Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Forward (+)

24907914 .. 24909034

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCTATCCCATATAATGTGTGCTGCTCACCTCCTTTGTCCCATTCCCCAACCAACTGTTATCGAGCAAAAGGAATTGCAGATTCAACATCGTCGAAGATGCGTCCGTTGAGGATAAGTCATTTAAAGGAATTGGGTGAGGATGATAAATGTCCTGTTCGGAGATGGTGTCTTGCATGCGGTCGGATCCGGCGAGTTGTAAGGGGACCTAAGGTAGAAGAATGTCCAGATATGAGAAGTGAAAAATCTATCAAATCAATACCGTACAAGAGTCCTAGATGCCCACTTTGTGAAGGAAACGCAACCATGATGCACCATTGGGTTCATGAGATACTAAGCAAAAGCCTTACCGGAGGTGTTGCGGGGGAAATGATGGGAGGAGTAGCAAACTGCAAGAGTATCCAAAACCAACAATGTTTGGTCCCAATTGCCAAGTATGCAGCCGTGTCATGTCTTCCTTTATTTCACAATCTACAACAAATCCCGGCAGACGTTATTGGTTCTGCTATGGGTACCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.02

Weight (kDa)

9.16

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	512
AciI	CCGC	2 cut(s)	180, 362
AclWI	GGATC	2 cut(s)	181, 194
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	266, 514
AgsI	TTSAA	1 cut(s)	87
AlwI	GGATC	2 cut(s)	181, 194
ApeKI	GCWGC	2 cut(s)	24, 440
Asp718I	GGTACC	1 cut(s)	512
AspS9I	GGNCC	2 cut(s)	206, 421
AsuC2I	CCSGG	2 cut(s)	485, 517
AsuHPI	GGTGA	2 cut(s)	21, 149
AvaII	GGWCC	2 cut(s)	206, 421
AxyI	CCTNAGG	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	11, 452
BccI	CCATC	2 cut(s)	159, 367
BceAI	ACGGC	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	410
BcnI	CCSGG	2 cut(s)	485, 517
BfaI	CTAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	25, 441
BlsI	GCNGC	2 cut(s)	26, 442
Bme1390I	CCNGG	2 cut(s)	485, 517
Bme18I	GGWCC	2 cut(s)	206, 421
BmgT120I	GGNCC	2 cut(s)	206, 421
BmiI	GGNNCC	4 cut(s)	188, 207, 423, 514
BmrFI	CCNGG	2 cut(s)	485, 517
BmsI	GCATC	3 cut(s)	90, 269, 300
BpiI	GAAGAC	1 cut(s)	446
BpuMI	CCSGG	2 cut(s)	485, 517
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse21I	CCTNAGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	11, 452
Bsh1285I	CGRYCG	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	184
BsiSI	CCGG	4 cut(s)	190, 351, 485, 517
BslFI	GGGAC	3 cut(s)	25, 219, 407
BsmFI	GGGAC	3 cut(s)	25, 219, 407
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	180, 362
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	188, 207, 423, 514
BspPI	GGATC	2 cut(s)	181, 194
BspT107I	GGYRCC	1 cut(s)	512
BssMI	GATC	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	59, 264
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	210, 335
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	483, 515
BstV1I	GCAGC	2 cut(s)	11, 452
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	206, 421
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	265, 513
CviAII	CATG	4 cut(s)	177, 307, 326, 450
CviJI	RGCY	2 cut(s)	345, 443
CviKI_1	RGCY	2 cut(s)	345, 443
CviQI	GTAC	2 cut(s)	265, 513
DdeI	CTNAG	2 cut(s)	210, 335
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DraI	TTTAAA	1 cut(s)	126
DraIII	CACNNNGTG	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	206, 421
Eco81I	CCTNAGG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	206
FaeI	CATG	4 cut(s)	180, 310, 329, 453
FaiI	YATR	9 cut(s)	13, 15, 178, 233, 308, 327, 438, 451, 509
FaqI	GGGAC	3 cut(s)	25, 219, 407
FatI	CATG	4 cut(s)	176, 306, 325, 449
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	25, 441
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	25, 441
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	2 cut(s)	25, 441
HapII	CCGG	4 cut(s)	190, 351, 485, 517
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	4 cut(s)	180, 310, 329, 453
HinfI	GANTC	2 cut(s)	83, 271
HpaII	CCGG	4 cut(s)	190, 351, 485, 517
HphI	GGTGA	2 cut(s)	21, 149
Hpy188I	TCNGA	2 cut(s)	162, 186
Hpy188III	TCNNGA	2 cut(s)	227, 326
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	2 cut(s)	59, 264
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	5 cut(s)	80, 176, 313, 393, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	210, 335
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	4 cut(s)	180, 310, 329, 453
KpnI	GGTACC	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	186
LpnPI	CCDG	5 cut(s)	168, 203, 240, 364, 498
Lsp1109I	GCAGC	2 cut(s)	11, 452
LweI	GCATC	3 cut(s)	90, 269, 300
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	492
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	3 cut(s)	109, 230, 446
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	3 cut(s)	75, 131, 426
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	5 cut(s)	42, 105, 133, 347, 371
MseI	TTAA	1 cut(s)	125
MspI	CCGG	4 cut(s)	190, 351, 485, 517
MspR9I	CCNGG	2 cut(s)	485, 517
MunI	CAATTG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	2 cut(s)	485, 517
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	4 cut(s)	180, 310, 329, 453
NlaIV	GGNNCC	4 cut(s)	188, 207, 423, 514
NspI	RCATGY	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	180
PagI	TCATGA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	26, 442
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	188, 207, 423, 514
PspPI	GGNCC	2 cut(s)	206, 421
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	2 cut(s)	266, 514
RsaNI	GTAC	2 cut(s)	265, 513
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	25, 441
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	206, 421
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	485, 517
SetI	ASST	5 cut(s)	34, 211, 216, 358, 495
SfaNI	GCATC	3 cut(s)	90, 269, 300
SinI	GGWCC	2 cut(s)	206, 421
SphI	GCATGC	1 cut(s)	180
Sse9I	AATT	3 cut(s)	75, 131, 426
SsiI	CCGC	2 cut(s)	180, 362
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	2 cut(s)	483, 515
TaaI	ACNGT	2 cut(s)	59, 264
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	64, 95
TasI	AATT	3 cut(s)	75, 131, 426
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseI	GCWGC	2 cut(s)	24, 440
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	206, 421
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.