Rroxscaffold_5G00366530

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003966
Physical Location & Seq
Forward (+)
48448748 .. 48450092
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366530.1

Sequence Viewer

Length: 453 bp
ATGTTCAATTATCCAGACGAATTTTTGACTTCAGTTCATGGGTATTGTCAAGAAGACTGGACCGGGTCCTTTGTCACCTCGCTTACTTTTAAGACCAACAAAAAAACTTACGGACCCTTTGGGTCGACTCAATATCGCAACCCGAGAGACTGTTTTACAATTCATGTGCCTGGAAGTAAGATAGTTGGTATTCATGGCAGAACAAACAACAAGTGGTTGGCTGCTGGTATTGCTTCAATAGGAGCATACCTAAAGCCTCATGATCAACAAATTGAATATCCTCCATCAACAACACTGAAACAAGCAGAATATCCTTCGCAAACCAAGCTCAAGAAAGATGACAGACCCCAATACCAGAAACATTATACAATTCAAGATATTGGAGTTAACGGAAACCAGGGAAACCACAACGGAGCTTTCTATTTGGGTGACACGTATATCGTCTATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

150

Amino Acids

17.05

Weight (kDa)

8.77

Isoelectric Point (pI)

20.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 2 - 82 1.3e-16 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 4 cut(s) 7, 237, 275, 374
AjnI CCWGG 2 cut(s) 169, 396
AluBI AGCT 2 cut(s) 328, 416
AluI AGCT 2 cut(s) 328, 416
Alw26I GTCTC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 60, 66, 113
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 67, 440
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 3 cut(s) 60, 66, 113
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 171, 398
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 141
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 3 cut(s) 64, 171, 398
Bme18I GGWCC 3 cut(s) 60, 66, 113
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 60, 66, 113
BmiI GGNNCC 2 cut(s) 67, 115
BmrFI CCNGG 3 cut(s) 64, 171, 398
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 2 cut(s) 171, 398
BseDI CCNNGG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 142
Bsp143I GATC 1 cut(s) 262
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 67, 115
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 2 cut(s) 171, 398
Bst4CI ACNGT 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 435
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 230, 325
BstNI CCWGG 2 cut(s) 171, 398
BstSCI CCNGG 3 cut(s) 62, 169, 396
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 293
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 3 cut(s) 60, 66, 113
CviAII CATG 4 cut(s) 38, 164, 194, 260
CviJI RGCY 4 cut(s) 221, 256, 328, 416
CviKI_1 RGCY 4 cut(s) 221, 256, 328, 416
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 60, 66, 113
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 169, 396
FaeI CATG 4 cut(s) 41, 167, 197, 263
FaiI YATR 8 cut(s) 39, 165, 195, 247, 261, 366, 438, 447
FatI CATG 4 cut(s) 37, 163, 193, 259
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
HapII CCGG 1 cut(s) 63
Hin1II CATG 4 cut(s) 41, 167, 197, 263
HincII GTYRAC 2 cut(s) 126, 388
HindII GTYRAC 2 cut(s) 126, 388
HinfI GANTC 1 cut(s) 127
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 1 cut(s) 63
HphI GGTGA 2 cut(s) 67, 440
Hpy166II GTNNAC 2 cut(s) 126, 388
Hpy188III TCNNGA 5 cut(s) 14, 50, 260, 331, 374
Hpy8I GTNNAC 2 cut(s) 126, 388
HpyAV CCTTC 1 cut(s) 324
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 325
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 4 cut(s) 41, 167, 197, 263
Ksp22I TGATCA 1 cut(s) 262
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 242, 413
LpnPI CCDG 9 cut(s) 27, 43, 76, 156, 183, 210, 368, 383, 410
Lsp1109I GCAGC 1 cut(s) 208
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 2 cut(s) 73, 428
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 65
MluCI AATT 5 cut(s) 7, 20, 159, 270, 369
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 3 cut(s) 88, 267, 291
MseI TTAA 2 cut(s) 90, 387
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 64, 171, 398
MvaI CCWGG 2 cut(s) 171, 398
MwoI GCNNNNNNNGC 2 cut(s) 230, 325
NciI CCSGG 1 cut(s) 64
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 41, 167, 197, 263
NlaIV GGNNCC 2 cut(s) 67, 115
NmuCI GTSAC 2 cut(s) 73, 428
PagI TCATGA 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 435
PpuMI RGGWCCY 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 169, 396
PspGI CCWGG 2 cut(s) 169, 396
PspN4I GGNNCC 2 cut(s) 67, 115
PspPI GGNCC 3 cut(s) 60, 66, 113
PspPPI RGGWCCY 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 64
SalI GTCGAC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 90, 387
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 3 cut(s) 60, 66, 113
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 3 cut(s) 64, 171, 398
SetI ASST 5 cut(s) 80, 252, 330, 418, 437
SinI GGWCC 3 cut(s) 60, 66, 113
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 5 cut(s) 7, 20, 159, 270, 369
StyD4I CCNGG 3 cut(s) 62, 169, 396
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 437
TaqI TCGA 1 cut(s) 125
TasI AATT 5 cut(s) 7, 20, 159, 270, 369
Tru1I TTAA 2 cut(s) 90, 387
Tru9I TTAA 2 cut(s) 90, 387
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 2 cut(s) 73, 428
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 2 cut(s) 73, 428
TspDTI ATGAA 3 cut(s) 26, 152, 182
TspGWI ACGGA 3 cut(s) 126, 405, 426
TspRI CASTG 1 cut(s) 300
Tth111I GACNNNGTC 1 cut(s) 64
VpaK11BI GGWCC 3 cut(s) 60, 66, 113
XapI RAATTY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.