Rroxscaffold_2G00079670

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003966
Physical Location & Seq
Forward (+)
2643080 .. 2645647
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079670.1

Sequence Viewer

Length: 627 bp
ATGACGACGACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTACAGATCGCTTTGGATTTCTTGTCAGGGCTCTTCGAAGTGCTCTCCGACGACAACAAATTCAGAAGAGAAAGAGTACATTAGATTCAATTATCCAGACGAATTTTTAACTGCAGTTCATGGACGGTATAGTGAAAACTTGTTCGGGAAGGGTGCAGTCGACTCACTTACTTTTAAGACCAGTAGAAATACTTACGGACCCTTTGGTTGGACGCCTCAAAATGAAAAGCTGATCAAAGTCTCTTGTTTCTCAATTCATATGCCTGGAAGTAAGATTGTTGGCTTTCATGGCAGATCAGGGAGTAAGTGGTCGGGTGGTATTTATTCAATAGGAGCCTACCTCAAGCCTTATCATCAACAAATTGAATACCTTCCGTCAAAAGCTCTGATGCTTTATCCATCGAACCTCCACGTCTACCTGAATTTCATTCTCAAGCCAGGCTCCATAAAGATGACAGACCTCAAAACCATAAACATTATGCAGTTTCAAATATTCAAGTTAGCAGAAATGAGGGAGATCACAACGGAGCTTTCCATTTGGGCGACATATATGCAAACTGTTATATCGAAAAAGCACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

208

Amino Acids

23.74

Weight (kDa)

9.4

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 35 - 128 3.2e-17 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 204, 459
AcsI RAATTY 3 cut(s) 103, 146, 466
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 2 cut(s) 47, 122
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 5 cut(s) 133, 372, 410, 533, 541
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 2 cut(s) 307, 481
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 3 cut(s) 274, 428, 574
AluI AGCT 3 cut(s) 274, 428, 574
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 289
ApoI RAATTY 3 cut(s) 103, 146, 466
Asp700I GAANNNNTTC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 1 cut(s) 451
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 2 cut(s) 309, 483
BclI TGATCA 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 309, 483
Bme18I GGWCC 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 244, 379, 487
BmrFI CCNGG 2 cut(s) 309, 483
BmsI GCATC 1 cut(s) 423
BplI GAGNNNNNCTC 2 cut(s) 369, 401
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 371, 461
BsaHI GRCGYC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 309, 483
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 289
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 77, 89
Bsp143I GATC 4 cut(s) 50, 276, 338, 561
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 244, 379, 487
BspMAI CTGCAG 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 80
BsrI ACTGG 1 cut(s) 225
BssMI GATC 4 cut(s) 50, 276, 338, 561
BssNI GRCGYC 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 309, 483
Bst4CI ACNGT 2 cut(s) 171, 604
Bst6I CTCTTC 2 cut(s) 82, 105
BstACI GRCGYC 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 4 cut(s) 53, 279, 341, 564
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 4 cut(s) 50, 276, 338, 561
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNI CCWGG 2 cut(s) 309, 483
BstSCI CCNGG 2 cut(s) 307, 481
BstSFI CTRYAG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 46, 121
CviAII CATG 3 cut(s) 37, 164, 332
CviJI RGCY 9 cut(s) 75, 274, 327, 380, 391, 428, 481, 486, 574
CviKI_1 RGCY 9 cut(s) 75, 274, 327, 380, 391, 428, 481, 486, 574
CviQI GTAC 2 cut(s) 46, 121
DdeI CTNAG 1 cut(s) 18
DpnI GATC 4 cut(s) 52, 278, 340, 563
DpnII GATC 4 cut(s) 50, 276, 338, 561
Eam1104I CTCTTC 2 cut(s) 82, 105
EarI CTCTTC 2 cut(s) 82, 105
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 307, 481
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 3 cut(s) 40, 167, 335
FatI CATG 3 cut(s) 36, 163, 331
FauNDI CATATG 1 cut(s) 303
FbaI TGATCA 1 cut(s) 276
FblI GTMKAC 2 cut(s) 204, 459
FriOI GRGCYC 1 cut(s) 77
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 3 cut(s) 40, 167, 335
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 3 cut(s) 14, 129, 206
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 205, 460
Hpy188I TCNGA 4 cut(s) 30, 93, 109, 432
Hpy188III TCNNGA 2 cut(s) 140, 190
Hpy8I GTNNAC 2 cut(s) 205, 460
Hpy99I CGWCG 3 cut(s) 10, 13, 97
HpyAV CCTTC 2 cut(s) 187, 425
HpyCH4III ACNGT 2 cut(s) 171, 604
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 4 cut(s) 158, 200, 526, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 3 cut(s) 40, 167, 335
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 4 cut(s) 50, 276, 338, 561
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 377, 491, 571
LpnPI CCDG 9 cut(s) 56, 153, 238, 294, 321, 327, 468, 476, 495
LweI GCATC 1 cut(s) 423
MaeII ACGT 1 cut(s) 456
MalI GATC 4 cut(s) 52, 278, 340, 563
MboI GATC 4 cut(s) 50, 276, 338, 561
MboII GAAGA 2 cut(s) 69, 122
MhlI GDGCHC 2 cut(s) 77, 89
MluCI AATT 6 cut(s) 103, 133, 146, 297, 405, 466
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 116, 233
MnlI CCTC 5 cut(s) 270, 395, 461, 515, 549
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 2 cut(s) 152, 219
MslI CAYNNNNRTG 1 cut(s) 494
MspR9I CCNGG 2 cut(s) 309, 483
MvaI CCWGG 2 cut(s) 309, 483
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeI CATATG 1 cut(s) 303
NdeII GATC 4 cut(s) 50, 276, 338, 561
NlaIII CATG 3 cut(s) 40, 167, 335
NlaIV GGNNCC 3 cut(s) 244, 379, 487
NspV TTCGAA 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 2 cut(s) 14, 129
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 307, 481
PspGI CCWGG 2 cut(s) 307, 481
PspN4I GGNNCC 3 cut(s) 244, 379, 487
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 2 cut(s) 47, 122
RsaNI GTAC 2 cut(s) 46, 121
RseI CAYNNNNRTG 1 cut(s) 494
SalI GTCGAC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 152, 219
Sau3AI GATC 4 cut(s) 50, 276, 338, 561
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 309, 483
SduI GDGCHC 2 cut(s) 77, 89
SetI ASST 9 cut(s) 276, 387, 417, 430, 453, 459, 465, 507, 576
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 386, 476
SmoI CTYRAG 2 cut(s) 386, 476
Sse9I AATT 6 cut(s) 103, 133, 146, 297, 405, 466
SspI AATATT 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 307, 481
TaaI ACNGT 2 cut(s) 171, 604
TaiI ACGT 1 cut(s) 459
TaqI TCGA 4 cut(s) 80, 204, 446, 611
TasI AATT 6 cut(s) 103, 133, 146, 297, 405, 466
TatI WGTACW 2 cut(s) 45, 120
TfiI GAWTC 2 cut(s) 14, 129
Tru1I TTAA 2 cut(s) 152, 219
Tru9I TTAA 2 cut(s) 152, 219
TspDTI ATGAA 5 cut(s) 152, 282, 290, 320, 460
TspGWI ACGGA 4 cut(s) 26, 255, 408, 584
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 3 cut(s) 103, 146, 466
XmiI GTMKAC 2 cut(s) 204, 459
XmnI GAANNNNTTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.