Rh2AG031900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003966
Physical Location & Seq
Forward (+)
2189735 .. 2190886
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG031900.1

Sequence Viewer

Length: 615 bp
ATGAGTCTTGAGGAATCCAAGAAAACCGTTGTTTCAGTCGGGCCGTTTGGAGAAAATAAGCGAGTAATACCCTTTAATGATGGAGTACACTCAGCAGTGAAAGGTTTGGAGATGGTCTATTTGAAAGGTGAAAGGGGACATATTCTCAACGTCCGGTTTGAATATGAAGACGACGGAATCTCAGTTTGGGGAGACAGGCATGGTACAAGTATCATTTTGGATGTCGTAATGACAGGGCTGCTCGGAACCGACATCAGAAGAGAATGCTTTCAAATTTTCAATTATCCAGACGAATTTTTGACTTCAGTTGATGGAAATTATGAAGCAAACTTGTCGGGGTCCTGGCTATCCTCACTTACTTTTAACACCAACAGAAAAACTTACGGACCCTTTGGATCGACTCCAAATCGCAATCGGAGAAGCTATTTCTCAATTCATGTGCCTGGAAGTAAGATTGTTGGTTTTCATGGCAGATCACACAGGTGGTGGAGTGGCAGTTTTGACATAGGAGCATACCTAAAGCCTATTGATCAACAAAGTGAATATGCATCTTCAACAGTACTGGTAATATCAAAATGTTTTAATTATTTTTGTTTTGTTGGTCACTTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

204

Amino Acids

23.01

Weight (kDa)

7.05

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 13 - 160 4.3e-22 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 2 cut(s) 273, 293
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 3 cut(s) 87, 205, 561
AgsI TTSAA 5 cut(s) 124, 161, 272, 280, 555
AjnI CCWGG 2 cut(s) 341, 442
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AleI CACNNNNGTG 1 cut(s) 481
AluBI AGCT 1 cut(s) 423
AluI AGCT 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 2 cut(s) 273, 293
Asp700I GAANNNNTTC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 41, 339, 386
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 339, 386
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 225
BccI CCATC 3 cut(s) 74, 106, 305
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 2 cut(s) 343, 444
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 186
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 343, 444
Bme18I GGWCC 2 cut(s) 339, 386
BmgT120I GGNCC 3 cut(s) 41, 339, 386
BmiI GGNNCC 3 cut(s) 247, 340, 388
BmrFI CCNGG 2 cut(s) 343, 444
BmsI GCATC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bse1I ACTGG 1 cut(s) 567
BseBI CCWGG 2 cut(s) 343, 444
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 105, 195
BseNI ACTGG 1 cut(s) 567
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 3 cut(s) 395, 473, 529
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 104, 194
BspLI GGNNCC 3 cut(s) 247, 340, 388
BspPI GGATC 1 cut(s) 403
BsrI ACTGG 1 cut(s) 567
BssMI GATC 3 cut(s) 395, 473, 529
Bst2UI CCWGG 2 cut(s) 343, 444
Bst4CI ACNGT 2 cut(s) 28, 559
Bst6I CTCTTC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 91, 181
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 398, 476, 532
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 395, 473, 529
BstNI CCWGG 2 cut(s) 343, 444
BstSCI CCNGG 2 cut(s) 341, 442
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cfr13I GGNCC 3 cut(s) 41, 339, 386
Csp6I GTAC 3 cut(s) 86, 204, 560
CviAII CATG 3 cut(s) 200, 437, 467
CviJI RGCY 5 cut(s) 43, 238, 346, 423, 523
CviKI_1 RGCY 5 cut(s) 43, 238, 346, 423, 523
CviQI GTAC 3 cut(s) 86, 204, 560
DdeI CTNAG 2 cut(s) 91, 181
DpnI GATC 3 cut(s) 397, 475, 531
DpnII GATC 3 cut(s) 395, 473, 529
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 339, 386
Eco57I CTGAAG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 2 cut(s) 341, 442
EcoT22I ATGCAT 1 cut(s) 550
FaeI CATG 3 cut(s) 203, 440, 470
FaiI YATR 9 cut(s) 141, 165, 201, 321, 438, 468, 506, 514, 546
FaqI GGGAC 1 cut(s) 150
FatI CATG 3 cut(s) 199, 436, 466
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 154
Hin1II CATG 3 cut(s) 203, 440, 470
HinfI GANTC 4 cut(s) 4, 14, 177, 400
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 245, 257, 417, 614
Hpy188III TCNNGA 2 cut(s) 8, 287
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 28, 559
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 548
HpyF3I CTNAG 2 cut(s) 91, 181
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 3 cut(s) 203, 440, 470
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 395, 473, 529
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 557
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 602
MalI GATC 3 cut(s) 397, 475, 531
MboI GATC 3 cut(s) 395, 473, 529
MboII GAAGA 3 cut(s) 179, 270, 543
MluCI AATT 6 cut(s) 273, 280, 293, 316, 432, 583
MlyI GAGTC 2 cut(s) 13, 394
MnlI CCTC 2 cut(s) 4, 361
Mph1103I ATGCAT 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 3 cut(s) 75, 363, 582
MslI CAYNNNNRTG 1 cut(s) 481
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 343, 444
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 343, 444
NdeII GATC 3 cut(s) 395, 473, 529
NlaIII CATG 3 cut(s) 203, 440, 470
NlaIV GGNNCC 3 cut(s) 247, 340, 388
NmuCI GTSAC 1 cut(s) 602
NsiI ATGCAT 1 cut(s) 550
OliI CACNNNNGTG 1 cut(s) 481
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 14, 177
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 2 cut(s) 12, 394
PpsI GAGTC 2 cut(s) 12, 394
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 341, 442
PspGI CCWGG 2 cut(s) 341, 442
PspN4I GGNNCC 3 cut(s) 247, 340, 388
PspPI GGNCC 3 cut(s) 41, 339, 386
PspPPI RGGWCCY 1 cut(s) 339
RsaI GTAC 3 cut(s) 87, 205, 561
RsaNI GTAC 3 cut(s) 86, 204, 560
RseI CAYNNNNRTG 1 cut(s) 481
SaqAI TTAA 3 cut(s) 75, 363, 582
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 3 cut(s) 395, 473, 529
Sau96I GGNCC 3 cut(s) 41, 339, 386
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 2 cut(s) 13, 394
ScrFI CCNGG 2 cut(s) 343, 444
SetI ASST 6 cut(s) 106, 130, 153, 425, 485, 519
SfaNI GCATC 1 cut(s) 557
SinI GGWCC 2 cut(s) 339, 386
SmiMI CAYNNNNRTG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 6 cut(s) 273, 280, 293, 316, 432, 583
StyD4I CCNGG 2 cut(s) 341, 442
TaaI ACNGT 2 cut(s) 28, 559
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 398
TasI AATT 6 cut(s) 273, 280, 293, 316, 432, 583
TatI WGTACW 2 cut(s) 85, 559
TfiI GAWTC 2 cut(s) 14, 177
Tru1I TTAA 3 cut(s) 75, 363, 582
Tru9I TTAA 3 cut(s) 75, 363, 582
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 4 cut(s) 180, 336, 425, 455
TspGWI ACGGA 2 cut(s) 189, 399
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 339, 386
XapI RAATTY 2 cut(s) 273, 293
XmnI GAANNNNTTC 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 561
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.