RLG00000022123

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003966
Physical Location & Seq
Reverse (-)
81114172 .. 81119767
5596 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022123

Sequence Viewer

Length: 1362 bp
ATGAGTGGGAACCAAACAGCGAGGCTGAAGGAGATGGAGAACAGCTACGAGAGGGTTTTGGATGAGAATTGTAGGGTTTTCGGTGAGTATTTCAGGGAGGTTTTGGAGAATAAAGATGGAGGAAGAGTGATTGATCCACCGACCGTGGTGTTGGAATTGAGTGAAGGAAGTGATGAGTTCCGCAGCTCGATCTCACTCGCCCTATGTTCTTCTTTGGTTGACGCTATTAACTACCTCCAACGTACAATGAATCCTGAGGAATCCAAGAAAACCGTCGTTTCAGTCGGATCGTTTGCATCACCGACGTTGCGAGGAACACCCTTTAATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGATAGAATATTTGGAAAGGCACACAATTGTTAACGTCCGCTTGATCTCACTCGCCCTCTGTTCTCCTTTGGTCGACGCTATTAACTACCTCCAACGTACAATGAGTGGAATATGCATGTTAACTCTGCGACAGAATCCTGAAGAATCCAAGAAAACCGTCATTTCAGTCGGACCGTTTGGATCATCGACGTTGGGAGGAGAACCCTTTAATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGATAGAATATTTGGAAGGGAACACAATTGTTAACGTCCGGTTTGAATATGACGACGGCGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTAAAGATCACTTTGGATCTCTTGTCAGGGCTCTCTGAAGTGCTCTCCGGCAAGAACAAAGTCAGAAGAGAAATAGTAAACAAAGTCAGGAGAGAAACAATTAGATTCAATTATCCAGACGAATTTTTAACTGCAGTTCATGGACGGTATTGTGACAACTTGTTGGGTGCCGTATGCGTCGTCAACTCACTTACTTTTAAGACCAATAGAAATACTTACGGACCCTTTGGTTGGAAGACGTCTGGTTGTGAAAAACTGATCAACTTATTCCCTTGTTTCTCAATTCATATGCCTGGAAGTGAGATTGTTGGGTTTCATGGCAGATCAGGCCGGAGTAAGTGGTTGGGTGGTATTTATTCAATTGGAGCCTATGTAAAGCCTTATCATCAACAAATTGAATACCCTCCGTCAAAAGCTCTGATGCTTTATCCATCAGAACCTCCACGTCTACCTGAATTTCATTCTCAAACCAAGCTCAATCAAGATGACAGACCTCAAAACCATAAACATTATGCAGTTTCAAATATTCAAGTTAGCAGAAATGAGGGAGATCACAACGGAGCTTTCCATTTGGGCGACATATTTGCAAACTGTTATGTCAACCAAACAAGAGTCCTCAATCCAGATAAAGTAGGGCTAGATAAAGATCTCGGTTACGCCTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

454

Amino Acids

50.59

Weight (kDa)

6.68

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 176 - 355 1.7e-21 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 935
AccB1I GGYRCC 1 cut(s) 860
AccI GTMKAC 2 cut(s) 432, 1141
AciI CCGC 3 cut(s) 181, 397, 660
AclWI GGATC 4 cut(s) 128, 295, 547, 717
AcsI RAATTY 2 cut(s) 815, 1148
AcuI CTGAAG 3 cut(s) 47, 519, 750
AcyI GRCGYC 1 cut(s) 932
AfaI GTAC 2 cut(s) 244, 457
AfiI CCNNNNNNNGG 1 cut(s) 924
AgsI TTSAA 6 cut(s) 647, 802, 1053, 1091, 1215, 1223
AjiI CACGTC 1 cut(s) 1139
AjnI CCWGG 2 cut(s) 985, 1352
AjuI GAANNNNNNNTTGG 2 cut(s) 655, 687
AluBI AGCT 5 cut(s) 45, 186, 1109, 1168, 1256
AluI AGCT 5 cut(s) 45, 186, 1109, 1168, 1256
Alw21I GWGCWC 1 cut(s) 738
AlwI GGATC 4 cut(s) 128, 295, 547, 717
AoxI GGCC 1 cut(s) 1021
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 2 cut(s) 815, 1148
AspS9I GGNCC 2 cut(s) 530, 914
AsuHPI GGTGA 3 cut(s) 95, 291, 701
AvaII GGWCC 2 cut(s) 530, 914
AxyI CCTNAGG 1 cut(s) 255
BanI GGYRCC 1 cut(s) 860
BanII GRGCYC 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 1 cut(s) 195
BccI CCATC 5 cut(s) 28, 110, 323, 566, 1132
BceAI ACGGC 2 cut(s) 673, 848
BcgI CGANNNNNNTGC 2 cut(s) 1259, 1293
BciT130I CCWGG 2 cut(s) 987, 1354
BclI TGATCA 1 cut(s) 951
BfaI CTAG 1 cut(s) 1331
BfmI CTRYAG 1 cut(s) 825
BglII AGATCT 1 cut(s) 1339
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 987, 1354
Bme18I GGWCC 2 cut(s) 530, 914
BmgBI CACGTC 1 cut(s) 1139
BmgT120I GGNCC 2 cut(s) 530, 914
BmiI GGNNCC 4 cut(s) 11, 862, 916, 1060
BmrFI CCNGG 2 cut(s) 987, 1354
BmsI GCATC 2 cut(s) 305, 1104
BpiI GAAGAC 1 cut(s) 935
BsaBI GATNNNNATC 1 cut(s) 1338
BsaHI GRCGYC 1 cut(s) 932
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 639
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 1050, 1080
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse21I CCTNAGG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 1338
BseBI CCWGG 2 cut(s) 987, 1354
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 67
BseJI GATNNNNATC 1 cut(s) 1338
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMII CTCAG 4 cut(s) 246, 354, 597, 681
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 1023
BshNI GGYRCC 1 cut(s) 860
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 3 cut(s) 640, 741, 1024
BslI CCNNNNNNNGG 1 cut(s) 924
BsnI GGCC 1 cut(s) 1023
Bsp1286I GDGCHC 2 cut(s) 726, 738
BspACI CCGC 3 cut(s) 181, 397, 660
BspANI GGCC 1 cut(s) 1023
BspCNI CTCAG 4 cut(s) 247, 353, 596, 680
BspLI GGNNCC 4 cut(s) 11, 862, 916, 1060
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 4 cut(s) 128, 295, 547, 717
BspT107I GGYRCC 1 cut(s) 860
BssECI CCNNGG 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 932
Bst2UI CCWGG 2 cut(s) 987, 1354
Bst4CI ACNGT 6 cut(s) 145, 274, 517, 534, 840, 1286
Bst6I CTCTTC 2 cut(s) 118, 754
BstACI GRCGYC 1 cut(s) 932
BstDEI CTNAG 4 cut(s) 255, 340, 583, 667
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 67
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 1020
BstNI CCWGG 2 cut(s) 987, 1354
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 2 cut(s) 985, 1352
BstSFI CTRYAG 1 cut(s) 825
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 2 cut(s) 709, 1339
BstYI RGATCY 2 cut(s) 709, 1339
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 1 cut(s) 1023
BtgI CCRYGG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 1139
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 2 cut(s) 351, 594
BtsIMutI CAGTG 2 cut(s) 351, 594
Cfr13I GGNCC 2 cut(s) 530, 914
CpoI CGGWCCG 1 cut(s) 530
CseI GACGC 3 cut(s) 230, 443, 859
Csp6I GTAC 2 cut(s) 243, 456
CspI CGGWCCG 1 cut(s) 530
CviAII CATG 4 cut(s) 475, 686, 833, 1010
CviQI GTAC 2 cut(s) 243, 456
DdeI CTNAG 4 cut(s) 255, 340, 583, 667
Eam1104I CTCTTC 2 cut(s) 118, 754
EarI CTCTTC 2 cut(s) 118, 754
EciI GGCGGA 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 530, 914
Eco57I CTGAAG 3 cut(s) 47, 519, 750
Eco81I CCTNAGG 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 985, 1352
EcoT22I ATGCAT 1 cut(s) 476
EcoT38I GRGCYC 1 cut(s) 726
FaeI CATG 4 cut(s) 478, 689, 836, 1013
FatI CATG 4 cut(s) 474, 685, 832, 1009
FauNDI CATATG 1 cut(s) 981
FbaI TGATCA 1 cut(s) 951
FblI GTMKAC 2 cut(s) 432, 1141
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 1331
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 1 cut(s) 1023
HapII CCGG 3 cut(s) 640, 741, 1024
HgaI GACGC 3 cut(s) 230, 443, 859
Hin1I GRCGYC 1 cut(s) 932
Hin1II CATG 4 cut(s) 478, 689, 836, 1013
HincII GTYRAC 7 cut(s) 220, 391, 433, 480, 634, 877, 1294
HindII GTYRAC 7 cut(s) 220, 391, 433, 480, 634, 877, 1294
HinfI GANTC 7 cut(s) 250, 260, 493, 503, 663, 798, 1305
HpaI GTTAAC 3 cut(s) 391, 480, 634
HpaII CCGG 3 cut(s) 640, 741, 1024
HphI GGTGA 3 cut(s) 95, 291, 701
Hpy166II GTNNAC 9 cut(s) 220, 391, 433, 480, 634, 772, 877, 1142, 1294
Hpy188I TCNGA 7 cut(s) 287, 530, 679, 730, 758, 1113, 1129
Hpy188III TCNNGA 6 cut(s) 254, 497, 781, 809, 1175, 1316
Hpy8I GTNNAC 9 cut(s) 220, 391, 433, 480, 634, 772, 877, 1142, 1294
Hpy99I CGWCG 6 cut(s) 278, 307, 437, 550, 659, 875
HpyAV CCTTC 3 cut(s) 22, 158, 611
HpyCH4III ACNGT 6 cut(s) 145, 274, 517, 534, 840, 1286
HpyCH4IV ACGT 8 cut(s) 241, 305, 393, 454, 548, 636, 932, 1138
HpyCH4V TGCA 5 cut(s) 296, 474, 827, 1208, 1280
HpyF10VI GCNNNNNNNGC 1 cut(s) 1020
HpyF3I CTNAG 4 cut(s) 255, 340, 583, 667
HpySE526I ACGT 8 cut(s) 241, 305, 393, 454, 548, 636, 932, 1138
Hsp92I GRCGYC 1 cut(s) 932
Hsp92II CATG 4 cut(s) 478, 689, 836, 1013
Ksp22I TGATCA 1 cut(s) 951
KspAI GTTAAC 3 cut(s) 391, 480, 634
LmnI GCTCC 2 cut(s) 1058, 1253
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 2 cut(s) 305, 1104
MaeI CTAG 1 cut(s) 1331
MaeII ACGT 8 cut(s) 241, 305, 393, 454, 548, 636, 932, 1138
MaeIII GTNAC 2 cut(s) 845, 1346
MboII GAAGA 5 cut(s) 135, 201, 512, 771, 940
MfeI CAATTG 3 cut(s) 384, 627, 1053
MflI RGATCY 2 cut(s) 709, 1339
MhlI GDGCHC 2 cut(s) 726, 738
MlyI GAGTC 1 cut(s) 1314
MmeI TCCRAC 6 cut(s) 132, 262, 265, 475, 508, 905
Mph1103I ATGCAT 1 cut(s) 476
MseI TTAA 9 cut(s) 228, 324, 390, 441, 479, 567, 633, 821, 891
MspI CCGG 3 cut(s) 640, 741, 1024
MspR9I CCNGG 2 cut(s) 987, 1354
MunI CAATTG 3 cut(s) 384, 627, 1053
MvaI CCWGG 2 cut(s) 987, 1354
MwoI GCNNNNNNNGC 1 cut(s) 1020
NdeI CATATG 1 cut(s) 981
NlaIII CATG 4 cut(s) 478, 689, 836, 1013
NlaIV GGNNCC 4 cut(s) 11, 862, 916, 1060
NmuCI GTSAC 1 cut(s) 845
NsiI ATGCAT 1 cut(s) 476
NspI RCATGY 1 cut(s) 478
PfeI GAWTC 6 cut(s) 250, 260, 493, 503, 663, 798
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 1313
PpsI GAGTC 1 cut(s) 1313
Psp6I CCWGG 2 cut(s) 985, 1352
PspGI CCWGG 2 cut(s) 985, 1352
PspN4I GGNNCC 4 cut(s) 11, 862, 916, 1060
PspPI GGNCC 2 cut(s) 530, 914
PstI CTGCAG 1 cut(s) 829
PsuI RGATCY 2 cut(s) 709, 1339
RsaI GTAC 2 cut(s) 244, 457
RsaNI GTAC 2 cut(s) 243, 456
Rsr2I CGGWCCG 1 cut(s) 530
RsrII CGGWCCG 1 cut(s) 530
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 9 cut(s) 228, 324, 390, 441, 479, 567, 633, 821, 891
SatI GCNGC 1 cut(s) 184
Sau96I GGNCC 2 cut(s) 530, 914
SchI GAGTC 1 cut(s) 1314
ScrFI CCNGG 2 cut(s) 987, 1354
SduI GDGCHC 2 cut(s) 726, 738
SfaNI GCATC 2 cut(s) 305, 1104
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 530, 914
SsiI CCGC 3 cut(s) 181, 397, 660
SspI AATATT 3 cut(s) 368, 611, 1219
SspMI CTAG 1 cut(s) 1331
StyD4I CCNGG 2 cut(s) 985, 1352
TaaI ACNGT 6 cut(s) 145, 274, 517, 534, 840, 1286
TaiI ACGT 8 cut(s) 244, 308, 396, 457, 551, 639, 935, 1141
TaqI TCGA 3 cut(s) 188, 432, 545
TfiI GAWTC 6 cut(s) 250, 260, 493, 503, 663, 798
Tru1I TTAA 9 cut(s) 228, 324, 390, 441, 479, 567, 633, 821, 891
Tru9I TTAA 9 cut(s) 228, 324, 390, 441, 479, 567, 633, 821, 891
TscAI CASTG 2 cut(s) 351, 594
TseFI GTSAC 1 cut(s) 845
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 845
TspDTI ATGAA 5 cut(s) 263, 821, 968, 998, 1142
TspGWI ACGGA 3 cut(s) 927, 1089, 1266
TspRI CASTG 2 cut(s) 351, 594
VpaK11BI GGWCC 2 cut(s) 530, 914
XapI RAATTY 2 cut(s) 815, 1148
XceI RCATGY 1 cut(s) 478
XmiI GTMKAC 2 cut(s) 432, 1141
XspI CTAG 1 cut(s) 1331
ZraI GACGTC 1 cut(s) 933
Zsp2I ATGCAT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.