RLG00000022128

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003966
Physical Location & Seq
Reverse (-)
81184621 .. 81185601
981 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022128

Sequence Viewer

Length: 780 bp
ATGAATCTTGAGCAATCCAAGAAAACCGTTGTTGCAGTCGGACCGTTTGGATCATCAACAGAGCGAGGAAAACCCTTTAATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGTTAGAATATACGGAAGGGTGCATAATTACCAACGTCCGGTTTGAATATGACGACAACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGGAAAGACCGGTTTGGAGCTCTTGTCAGGGCTCATGGAAGTGCTCTCAAACGACATCAAAGTCAGAAGAGAAAGCATTCAATTCAATTATCCAGGCGAATTTTTAACTGCAGTTGATGGACGGTATTGTGAAACCTTTTTCGGGGACGGTGGCGTCGCATCACTTACTTTTAAGACCAACAGAAATACTTACGGACCCTTTGGTTCGACGTCTCAAAATTTCAAACTGACGAAACTCTCCTGTTTCTCAATTCATGTGCCCGGAAGTAAGATTGTTGGCTTTCACGGCAGATCAAAGAGTAAGTGGTCCGGTGGTATTTATTCAATAGGAGCCTACGTAAAGCCTTACCATCAACAAATTGAATACCCTCAAAACCAGAAACGTTACGCGGTTAAAGATATTCAAGTTAGTGGAAACAAGGGAAACCACAACGCAGAATTCCATCTGGGCGACACGTATAACTGTTACATCGAAAAAGCCATTGTGTCCAGATTATCTCAATCAAGCAAGAGTTGTCAATCCAAACAAAGTGAGGTTAAAGAAGGATCGGTTACGCCTTGGGATGGCACCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

260

Amino Acids

28.63

Weight (kDa)

8.66

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 13 - 180 1.1e-23 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 263, 356
AatII GACGTC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 770
AccII CGCG 1 cut(s) 593
AciI CCGC 1 cut(s) 593
AclI AACGTT 1 cut(s) 586
AclWI GGATC 2 cut(s) 58, 757
AcsI RAATTY 3 cut(s) 302, 421, 641
AcyI GRCGYC 2 cut(s) 357, 413
AfiI CCNNNNNNNGG 3 cut(s) 150, 345, 767
AflIII ACRYGT 1 cut(s) 657
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 7 cut(s) 158, 284, 289, 427, 528, 566, 608
AjnI CCWGG 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw21I GWGCWC 2 cut(s) 225, 249
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 2 cut(s) 58, 757
ApoI RAATTY 3 cut(s) 302, 421, 641
AsiGI ACCGGT 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 3 cut(s) 41, 398, 510
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 3 cut(s) 41, 398, 510
BaeGI GKGCMC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 770
BanII GRGCYC 2 cut(s) 225, 237
Bbv12I GWGCWC 2 cut(s) 225, 249
BccI CCATC 5 cut(s) 77, 314, 561, 654, 761
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 297
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 1 cut(s) 778
BfmI CTRYAG 1 cut(s) 312
Bme1390I CCNGG 2 cut(s) 297, 465
Bme18I GGWCC 3 cut(s) 41, 398, 510
BmgT120I GGNCC 3 cut(s) 41, 398, 510
BmiI GGNNCC 3 cut(s) 400, 535, 772
BmrFI CCNGG 2 cut(s) 297, 465
BmsI GCATC 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 465
BsaAI YACGTR 2 cut(s) 541, 660
BsaHI GRCGYC 2 cut(s) 357, 413
BsaJI CCNNGG 1 cut(s) 761
BsaWI WCCGGW 3 cut(s) 150, 212, 512
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 345, 767
Bse118I RCCGGY 1 cut(s) 212
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 761
BseGI GGATG 1 cut(s) 772
BseLI CCNNNNNNNGG 3 cut(s) 150, 345, 767
BseMII CTCAG 2 cut(s) 108, 192
BseSI GKGCMC 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 593
BshNI GGYRCC 1 cut(s) 770
BshTI ACCGGT 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 225, 249
BsiSI CCGG 4 cut(s) 151, 213, 465, 513
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 150, 345, 767
BsmAI GTCTC 1 cut(s) 420
BsmBI CGTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 279
Bsp1286I GDGCHC 4 cut(s) 225, 237, 249, 465
Bsp143I GATC 3 cut(s) 50, 494, 749
BspACI CCGC 1 cut(s) 593
BspCNI CTCAG 2 cut(s) 107, 191
BspFNI CGCG 1 cut(s) 593
BspLI GGNNCC 3 cut(s) 400, 535, 772
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 2 cut(s) 58, 757
BspT107I GGYRCC 1 cut(s) 770
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 761
BssMI GATC 3 cut(s) 50, 494, 749
BssNI GRCGYC 2 cut(s) 357, 413
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 5 cut(s) 28, 45, 327, 353, 668
Bst6I CTCTTC 1 cut(s) 265
BstACI GRCGYC 2 cut(s) 357, 413
BstBAI YACGTR 2 cut(s) 541, 660
BstDEI CTNAG 2 cut(s) 94, 178
BstF5I GGATG 1 cut(s) 772
BstFNI CGCG 1 cut(s) 593
BstKTI GATC 3 cut(s) 53, 497, 752
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 3 cut(s) 50, 494, 749
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 295, 463
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 465
BstSNI TACGTA 1 cut(s) 541
BstUI CGCG 1 cut(s) 593
BtsCI GGATG 1 cut(s) 772
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 41, 398, 510
CpoI CGGWCCG 1 cut(s) 41
CseI GACGC 1 cut(s) 346
CspAI ACCGGT 1 cut(s) 212
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 3 cut(s) 197, 238, 458
CviJI RGCY 6 cut(s) 223, 235, 483, 536, 547, 683
CviKI_1 RGCY 6 cut(s) 223, 235, 483, 536, 547, 683
DdeI CTNAG 2 cut(s) 94, 178
DpnI GATC 3 cut(s) 52, 496, 751
DpnII GATC 3 cut(s) 50, 494, 749
DrdI GACNNNNNNGTC 2 cut(s) 263, 356
DseDI GACNNNNNNGTC 2 cut(s) 263, 356
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 223
Eco105I TACGTA 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 761
Eco24I GRGCYC 2 cut(s) 225, 237
Eco47I GGWCC 3 cut(s) 41, 398, 510
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 641
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 761
EcoT38I GRGCYC 2 cut(s) 225, 237
ErhI CCWWGG 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 3 cut(s) 200, 241, 461
FaiI YATR 7 cut(s) 123, 137, 162, 198, 239, 459, 663
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 196, 237, 457
FriOI GRGCYC 2 cut(s) 225, 237
FspBI CTAG 1 cut(s) 778
HapII CCGG 4 cut(s) 151, 213, 465, 513
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 2 cut(s) 357, 413
Hin1II CATG 3 cut(s) 200, 241, 461
HinfI GANTC 2 cut(s) 4, 174
HpaII CCGG 4 cut(s) 151, 213, 465, 513
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 41, 190, 269
Hpy188III TCNNGA 2 cut(s) 8, 693
Hpy99I CGWCG 2 cut(s) 362, 415
HpyAV CCTTC 3 cut(s) 122, 197, 740
HpyCH4III ACNGT 5 cut(s) 28, 45, 327, 353, 668
HpyCH4IV ACGT 5 cut(s) 147, 413, 540, 586, 659
HpyCH4V TGCA 3 cut(s) 35, 135, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpyF3I CTNAG 2 cut(s) 94, 178
HpySE526I ACGT 5 cut(s) 147, 413, 540, 586, 659
Hsp92I GRCGYC 2 cut(s) 357, 413
Hsp92II CATG 3 cut(s) 200, 241, 461
Kzo9I GATC 3 cut(s) 50, 494, 749
LmnI GCTCC 2 cut(s) 220, 533
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 778
MaeII ACGT 5 cut(s) 147, 413, 540, 586, 659
MaeIII GTNAC 3 cut(s) 587, 668, 754
MalI GATC 3 cut(s) 52, 496, 751
MboI GATC 3 cut(s) 50, 494, 749
MboII GAAGA 1 cut(s) 282
MhlI GDGCHC 4 cut(s) 225, 237, 249, 465
MluCI AATT 8 cut(s) 138, 284, 289, 302, 421, 453, 561, 641
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 59, 582, 730
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 5 cut(s) 78, 308, 375, 597, 741
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 4 cut(s) 151, 213, 465, 513
MspR9I CCNGG 2 cut(s) 297, 465
Mva1269I GAATGC 1 cut(s) 279
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 1 cut(s) 489
NciI CCSGG 1 cut(s) 465
NdeII GATC 3 cut(s) 50, 494, 749
NlaIII CATG 3 cut(s) 200, 241, 461
NlaIV GGNNCC 3 cut(s) 400, 535, 772
PctI GAATGC 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 4, 174
PinAI ACCGGT 1 cut(s) 212
Ppu21I YACGTR 2 cut(s) 541, 660
Psp124BI GAGCTC 1 cut(s) 225
Psp1406I AACGTT 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 400, 535, 772
PspPI GGNCC 3 cut(s) 41, 398, 510
PstI CTGCAG 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 242
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 5 cut(s) 78, 308, 375, 597, 741
Sau3AI GATC 3 cut(s) 50, 494, 749
Sau96I GGNCC 3 cut(s) 41, 398, 510
ScrFI CCNGG 2 cut(s) 297, 465
SduI GDGCHC 4 cut(s) 225, 237, 249, 465
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 3 cut(s) 41, 398, 510
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SnaBI TACGTA 1 cut(s) 541
Sse9I AATT 8 cut(s) 138, 284, 289, 302, 421, 453, 561, 641
SsiI CCGC 1 cut(s) 593
SspMI CTAG 1 cut(s) 778
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 295, 463
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 5 cut(s) 28, 45, 327, 353, 668
TaiI ACGT 5 cut(s) 150, 416, 543, 589, 662
TaqI TCGA 2 cut(s) 410, 675
TasI AATT 8 cut(s) 138, 284, 289, 302, 421, 453, 561, 641
TfiI GAWTC 2 cut(s) 4, 174
Tru1I TTAA 5 cut(s) 78, 308, 375, 597, 741
Tru9I TTAA 5 cut(s) 78, 308, 375, 597, 741
TscAI CASTG 1 cut(s) 105
TspDTI ATGAA 2 cut(s) 17, 446
TspGWI ACGGA 3 cut(s) 140, 186, 411
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 3 cut(s) 41, 398, 510
XapI RAATTY 3 cut(s) 302, 421, 641
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 778
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.