Rh2DG031400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003966
Physical Location & Seq
Forward (+)
1929798 .. 1931731
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG031400.1

Sequence Viewer

Length: 762 bp
ATGAGTCTTGAGGAATCCAAGAAAACCGTTGTTTCAGTCGGGCCGTTTGGAGAAAATAAGCGAGTAATACCCTTTAATGACGGAGTACACTCAGCAGTGAAAGGTTTGGAGATGGTCTATTTGAAAGGTGAAAGGGGACATATTCTCAACGTCCGGTTTGAATATGAAGACGACGGAATCTCAGTTTGGGGAGACAGGCATGGTACAAGTATCATTTTGGATGTCGTAATGACAGGGCTGCTCGGAACCGACATCAGAAGAGAATGCATTAGTTTCAATTATCCAGACGAATTTTTGACTTCAGTTGATGGAAATTATGAAGCAAACTTGTCGGGGTCCTGGCTATCCTCACTTACTTTTAACACTAACAGAAAAACTTACGGACCCTTTGGATCGACTCAGAGCCGCTATTTCTCAATTCATGTGCCTGGAAGTAAGATTGTTGGTTTTCATGGCAGATCACACAGGTGGTGGAGTGGCAGTTTTGACATAGGAGCATACCTAAAGCCTATTGATCAACAAAGTGAATATGCATCTTCAACAGCACTGATGCTTTATCCATCAGAGCCTCCATATCGACATGGATATCCTTCTCAAACCAAGCTCAATAAAGATGACAGACCTCAAAACCAGAAACATTACGCAGTTTCAAATATTCGAGTTAGCAGAAATGAGGGAGACCACAACGGAGCTTTCTATTTGGGAGACAGGTATAAATATACGAACTATTATATCGAAAAGGCAGACATAGCGCACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

253

Amino Acids

28.73

Weight (kDa)

7.16

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 13 - 155 4.8e-24 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 406
AclWI GGATC 1 cut(s) 400
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 87, 205
AgsI TTSAA 5 cut(s) 124, 161, 277, 540, 651
AjnI CCWGG 2 cut(s) 338, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AleI CACNNNNGTG 1 cut(s) 466
AluBI AGCT 2 cut(s) 604, 692
AluI AGCT 2 cut(s) 604, 692
Alw26I GTCTC 3 cut(s) 186, 672, 699
AlwI GGATC 1 cut(s) 400
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 754
AspS9I GGNCC 3 cut(s) 41, 336, 383
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 336, 383
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 225
BccI CCATC 3 cut(s) 106, 302, 568
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 2 cut(s) 340, 429
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 3 cut(s) 186, 672, 699
BisI GCNGC 2 cut(s) 239, 406
BlsI GCNGC 2 cut(s) 240, 407
Bme1390I CCNGG 2 cut(s) 340, 429
Bme18I GGWCC 2 cut(s) 336, 383
BmgT120I GGNCC 3 cut(s) 41, 336, 383
BmiI GGNNCC 3 cut(s) 247, 337, 385
BmrFI CCNGG 2 cut(s) 340, 429
BmsI GCATC 2 cut(s) 540, 542
BpiI GAAGAC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
BseBI CCWGG 2 cut(s) 340, 429
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 105, 195, 413
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 3 cut(s) 186, 672, 699
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 672
Bsp143I GATC 3 cut(s) 392, 458, 514
BspACI CCGC 1 cut(s) 406
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 3 cut(s) 104, 194, 412
BspLI GGNNCC 3 cut(s) 247, 337, 385
BspPI GGATC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 672
BssMI GATC 3 cut(s) 392, 458, 514
Bst2UI CCWGG 2 cut(s) 340, 429
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 91, 181, 399
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 754
BstKTI GATC 3 cut(s) 395, 461, 517
BstMAI GTCTC 3 cut(s) 186, 672, 699
BstMBI GATC 3 cut(s) 392, 458, 514
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNI CCWGG 2 cut(s) 340, 429
BstSCI CCNGG 2 cut(s) 338, 427
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 545
CfoI GCGC 1 cut(s) 754
Cfr13I GGNCC 3 cut(s) 41, 336, 383
Csp6I GTAC 2 cut(s) 86, 204
CviAII CATG 4 cut(s) 200, 422, 452, 581
CviJI RGCY 8 cut(s) 43, 238, 343, 405, 508, 568, 604, 692
CviKI_1 RGCY 8 cut(s) 43, 238, 343, 405, 508, 568, 604, 692
CviQI GTAC 2 cut(s) 86, 204
DdeI CTNAG 3 cut(s) 91, 181, 399
DpnI GATC 3 cut(s) 394, 460, 516
DpnII GATC 3 cut(s) 392, 458, 514
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 672
Eco32I GATATC 1 cut(s) 587
Eco47I GGWCC 2 cut(s) 336, 383
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 338, 427
EcoRV GATATC 1 cut(s) 587
EcoT22I ATGCAT 2 cut(s) 269, 535
FaeI CATG 4 cut(s) 203, 425, 455, 584
FaqI GGGAC 1 cut(s) 150
FatI CATG 4 cut(s) 199, 421, 451, 580
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 239, 406
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 239, 406
GlaI GCGC 1 cut(s) 753
GluI GCNGC 2 cut(s) 239, 406
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 154
HhaI GCGC 1 cut(s) 754
Hin1II CATG 4 cut(s) 203, 425, 455, 584
Hin6I GCGC 1 cut(s) 752
HinP1I GCGC 1 cut(s) 752
HinfI GANTC 4 cut(s) 4, 14, 177, 397
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 245, 257, 402, 565
Hpy188III TCNNGA 2 cut(s) 8, 284
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 600
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 267, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 3 cut(s) 91, 181, 399
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 203, 425, 455, 584
HspAI GCGC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 392, 458, 514
LmnI GCTCC 2 cut(s) 494, 689
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 2 cut(s) 540, 542
MaeII ACGT 1 cut(s) 150
MalI GATC 3 cut(s) 394, 460, 516
MboI GATC 3 cut(s) 392, 458, 514
MboII GAAGA 3 cut(s) 179, 270, 528
MluCI AATT 4 cut(s) 277, 290, 313, 417
MlyI GAGTC 2 cut(s) 13, 391
MnlI CCTC 5 cut(s) 4, 358, 579, 633, 667
Mph1103I ATGCAT 2 cut(s) 269, 535
MseI TTAA 2 cut(s) 75, 360
MslI CAYNNNNRTG 1 cut(s) 466
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 340, 429
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 340, 429
MwoI GCNNNNNNNGC 1 cut(s) 749
NdeII GATC 3 cut(s) 392, 458, 514
NlaIII CATG 4 cut(s) 203, 425, 455, 584
NlaIV GGNNCC 3 cut(s) 247, 337, 385
NsiI ATGCAT 2 cut(s) 269, 535
OliI CACNNNNGTG 1 cut(s) 466
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 14, 177
PkrI GCNGC 2 cut(s) 240, 407
PleI GAGTC 2 cut(s) 12, 391
PpsI GAGTC 2 cut(s) 12, 391
PpuMI RGGWCCY 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 338, 427
PspGI CCWGG 2 cut(s) 338, 427
PspN4I GGNNCC 3 cut(s) 247, 337, 385
PspPI GGNCC 3 cut(s) 41, 336, 383
PspPPI RGGWCCY 1 cut(s) 336
RsaI GTAC 2 cut(s) 87, 205
RsaNI GTAC 2 cut(s) 86, 204
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 2 cut(s) 75, 360
SatI GCNGC 2 cut(s) 239, 406
Sau3AI GATC 3 cut(s) 392, 458, 514
Sau96I GGNCC 3 cut(s) 41, 336, 383
SchI GAGTC 2 cut(s) 13, 391
ScrFI CCNGG 2 cut(s) 340, 429
SetI ASST 9 cut(s) 106, 130, 153, 470, 504, 606, 625, 694, 713
SfaNI GCATC 2 cut(s) 540, 542
SinI GGWCC 2 cut(s) 336, 383
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 4 cut(s) 277, 290, 313, 417
SsiI CCGC 1 cut(s) 406
SspI AATATT 1 cut(s) 655
StyD4I CCNGG 2 cut(s) 338, 427
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 395, 577, 658, 735
TasI AATT 4 cut(s) 277, 290, 313, 417
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 2 cut(s) 14, 177
Tru1I TTAA 2 cut(s) 75, 360
Tru9I TTAA 2 cut(s) 75, 360
TscAI CASTG 2 cut(s) 102, 552
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 180, 333, 410, 440
TspGWI ACGGA 4 cut(s) 96, 189, 396, 702
TspRI CASTG 2 cut(s) 102, 552
VpaK11BI GGWCC 2 cut(s) 336, 383
XapI RAATTY 1 cut(s) 290
Zsp2I ATGCAT 2 cut(s) 269, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.