Rw2G052690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003966
Physical Location & Seq
Reverse (-)
80609637 .. 80611093
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052690.1

Sequence Viewer

Length: 846 bp
ATGAATCCTGAGGAATCCAAGAAAACCGTCGTTTCAGTCGGACCGTTTGGATCACCGACGTCGGGAGGAAGACCCTTTAATGATGGAATACACTCGGCAGTGAAAGGTTTGGCGATAGAATACTTGGAAGGGCACACAATTGTTAACGTCCGGTTTGAATATGACGACGACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTGAAGATCCCTTTGGATCTCTTGTCAGGGCTCTCCGAAGTGCTCTCCGACAACAACAAAGTGATCAGAAGAGAAACAGTAAACAAAGTCAGAAGGGAAACAATTAGATTCAATTATCCGGACGAATATTTAACTGCAGTTCATGGACGGTACTGTGACAACTTGTTGGGCGCCGTATGCGTCGTCAACTCACTTACTTTTAAGACCAATAGAAATACTTACGGACCCTTTGGTTGGACGTCTCAAAATGAAAAACTGATCAACTTATTCCCTTGTTTCTCAATTCATATGCCTGGAAGTGAGATTGTTGGCTTTCATGGCAGATCAAGCAGGAGTAAGTGGTTGGGTGGTATTTATTCAATAGGAGCCTATGTAAAGCCTTATCATCAACAAATTGAATACCCTCCGTCAAAAGCTCTGATGCTTTATCCATCAGAACCTCCACGTCTACCTGAATTTCATTCTCAAACCAAGCTCAATAAAGATGACAGACCTGAAAACCATAAACATTATACAGTTTCAAATATTCAAGTTAGCAGAAATGGGGGAGATCACAACGGAGCTTTCCATTTGGGCGACATATATGCAAACTGTTATATAAACAAACAAGAGTCGTCCTCAATCGGTTACGCCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

281

Amino Acids

31.59

Weight (kDa)

7.73

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 97 - 192 4.8e-17 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 62, 446
AccB1I GGYRCC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 652
AccIII TCCGGA 1 cut(s) 322
AclWI GGATC 3 cut(s) 58, 205, 228
AcsI RAATTY 1 cut(s) 659
AcyI GRCGYC 3 cut(s) 59, 375, 443
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 62, 438
AgsI TTSAA 6 cut(s) 158, 316, 564, 602, 726, 734
AjiI CACGTC 1 cut(s) 650
AjnI CCWGG 1 cut(s) 496
AjuI GAANNNNNNNTTGG 4 cut(s) 166, 198, 200, 232
AluBI AGCT 3 cut(s) 620, 679, 767
AluI AGCT 3 cut(s) 620, 679, 767
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 3 cut(s) 58, 205, 228
Aor13HI TCCGGA 1 cut(s) 322
ApoI RAATTY 1 cut(s) 659
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 2 cut(s) 41, 428
AsuHPI GGTGA 2 cut(s) 45, 212
AvaII GGWCC 2 cut(s) 41, 428
AxyI CCTNAGG 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 249
BccI CCATC 2 cut(s) 77, 643
BceAI ACGGC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 1 cut(s) 498
BclI TGATCA 2 cut(s) 267, 462
BcoDI GTCTC 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 2 cut(s) 41, 428
BmgBI CACGTC 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 41, 428
BmiI GGNNCC 3 cut(s) 376, 430, 571
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 615
BpiI GAAGAC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 806, 838
BsaHI GRCGYC 3 cut(s) 59, 375, 443
BsaWI WCCGGW 2 cut(s) 150, 322
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 438
Bse21I CCTNAGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 498
BseLI CCNNNNNNNGG 2 cut(s) 62, 438
BseMII CTCAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 374
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 2 cut(s) 151, 323
BslI CCNNNNNNNGG 2 cut(s) 62, 438
BsmAI GTCTC 1 cut(s) 450
BsmBI CGTCTC 1 cut(s) 450
Bsp1286I GDGCHC 3 cut(s) 135, 237, 249
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
BspCNI CTCAG 1 cut(s) 191
BspEI TCCGGA 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 376, 430, 571
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 3 cut(s) 58, 205, 228
BspT107I GGYRCC 1 cut(s) 374
BssMI GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
BssNI GRCGYC 3 cut(s) 59, 375, 443
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 7 cut(s) 28, 45, 283, 354, 359, 721, 797
Bst6I CTCTTC 1 cut(s) 268
BstACI GRCGYC 3 cut(s) 59, 375, 443
BstDEI CTNAG 2 cut(s) 9, 178
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 7 cut(s) 53, 213, 223, 270, 465, 530, 757
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
BstMWI GCNNNNNNNGC 3 cut(s) 381, 522, 531
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 2 cut(s) 210, 220
BstYI RGATCY 2 cut(s) 210, 220
Bsu36I CCTNAGG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 650
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 41, 428
CpoI CGGWCCG 1 cut(s) 41
CseI GACGC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 355
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 3 cut(s) 197, 347, 521
CviJI RGCY 7 cut(s) 235, 516, 572, 583, 620, 679, 767
CviKI_1 RGCY 7 cut(s) 235, 516, 572, 583, 620, 679, 767
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 9, 178
DinI GGCGCC 1 cut(s) 376
DpnI GATC 7 cut(s) 52, 212, 222, 269, 464, 529, 756
DpnII GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 41, 428
Eco81I CCTNAGG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 3 cut(s) 200, 350, 524
FatI CATG 3 cut(s) 196, 346, 520
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 2 cut(s) 267, 462
FblI GTMKAC 1 cut(s) 652
FriOI GRGCYC 1 cut(s) 237
GlaI GCGC 1 cut(s) 376
HaeII RGCGCY 1 cut(s) 378
HapII CCGG 2 cut(s) 151, 323
HgaI GACGC 1 cut(s) 373
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 3 cut(s) 59, 375, 443
Hin1II CATG 3 cut(s) 200, 350, 524
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 2 cut(s) 145, 391
HindII GTYRAC 2 cut(s) 145, 391
HinfI GANTC 5 cut(s) 4, 14, 174, 312, 815
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 2 cut(s) 151, 323
HphI GGTGA 2 cut(s) 45, 212
Hpy166II GTNNAC 4 cut(s) 145, 286, 391, 653
Hpy188I TCNGA 8 cut(s) 41, 190, 241, 253, 272, 296, 624, 640
Hpy188III TCNNGA 3 cut(s) 8, 63, 323
Hpy8I GTNNAC 4 cut(s) 145, 286, 391, 653
Hpy99I CGWCG 6 cut(s) 32, 61, 64, 170, 173, 389
HpyAV CCTTC 2 cut(s) 122, 291
HpyCH4III ACNGT 7 cut(s) 28, 45, 283, 354, 359, 721, 797
HpyCH4IV ACGT 4 cut(s) 59, 147, 443, 649
HpyCH4V TGCA 2 cut(s) 341, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 381, 522, 531
HpyF3I CTNAG 2 cut(s) 9, 178
HpySE526I ACGT 4 cut(s) 59, 147, 443, 649
Hsp92I GRCGYC 3 cut(s) 59, 375, 443
Hsp92II CATG 3 cut(s) 200, 350, 524
HspAI GCGC 1 cut(s) 375
KasI GGCGCC 1 cut(s) 374
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 2 cut(s) 267, 462
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
LmnI GCTCC 2 cut(s) 569, 764
LpnPI CCDG 9 cut(s) 21, 164, 216, 336, 483, 510, 520, 669, 711
LweI GCATC 1 cut(s) 615
MaeII ACGT 4 cut(s) 59, 147, 443, 649
MaeIII GTNAC 2 cut(s) 359, 830
MalI GATC 7 cut(s) 52, 212, 222, 269, 464, 529, 756
MboI GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
MboII GAAGA 3 cut(s) 81, 220, 285
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 210, 220
MhlI GDGCHC 3 cut(s) 135, 237, 249
MluCI AATT 6 cut(s) 138, 306, 316, 486, 597, 659
Mly113I GGCGCC 1 cut(s) 375
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 3 cut(s) 19, 276, 419
MnlI CCTC 5 cut(s) 4, 59, 618, 654, 832
MroI TCCGGA 1 cut(s) 322
MseI TTAA 4 cut(s) 78, 144, 335, 405
MspI CCGG 2 cut(s) 151, 323
MspR9I CCNGG 1 cut(s) 498
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 3 cut(s) 381, 522, 531
NarI GGCGCC 1 cut(s) 375
NdeI CATATG 1 cut(s) 492
NdeII GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
NlaIII CATG 3 cut(s) 200, 350, 524
NlaIV GGNNCC 3 cut(s) 376, 430, 571
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 359
PfeI GAWTC 4 cut(s) 4, 14, 174, 312
PleI GAGTC 1 cut(s) 823
PluTI GGCGCC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 823
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 3 cut(s) 376, 430, 571
PspPI GGNCC 2 cut(s) 41, 428
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 2 cut(s) 210, 220
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SaqAI TTAA 4 cut(s) 78, 144, 335, 405
Sau3AI GATC 7 cut(s) 50, 210, 220, 267, 462, 527, 754
Sau96I GGNCC 2 cut(s) 41, 428
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 3 cut(s) 135, 237, 249
SfaNI GCATC 1 cut(s) 615
SfcI CTRYAG 1 cut(s) 339
SfoI GGCGCC 1 cut(s) 376
SinI GGWCC 2 cut(s) 41, 428
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
Sse9I AATT 6 cut(s) 138, 306, 316, 486, 597, 659
SspDI GGCGCC 1 cut(s) 374
SspI AATATT 2 cut(s) 332, 730
StyD4I CCNGG 1 cut(s) 496
TaaI ACNGT 7 cut(s) 28, 45, 283, 354, 359, 721, 797
TaiI ACGT 4 cut(s) 62, 150, 446, 652
TasI AATT 6 cut(s) 138, 306, 316, 486, 597, 659
TfiI GAWTC 4 cut(s) 4, 14, 174, 312
Tru1I TTAA 4 cut(s) 78, 144, 335, 405
Tru9I TTAA 4 cut(s) 78, 144, 335, 405
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 6 cut(s) 17, 335, 468, 479, 509, 653
TspGWI ACGGA 4 cut(s) 186, 441, 600, 777
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 41, 428
XapI RAATTY 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 652
ZraI GACGTC 2 cut(s) 60, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.