 351, 718, 794
HpyCH4IV ACGT 5 cut(s) 62, 150, 440, 465, 646
HpyCH4V TGCA 2 cut(s) 338, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 519, 528
HpyF3I CTNAG 3 cut(s) 9, 97, 181
HpySE526I ACGT 5 cut(s) 62, 150, 440, 465, 646
Hsp92I GRCGYC 2 cut(s) 62, 440
Hsp92II CATG 3 cut(s) 203, 347, 521
HspAI GCGC 2 cut(s) 67, 379
Kpn2I TCCGGA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 6 cut(s) 50, 213, 223, 459, 524, 751
LmnI GCTCC 2 cut(s) 566, 761
LpnPI CCDG 8 cut(s) 21, 167, 219, 333, 480, 507, 545, 666
LweI GCATC 1 cut(s) 612
MaeII ACGT 5 cut(s) 62, 150, 440, 465, 646
MaeIII GTNAC 2 cut(s) 356, 824
MalI GATC 6 cut(s) 52, 215, 225, 461, 526, 753
MboI GATC 6 cut(s) 50, 213, 223, 459, 524, 751
MboII GAAGA 2 cut(s) 282, 306
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 2 cut(s) 213, 223
MhlI GDGCHC 3 cut(s) 138, 240, 252
MluCI AATT 7 cut(s) 141, 303, 313, 326, 483, 594, 656
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 3 cut(s) 19, 279, 416
MnlI CCTC 6 cut(s) 4, 615, 651, 705, 739, 826
MroI TCCGGA 1 cut(s) 319
MseI TTAA 3 cut(s) 147, 332, 402
MspI CCGG 3 cut(s) 154, 320, 532
MspR9I CCNGG 1 cut(s) 495
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 3 cut(s) 67, 69, 381
MwoI GCNNNNNNNGC 2 cut(s) 519, 528
NdeI CATATG 1 cut(s) 489
NdeII GATC 6 cut(s) 50, 213, 223, 459, 524, 751
NlaIII CATG 3 cut(s) 203, 347, 521
NlaIV GGNNCC 3 cut(s) 373, 427, 568
NmuCI GTSAC 1 cut(s) 356
PfeI GAWTC 4 cut(s) 4, 14, 177, 309
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Ppu21I YACGTR 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 3 cut(s) 373, 427, 568
PspPI GGNCC 2 cut(s) 41, 425
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 2 cut(s) 213, 223
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SaqAI TTAA 3 cut(s) 147, 332, 402
Sau3AI GATC 6 cut(s) 50, 213, 223, 459, 524, 751
Sau96I GGNCC 2 cut(s) 41, 425
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 3 cut(s) 138, 240, 252
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 2 cut(s) 41, 425
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
SnaBI TACGTA 1 cut(s) 466
Sse9I AATT 7 cut(s) 141, 303, 313, 326, 483, 594, 656
SsiI CCGC 1 cut(s) 69
SspI AATATT 2 cut(s) 125, 727
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 6 cut(s) 28, 45, 280, 351, 718, 794
TaiI ACGT 5 cut(s) 65, 153, 443, 468, 649
TasI AATT 7 cut(s) 141, 303, 313, 326, 483, 594, 656
TfiI GAWTC 4 cut(s) 4, 14, 177, 309
Tru1I TTAA 3 cut(s) 147, 332, 402
Tru9I TTAA 3 cut(s) 147, 332, 402
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 6 cut(s) 17, 332, 465, 476, 506, 650
TspGWI ACGGA 4 cut(s) 189, 438, 597, 774
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 41, 425
XapI RAATTY 2 cut(s) 326, 656
XmiI GTMKAC 1 cut(s) 649
ZraI GACGTC 2 cut(s) 63, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.