Rh6CG205400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004259
Physical Location & Seq
Forward (+)
34243802 .. 34245369
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG205400.1

Sequence Viewer

Length: 771 bp
ATGTCTGTCCCATATAATGTGTGCTGCTCAGCCCCTTGGTCCCATTCCCCAACCAACTGCTGTCGAGTAAAAGGAATTGCAGATTCAACATCGTCGAGGATGGTGTCCGTTGAGGATAAGGCATCTGACGGACTCAACGGCGCTGGAGAATTGGGCGAGGATGCTAAATGTCCTCTTCGGAGATGGTGTCCTGCATGCGGTCAGATCCGGCGAGTTGTAAGGGGACCTAAGGCAGAAGAATGCCCGGATATGGGAGGTGAAAAACCTACCAAATCAATACCAGACGAGAGTCCTAGATGCCCACTTTGTGAAGGAAACACAACAATGATGCACGATTGGGTTCATGAGATACTAAGCGAAAGGCCTTACTGGAGGTGTTGCAGGGGAAATGGGTTCCCTTATTGCATGGGTTATATATGGGTTGACGAGATGGCGGGGGAAGGCTCTGAGTGTGATGAAGAGGATGGGAGGACTACCAAACTGCAGGAGTATCCAAAACCAACAATGTTTGGTCCTAATTGCCAAGTATGCGGTCGCATAATGTCGTCATTTATTTCACAATCTGCAACAAATCCCGGAAGGCCTTATTGGTTCTGCTATGGGTACCCGGCTCCTACAATCCACAAGCCGGCTTTCATATGGGTGGATGAATGCAAGATACATTTTGCGGGATTCGATGGCGACAGTGACTTTGAAGAACCAGAACATACACCTTCAGCCGGTGGGCTGTCAGACAGCGAACCTTCGTCGTTTGAGTTATATTCCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.36

Weight (kDa)

4.91

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 603
AciI CCGC 4 cut(s) 198, 434, 531, 668
AclWI GGATC 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 699
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 5 cut(s) 197, 250, 251, 628, 719
AgsI TTSAA 2 cut(s) 87, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AlwI GGATC 1 cut(s) 199
AoxI GGCC 2 cut(s) 362, 581
ApeKI GCWGC 1 cut(s) 24
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
Asp718I GGTACC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 3 cut(s) 39, 224, 512
AsuC2I CCSGG 3 cut(s) 245, 576, 608
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 3 cut(s) 39, 224, 512
AxyI CCTNAGG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 11
BccI CCATC 5 cut(s) 94, 177, 424, 458, 671
BceAI ACGGC 1 cut(s) 154
BciVI GTATCC 1 cut(s) 501
BcnI CCSGG 3 cut(s) 245, 576, 608
BfaI CTAG 2 cut(s) 294, 769
BfmI CTRYAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 144
BfuI GTATCC 1 cut(s) 501
BisI GCNGC 1 cut(s) 25
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 3 cut(s) 245, 576, 608
Bme18I GGWCC 3 cut(s) 39, 224, 512
BmgT120I GGNCC 3 cut(s) 39, 224, 512
BmiI GGNNCC 5 cut(s) 41, 225, 395, 605, 612
BmrFI CCNGG 3 cut(s) 245, 576, 608
BmsI GCATC 4 cut(s) 131, 151, 287, 318
BoxI GACNNNNGTC 1 cut(s) 288
BpmI CTGGAG 2 cut(s) 165, 391
Bpu1102I GCTNAGC 1 cut(s) 28
BpuMI CCSGG 3 cut(s) 245, 576, 608
BsaJI CCNNGG 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 250, 251, 628, 719
Bse118I RCCGGY 2 cut(s) 628, 719
Bse1I ACTGG 1 cut(s) 374
Bse21I CCTNAGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 4 cut(s) 105, 166, 469, 652
BseLI CCNNNNNNNGG 5 cut(s) 197, 250, 251, 628, 719
BseMII CTCAG 2 cut(s) 42, 438
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 2 cut(s) 364, 583
BshNI GGYRCC 1 cut(s) 603
BsiEI CGRYCG 1 cut(s) 535
BsiSI CCGG 6 cut(s) 208, 245, 576, 608, 629, 720
BslFI GGGAC 2 cut(s) 25, 237
BslI CCNNNNNNNGG 5 cut(s) 197, 250, 251, 628, 719
BsmFI GGGAC 2 cut(s) 25, 237
BsmI GAATGC 2 cut(s) 245, 656
BsnI GGCC 2 cut(s) 364, 583
Bsp143I GATC 1 cut(s) 204
Bsp1720I GCTNAGC 1 cut(s) 28
BspACI CCGC 4 cut(s) 198, 434, 531, 668
BspANI GGCC 2 cut(s) 364, 583
BspCNI CTCAG 2 cut(s) 41, 439
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 5 cut(s) 41, 225, 395, 605, 612
BspMAI CTGCAG 1 cut(s) 486
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 603
BsrFI RCCGGY 2 cut(s) 628, 719
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 2 cut(s) 628, 719
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 2 cut(s) 180, 453
BstC8I GCNNGC 2 cut(s) 196, 630
BstDEI CTNAG 4 cut(s) 28, 228, 353, 447
BstF5I GGATG 4 cut(s) 105, 166, 469, 652
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 198
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 243, 574, 606
BstSFI CTRYAG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 2 cut(s) 364, 583
BtsCI GGATG 4 cut(s) 105, 166, 469, 652
BtsIMutI CAGTG 1 cut(s) 691
Cac8I GCNNGC 2 cut(s) 196, 630
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 2 cut(s) 628, 719
Cfr13I GGNCC 3 cut(s) 39, 224, 512
Csp6I GTAC 1 cut(s) 604
CviAII CATG 3 cut(s) 195, 344, 406
CviJI RGCY 9 cut(s) 32, 364, 444, 583, 611, 628, 632, 719, 727
CviKI_1 RGCY 9 cut(s) 32, 364, 444, 583, 611, 628, 632, 719, 727
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 4 cut(s) 28, 228, 353, 447
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraIII CACNNNGTG 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 180, 453
EarI CTCTTC 2 cut(s) 180, 453
Eco130I CCWWGG 1 cut(s) 35
Eco147I AGGCCT 2 cut(s) 364, 583
Eco47I GGWCC 3 cut(s) 39, 224, 512
Eco57I CTGAAG 1 cut(s) 699
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 3 cut(s) 198, 347, 409
FaqI GGGAC 2 cut(s) 25, 237
FatI CATG 3 cut(s) 194, 343, 405
FauI CCCGC 2 cut(s) 427, 661
FauNDI CATATG 1 cut(s) 638
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 4 cut(s) 112, 173, 476, 659
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 294, 769
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 25
GsuI CTGGAG 2 cut(s) 165, 391
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 364, 583
HapII CCGG 6 cut(s) 208, 245, 576, 608, 629, 720
HhaI GCGC 1 cut(s) 143
Hin1II CATG 3 cut(s) 198, 347, 409
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 4 cut(s) 83, 132, 289, 672
HpaII CCGG 6 cut(s) 208, 245, 576, 608, 629, 720
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 5 cut(s) 127, 180, 204, 448, 733
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 2 cut(s) 97, 751
HpyAV CCTTC 5 cut(s) 305, 434, 573, 723, 753
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4V TGCA 8 cut(s) 80, 194, 331, 381, 405, 484, 566, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 528
HpyF3I CTNAG 4 cut(s) 28, 228, 353, 447
Hsp92II CATG 3 cut(s) 198, 347, 409
HspAI GCGC 1 cut(s) 141
KpnI GGTACC 1 cut(s) 607
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 1 cut(s) 11
LweI GCATC 4 cut(s) 131, 151, 287, 318
MaeI CTAG 2 cut(s) 294, 769
MaeIII GTNAC 1 cut(s) 686
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 4 cut(s) 167, 248, 470, 707
MflI RGATCY 1 cut(s) 204
MluCI AATT 3 cut(s) 75, 149, 517
MlyI GAGTC 2 cut(s) 126, 298
MnlI CCTC 8 cut(s) 90, 106, 151, 183, 248, 366, 454, 462
MroNI GCCGGC 1 cut(s) 628
MslI CAYNNNNRTG 2 cut(s) 323, 641
MspI CCGG 6 cut(s) 208, 245, 576, 608, 629, 720
MspR9I CCNGG 3 cut(s) 245, 576, 608
Mva1269I GAATGC 2 cut(s) 245, 656
MwoI GCNNNNNNNGC 1 cut(s) 528
NaeI GCCGGC 1 cut(s) 630
NciI CCSGG 3 cut(s) 245, 576, 608
NdeI CATATG 1 cut(s) 638
NdeII GATC 1 cut(s) 204
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 3 cut(s) 198, 347, 409
NlaIV GGNNCC 5 cut(s) 41, 225, 395, 605, 612
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 1 cut(s) 198
PaeI GCATGC 1 cut(s) 198
PagI TCATGA 1 cut(s) 343
PceI AGGCCT 2 cut(s) 364, 583
PctI GAATGC 2 cut(s) 245, 656
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 2 cut(s) 83, 672
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 2 cut(s) 126, 297
PpsI GAGTC 2 cut(s) 126, 297
PpuMI RGGWCCY 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 5 cut(s) 41, 225, 395, 605, 612
PspPI GGNCC 3 cut(s) 39, 224, 512
PspPPI RGGWCCY 1 cut(s) 224
PstI CTGCAG 1 cut(s) 486
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
RseI CAYNNNNRTG 2 cut(s) 323, 641
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 3 cut(s) 39, 224, 512
SchI GAGTC 2 cut(s) 126, 298
ScrFI CCNGG 3 cut(s) 245, 576, 608
SetI ASST 6 cut(s) 229, 259, 268, 377, 715, 745
SfaNI GCATC 4 cut(s) 131, 151, 287, 318
SfcI CTRYAG 1 cut(s) 482
SinI GGWCC 3 cut(s) 39, 224, 512
SmiMI CAYNNNNRTG 2 cut(s) 323, 641
SphI GCATGC 1 cut(s) 198
Sse9I AATT 3 cut(s) 75, 149, 517
SseBI AGGCCT 2 cut(s) 364, 583
SsiI CCGC 4 cut(s) 198, 434, 531, 668
SspMI CTAG 2 cut(s) 294, 769
StuI AGGCCT 2 cut(s) 364, 583
StyD4I CCNGG 3 cut(s) 243, 574, 606
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 686
TaqI TCGA 3 cut(s) 64, 95, 675
TasI AATT 3 cut(s) 75, 149, 517
TfiI GAWTC 2 cut(s) 83, 672
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 4 cut(s) 332, 471, 625, 663
TspGWI ACGGA 2 cut(s) 97, 144
TspRI CASTG 1 cut(s) 691
VpaK11BI GGWCC 3 cut(s) 39, 224, 512
XceI RCATGY 1 cut(s) 198
XspI CTAG 2 cut(s) 294, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.