Rh3DG305000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004259
Physical Location & Seq
Forward (+)
32356469 .. 32357446
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG305000.1

Sequence Viewer

Length: 429 bp
ATGGGTCGTCGTCATGATGGATACTTAACATTCTGTCCAAATCACATAAACAGGTTGAATACTGCGGGAGCATGCGGTGAGGATGTCAACTGTCCTATTCAAAGGTGGTGTCACCTATGCGGCCAGGTCCAGCAGGTAGTTAAAGGACCATGCTATGAAGAATGCCCACCTTTTGATGGCAAGCACCCTCCCAAGGAAGGGCCGGACGAAAGTCCCCGATGCCCTCTCTGTGAAGGGAACATGACGGTGATGCAGCATTGGGTGCCTGAAATCAAGAGGCTGAGGCCGTACTGGAGGTGTGCCGGTACCAACGGTCCAATCCACAGGCCACAATTCATATGGGGAGATGAGTGCAAAATACATTTTGCGGGATTTGATTCCTTCACTCAATATGAAGTTCCGGCACAGTCACCACAGGAAGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

6.36

Isoelectric Point (pI)

63.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 2 cut(s) 262, 305
AciI CCGC 4 cut(s) 65, 75, 120, 368
AcoI YGGCCR 1 cut(s) 121
AfaI GTAC 2 cut(s) 290, 307
AfiI CCNNNNNNNGG 5 cut(s) 176, 193, 197, 198, 419
AgsI TTSAA 2 cut(s) 58, 101
AjnI CCWGG 1 cut(s) 123
AoxI GGCC 4 cut(s) 121, 200, 284, 326
ApeKI GCWGC 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
Asp718I GGTACC 1 cut(s) 305
AspS9I GGNCC 4 cut(s) 127, 146, 200, 314
AsuHPI GGTGA 4 cut(s) 89, 104, 259, 402
AvaII GGWCC 3 cut(s) 127, 146, 314
BanI GGYRCC 2 cut(s) 262, 305
BbvCI CCTCAGC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 11, 170
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 1 cut(s) 14
BisI GCNGC 2 cut(s) 121, 254
BlsI GCNGC 2 cut(s) 122, 255
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 3 cut(s) 127, 146, 314
BmgT120I GGNCC 4 cut(s) 127, 146, 200, 314
BmiI GGNNCC 2 cut(s) 264, 307
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 209, 240
BoxI GACNNNNGTC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 313
Bpu10I CCTNAGC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 193, 197, 198, 419
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 5 cut(s) 176, 193, 197, 198, 419
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 4 cut(s) 123, 202, 286, 328
BshNI GGYRCC 2 cut(s) 262, 305
BsiSI CCGG 3 cut(s) 203, 303, 401
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 5 cut(s) 176, 193, 197, 198, 419
BsmFI GGGAC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 4 cut(s) 123, 202, 286, 328
BspACI CCGC 4 cut(s) 65, 75, 120, 368
BspANI GGCC 4 cut(s) 123, 202, 286, 328
BspCNI CTCAG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 264, 307
BspMI ACCTGC 1 cut(s) 124
BspT107I GGYRCC 2 cut(s) 262, 305
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 4 cut(s) 92, 247, 314, 408
BstAPI GCANNNNNTGC 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 73, 182
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 75
BstPAI GACNNNNGTC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 265
BsuI GTATCC 1 cut(s) 14
BsuRI GGCC 4 cut(s) 123, 202, 286, 328
BtsCI GGATG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 73, 182
CciI TCATGA 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 4 cut(s) 127, 146, 200, 314
Csp6I GTAC 2 cut(s) 289, 306
CviAII CATG 4 cut(s) 14, 72, 150, 241
CviJI RGCY 5 cut(s) 123, 202, 280, 286, 328
CviKI_1 RGCY 5 cut(s) 123, 202, 280, 286, 328
CviQI GTAC 2 cut(s) 289, 306
DdeI CTNAG 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 3 cut(s) 127, 146, 314
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 17, 75, 153, 244
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 13, 71, 149, 240
FauI CCCGC 2 cut(s) 58, 361
FauNDI CATATG 1 cut(s) 338
Fnu4HI GCNGC 2 cut(s) 121, 254
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 121, 254
GluI GCNGC 2 cut(s) 121, 254
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 4 cut(s) 123, 202, 286, 328
HapII CCGG 3 cut(s) 203, 303, 401
Hin1II CATG 4 cut(s) 17, 75, 153, 244
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 377
HpaII CCGG 3 cut(s) 203, 303, 401
HphI GGTGA 4 cut(s) 89, 104, 259, 402
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 14, 274
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 4 cut(s) 191, 227, 391, 413
HpyCH4III ACNGT 4 cut(s) 92, 247, 314, 408
HpyCH4V TGCA 3 cut(s) 253, 354, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 4 cut(s) 17, 75, 153, 244
KpnI GGTACC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 2 cut(s) 209, 240
MaeIII GTNAC 2 cut(s) 110, 408
MboII GAAGA 1 cut(s) 170
MluCI AATT 1 cut(s) 332
MnlI CCTC 6 cut(s) 73, 198, 234, 270, 276, 288
MseI TTAA 2 cut(s) 26, 141
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 3 cut(s) 203, 303, 401
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeI CATATG 1 cut(s) 338
NlaIII CATG 4 cut(s) 17, 75, 153, 244
NlaIV GGNNCC 2 cut(s) 264, 307
NmuCI GTSAC 2 cut(s) 110, 408
NspI RCATGY 1 cut(s) 75
PaeI GCATGC 1 cut(s) 75
PagI TCATGA 1 cut(s) 13
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 122, 255
PshAI GACNNNNGTC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 264, 307
PspPI GGNCC 4 cut(s) 127, 146, 200, 314
RsaI GTAC 2 cut(s) 290, 307
RsaNI GTAC 2 cut(s) 289, 306
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 26, 141
SatI GCNGC 2 cut(s) 121, 254
Sau96I GGNCC 4 cut(s) 127, 146, 200, 314
ScrFI CCNGG 1 cut(s) 125
SetI ASST 8 cut(s) 56, 107, 117, 129, 138, 172, 299, 424
SfaNI GCATC 2 cut(s) 209, 240
SinI GGWCC 3 cut(s) 127, 146, 314
SmiMI CAYNNNNRTG 1 cut(s) 245
SphI GCATGC 1 cut(s) 75
Sse9I AATT 1 cut(s) 332
SsiI CCGC 4 cut(s) 65, 75, 120, 368
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 4 cut(s) 92, 247, 314, 408
TasI AATT 1 cut(s) 332
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 26, 141
Tru9I TTAA 2 cut(s) 26, 141
TseFI GTSAC 2 cut(s) 110, 408
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 2 cut(s) 110, 408
TspDTI ATGAA 3 cut(s) 171, 325, 408
VpaK11BI GGWCC 3 cut(s) 127, 146, 314
XceI RCATGY 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.