Rroxscaffold_2G00120600

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003966
Physical Location & Seq
Reverse (-)
52918907 .. 52920290
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120600.1

Sequence Viewer

Length: 357 bp
ATGAATCCTGAGGAATCCAAGAAAACCGTCGTTTCAGTCGGACCGTTTGGATCACCGACGTTGCGAGGTACACCATTTAATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGATAGAATATTTGGAAGGGCACACAATTGTTAACGTCCGGTTTGAATATGACGACGACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTAAAGATCCCTTTGGATCTCTTGTCAGGGCTCTCCGAAATGCTCTCCGACAACAACAAAGTCAGAAGAGAAACAGTAAACAAAGTCAGAATAGAAACAAAATTAATTACTGATCCATGCAGATTAGATTCAATTATCCGGACGAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

5.58

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 342
AclWI GGATC 4 cut(s) 58, 205, 228, 311
AcsI RAATTY 1 cut(s) 349
AfaI GTAC 1 cut(s) 70
AgsI TTSAA 2 cut(s) 158, 336
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AlwI GGATC 4 cut(s) 58, 205, 228, 311
Aor13HI TCCGGA 1 cut(s) 342
ApoI RAATTY 1 cut(s) 349
AseI ATTAAT 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 45, 212
AvaII GGWCC 1 cut(s) 41
AxyI CCTNAGG 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 237
BccI CCATC 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BsaWI WCCGGW 2 cut(s) 150, 342
Bse21I CCTNAGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 342
BseMII CTCAG 2 cut(s) 108, 192
BseSI GKGCMC 1 cut(s) 135
BsiSI CCGG 2 cut(s) 151, 343
Bsp1286I GDGCHC 2 cut(s) 135, 237
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 4 cut(s) 50, 210, 220, 316
BspCNI CTCAG 2 cut(s) 107, 191
BspEI TCCGGA 1 cut(s) 342
BspPI GGATC 4 cut(s) 58, 205, 228, 311
BssMI GATC 4 cut(s) 50, 210, 220, 316
Bst4CI ACNGT 3 cut(s) 28, 45, 280
Bst6I CTCTTC 1 cut(s) 265
BstDEI CTNAG 3 cut(s) 9, 94, 178
BstKTI GATC 4 cut(s) 53, 213, 223, 319
BstMBI GATC 4 cut(s) 50, 210, 220, 316
BstSLI GKGCMC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 210, 220
BstYI RGATCY 2 cut(s) 210, 220
Bsu36I CCTNAGG 1 cut(s) 9
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 41
CpoI CGGWCCG 1 cut(s) 41
Csp6I GTAC 1 cut(s) 69
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 2 cut(s) 197, 321
CviJI RGCY 1 cut(s) 235
CviKI_1 RGCY 1 cut(s) 235
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 3 cut(s) 9, 94, 178
DpnI GATC 4 cut(s) 52, 212, 222, 318
DpnII GATC 4 cut(s) 50, 210, 220, 316
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 2 cut(s) 200, 324
FaiI YATR 3 cut(s) 162, 198, 322
FatI CATG 2 cut(s) 196, 320
FriOI GRGCYC 1 cut(s) 237
HapII CCGG 2 cut(s) 151, 343
Hin1II CATG 2 cut(s) 200, 324
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 4 cut(s) 4, 14, 174, 332
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 2 cut(s) 151, 343
HphI GGTGA 2 cut(s) 45, 212
Hpy166II GTNNAC 3 cut(s) 71, 145, 283
Hpy188I TCNGA 6 cut(s) 41, 190, 241, 253, 269, 293
Hpy188III TCNNGA 2 cut(s) 8, 343
Hpy8I GTNNAC 3 cut(s) 71, 145, 283
Hpy99I CGWCG 4 cut(s) 32, 61, 170, 173
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 3 cut(s) 28, 45, 280
HpyCH4IV ACGT 2 cut(s) 59, 147
HpyCH4V TGCA 1 cut(s) 324
HpyF3I CTNAG 3 cut(s) 9, 94, 178
HpySE526I ACGT 2 cut(s) 59, 147
Hsp92II CATG 2 cut(s) 200, 324
Kpn2I TCCGGA 1 cut(s) 342
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 4 cut(s) 50, 210, 220, 316
LpnPI CCDG 3 cut(s) 21, 164, 216
MaeII ACGT 2 cut(s) 59, 147
MalI GATC 4 cut(s) 52, 212, 222, 318
MboI GATC 4 cut(s) 50, 210, 220, 316
MboII GAAGA 1 cut(s) 282
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 210, 220
MhlI GDGCHC 2 cut(s) 135, 237
MluCI AATT 5 cut(s) 138, 305, 309, 336, 349
MmeI TCCRAC 2 cut(s) 19, 276
MnlI CCTC 2 cut(s) 4, 59
MroI TCCGGA 1 cut(s) 342
MseI TTAA 4 cut(s) 78, 144, 308, 355
MspI CCGG 2 cut(s) 151, 343
MunI CAATTG 1 cut(s) 138
NdeII GATC 4 cut(s) 50, 210, 220, 316
NlaIII CATG 2 cut(s) 200, 324
PfeI GAWTC 4 cut(s) 4, 14, 174, 332
PshBI ATTAAT 1 cut(s) 308
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 210, 220
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SaqAI TTAA 4 cut(s) 78, 144, 308, 355
Sau3AI GATC 4 cut(s) 50, 210, 220, 316
Sau96I GGNCC 1 cut(s) 41
SduI GDGCHC 2 cut(s) 135, 237
SetI ASST 4 cut(s) 62, 70, 109, 150
SgeI CNNG 9 cut(s) 20, 31, 77, 163, 205, 209, 238, 243, 333
SinI GGWCC 1 cut(s) 41
Sse9I AATT 5 cut(s) 138, 305, 309, 336, 349
SspI AATATT 1 cut(s) 122
TaaI ACNGT 3 cut(s) 28, 45, 280
TaiI ACGT 2 cut(s) 62, 150
TasI AATT 5 cut(s) 138, 305, 309, 336, 349
TfiI GAWTC 4 cut(s) 4, 14, 174, 332
Tru1I TTAA 4 cut(s) 78, 144, 308, 355
Tru9I TTAA 4 cut(s) 78, 144, 308, 355
TscAI CASTG 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 41
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.