RLG00000008814

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004259
Physical Location & Seq
Reverse (-)
39791698 .. 39794876
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008814

Sequence Viewer

Length: 462 bp
ATGGCGTCCGTTGAGGATAAGGCATCTGACGGATTCACCGGCGTTGGAGAATTGGGCGAGGATGATAAATGTCTTGTTTGGATATGGTGTCCTGCATGTGGTCAGATCCGGCTAGTTGTAAGGGGACCTAAGGCAGAAGAATGTCTGGATATGGGAGACATCACGACACTTACTCGTTTGCATTTCAAGGGTTCCCTTACTGCATGGGTTATATATGGGTTGACAAGATGGCAGGGGAAGGCTTTGAGTGATGGGAAGACTAGCAAACTACAGGACTATCCAAAACCAACAATGTTTGGTCCTAATTGTCAAGTATACGATCGCGTCATGTCTTCCTTTACTTCACAATCTGCAACAAATCCCGGCAGGCCTTATTGGTTCTGCTATGGGTACCAGGTGAGTGATATTACTCCTGTTACAAAAGTTACTCCTATGGGTAACTTATTTTTCATTGGCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.95

Weight (kDa)

6.55

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 390
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 324
AclWI GGATC 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 368
Asp718I GGTACC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 125, 299
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 28, 409
AvaII GGWCC 2 cut(s) 125, 299
AxyI CCTNAGG 1 cut(s) 129
BanI GGYRCC 1 cut(s) 390
BbsI GAAGAC 2 cut(s) 263, 324
BccI CCATC 2 cut(s) 222, 245
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 113, 261
BfmI CTRYAG 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 363, 395
Bme18I GGWCC 2 cut(s) 125, 299
BmgT120I GGNCC 2 cut(s) 125, 299
BmiI GGNNCC 3 cut(s) 126, 193, 392
BmrFI CCNGG 2 cut(s) 363, 395
BmsI GCATC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 263, 324
BpuMI CCSGG 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 38
Bse21I CCTNAGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 370
BshNI GGYRCC 1 cut(s) 390
BsiEI CGRYCG 1 cut(s) 322
BsiSI CCGG 3 cut(s) 39, 109, 363
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 1 cut(s) 370
Bsp143I GATC 2 cut(s) 105, 319
BspANI GGCC 1 cut(s) 370
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 126, 193, 392
BspPI GGATC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssMI GATC 2 cut(s) 105, 319
BssNAI GTATAC 1 cut(s) 316
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 2 cut(s) 108, 322
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 105, 319
BstMCI CGRYCG 1 cut(s) 322
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 361, 393
BstSFI CTRYAG 1 cut(s) 269
BstUI CGCG 1 cut(s) 324
BstV2I GAAGAC 2 cut(s) 263, 324
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 125, 299
CseI GACGC 1 cut(s) 313
CsiI ACCWGGT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 96, 204, 328
CviJI RGCY 3 cut(s) 112, 242, 370
CviKI_1 RGCY 3 cut(s) 112, 242, 370
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 107, 321
DpnII GATC 2 cut(s) 105, 319
Eco147I AGGCCT 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 125, 299
Eco81I CCTNAGG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 393
FaeI CATG 3 cut(s) 99, 207, 331
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 95, 203, 327
FblI GTMKAC 1 cut(s) 315
FokI GGATG 1 cut(s) 74
FspBI CTAG 2 cut(s) 113, 261
HaeIII GGCC 1 cut(s) 370
HapII CCGG 3 cut(s) 39, 109, 363
HgaI GACGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 99, 207, 331
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 1 cut(s) 33
HpaII CCGG 3 cut(s) 39, 109, 363
HphI GGTGA 2 cut(s) 28, 409
Hpy166II GTNNAC 2 cut(s) 222, 316
Hpy188I TCNGA 2 cut(s) 28, 105
Hpy188III TCNNGA 2 cut(s) 146, 163
Hpy8I GTNNAC 2 cut(s) 222, 316
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 95, 181, 203, 353
HpyF3I CTNAG 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 99, 207, 331
KpnI GGTACC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 105, 319
LweI GCATC 1 cut(s) 32
MabI ACCWGGT 1 cut(s) 393
MaeI CTAG 2 cut(s) 113, 261
MaeIII GTNAC 3 cut(s) 415, 424, 437
MalI GATC 2 cut(s) 107, 321
MboI GATC 2 cut(s) 105, 319
MboII GAAGA 3 cut(s) 149, 268, 324
MflI RGATCY 1 cut(s) 105
MluCI AATT 2 cut(s) 50, 304
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 2 cut(s) 7, 52
MseI TTAA 1 cut(s) 460
MspI CCGG 3 cut(s) 39, 109, 363
MspR9I CCNGG 2 cut(s) 363, 395
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 324
NciI CCSGG 1 cut(s) 363
NdeII GATC 2 cut(s) 105, 319
NlaIII CATG 3 cut(s) 99, 207, 331
NlaIV GGNNCC 3 cut(s) 126, 193, 392
NspI RCATGY 1 cut(s) 99
PceI AGGCCT 1 cut(s) 370
PfeI GAWTC 1 cut(s) 33
Ple19I CGATCG 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 126, 193, 392
PspPI GGNCC 2 cut(s) 125, 299
PspPPI RGGWCCY 1 cut(s) 125
PsuI RGATCY 1 cut(s) 105
PvuI CGATCG 1 cut(s) 322
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 460
Sau3AI GATC 2 cut(s) 105, 319
Sau96I GGNCC 2 cut(s) 125, 299
ScrFI CCNGG 2 cut(s) 363, 395
SetI ASST 2 cut(s) 130, 399
SexAI ACCWGGT 1 cut(s) 393
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 269
SgrAI CRCCGGYG 1 cut(s) 38
SinI GGWCC 2 cut(s) 125, 299
Sse9I AATT 2 cut(s) 50, 304
SseBI AGGCCT 1 cut(s) 370
SspMI CTAG 2 cut(s) 113, 261
StuI AGGCCT 1 cut(s) 370
StyD4I CCNGG 2 cut(s) 361, 393
TasI AATT 2 cut(s) 50, 304
TfiI GAWTC 1 cut(s) 33
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 439
TspGWI ACGGA 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 125, 299
XceI RCATGY 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 113, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.