Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Reverse (-)

61589507 .. 61590683

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGACTCGGCTGGGAACATCAGAACTAGCGGTATGGGTCGTCGTCATGATGGACACTTAACATTCTGTCCAAATCACATAAACAGGTTGAATACTGCTGGAGCATGCGGTGAGGATGTCAACTGTCCTATTCAAAGGTGGTGTCACCTATGCGGCCAGGTCCAGCAGGTAGTTAAAGGACCACGCTCTGAAGAATGCCCACCTTTTGACGGCAAGCACCCTCCCAAGGAAGGGCCGGACGAAAGTCCCCGATGCCCTCTCTGTGAAGGGAACATGACGGTGATGCAGCATTGGGTGCCTGAAATCAAGAGGCTGAGGCCGTACTGGAGGTGTGCCGGTACCAACGGGTTCCCATATTGCAGGGGGTATAGATGGGTGGACGAGATGACCGTGGGATGCACCGAGCATAATGCAGGGGTGAGATATAATGTAGACATTGATGCACGTACGAACCTCACAATGTACGGTCCTAATTGTGAAGTGTGTGATGGCTTCATGATGTCGTTTATATCACGATCTGAATTGAATCCAGGCAGGCCTTATTGGTTCTGCTATGGTTACCCTGTCAGTAGAGACTTTACTTTGAAAACATATTCAAATCAATTCACTCCTCAGTGTGTATCTTTATCAGGGAATTGTATAACTAACTTGAATGTTTATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.12

Weight (kDa)

7.87

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	2 cut(s)	295, 338
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	3 cut(s)	30, 108, 153
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	4 cut(s)	323, 340, 448, 464
AfiI	CCNNNNNNNGG	4 cut(s)	209, 226, 230, 231
AgsI	TTSAA	6 cut(s)	91, 134, 526, 586, 597, 652
AjnI	CCWGG	2 cut(s)	156, 529
Alw26I	GTCTC	1 cut(s)	567
AoxI	GGCC	4 cut(s)	154, 233, 317, 536
ApeKI	GCWGC	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp718I	GGTACC	1 cut(s)	338
AspS9I	GGNCC	4 cut(s)	160, 179, 233, 467
AsuHPI	GGTGA	4 cut(s)	122, 137, 292, 430
AvaII	GGWCC	3 cut(s)	160, 179, 467
BanI	GGYRCC	2 cut(s)	295, 338
BbvCI	CCTCAGC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	3 cut(s)	44, 366, 482
BceAI	ACGGC	2 cut(s)	226, 304
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	2 cut(s)	158, 531
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	154, 287
BlsI	GCNGC	2 cut(s)	155, 288
Bme1390I	CCNGG	2 cut(s)	158, 531
Bme18I	GGWCC	3 cut(s)	160, 179, 467
BmgT120I	GGNCC	4 cut(s)	160, 179, 233, 467
BmiI	GGNNCC	3 cut(s)	297, 340, 350
BmrFI	CCNGG	2 cut(s)	158, 531
BmsI	GCATC	4 cut(s)	242, 273, 386, 430
BoxI	GACNNNNGTC	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	120, 346
Bpu10I	CCTNAGC	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	225, 390
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 226, 230, 231
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	158, 531
BseDI	CCNNGG	2 cut(s)	225, 390
BseGI	GGATG	2 cut(s)	121, 401
BseLI	CCNNNNNNNGG	4 cut(s)	209, 226, 230, 231
BseMII	CTCAG	2 cut(s)	305, 626
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	600
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	4 cut(s)	156, 235, 319, 538
BshNI	GGYRCC	2 cut(s)	295, 338
BsiSI	CCGG	2 cut(s)	236, 336
BsiWI	CGTACG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	4 cut(s)	209, 226, 230, 231
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	4 cut(s)	156, 235, 319, 538
Bsp143I	GATC	1 cut(s)	515
BspACI	CCGC	3 cut(s)	30, 108, 153
BspANI	GGCC	4 cut(s)	156, 235, 319, 538
BspCNI	CTCAG	2 cut(s)	306, 625
BspHI	TCATGA	2 cut(s)	46, 495
BspLI	GGNNCC	3 cut(s)	297, 340, 350
BspMI	ACCTGC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	295, 338
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	225, 390
BssMI	GATC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	158, 531
Bst4CI	ACNGT	4 cut(s)	125, 280, 391, 467
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	106, 215, 536
BstDEI	CTNAG	2 cut(s)	314, 612
BstDSI	CCRYGG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	2 cut(s)	121, 401
BstKTI	GATC	1 cut(s)	518
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	1 cut(s)	515
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	2 cut(s)	158, 531
BstNSI	RCATGY	1 cut(s)	108
BstPAI	GACNNNNGTC	1 cut(s)	243
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	156, 529
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	4 cut(s)	156, 235, 319, 538
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	121, 401
BtsIMutI	CAGTG	1 cut(s)	620
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	106, 215, 536
CciI	TCATGA	2 cut(s)	46, 495
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	4 cut(s)	160, 179, 233, 467
Csp6I	GTAC	4 cut(s)	322, 339, 447, 463
CviAII	CATG	4 cut(s)	47, 105, 274, 496
CviJI	RGCY	7 cut(s)	11, 156, 235, 313, 319, 492, 538
CviKI_1	RGCY	7 cut(s)	11, 156, 235, 313, 319, 492, 538
CviQI	GTAC	4 cut(s)	322, 339, 447, 463
DdeI	CTNAG	2 cut(s)	314, 612
DpnI	GATC	1 cut(s)	517
DpnII	GATC	1 cut(s)	515
EaeI	YGGCCR	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	160, 179, 467
Eco57I	CTGAAG	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	156, 529
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	50, 108, 277, 499
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	46, 104, 273, 495
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	154, 287
FokI	GGATG	2 cut(s)	128, 408
Fsp4HI	GCNGC	2 cut(s)	154, 287
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	154, 287
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	2 cut(s)	120, 346
HaeIII	GGCC	4 cut(s)	156, 235, 319, 538
HapII	CCGG	2 cut(s)	236, 336
Hin1II	CATG	4 cut(s)	50, 108, 277, 499
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	5, 526
HpaII	CCGG	2 cut(s)	236, 336
HphI	GGTGA	4 cut(s)	122, 137, 292, 430
Hpy166II	GTNNAC	3 cut(s)	121, 379, 433
Hpy188I	TCNGA	3 cut(s)	23, 190, 520
Hpy188III	TCNNGA	4 cut(s)	47, 307, 496, 513
Hpy8I	GTNNAC	3 cut(s)	121, 379, 433
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	224, 260
HpyCH4III	ACNGT	4 cut(s)	125, 280, 391, 467
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	5 cut(s)	286, 360, 399, 413, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	2 cut(s)	314, 612
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	4 cut(s)	50, 108, 277, 499
KpnI	GGTACC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	4 cut(s)	242, 273, 386, 430
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	2 cut(s)	143, 557
MalI	GATC	1 cut(s)	517
MboI	GATC	1 cut(s)	515
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	4 cut(s)	472, 521, 602, 634
MnlI	CCTC	8 cut(s)	106, 231, 267, 303, 309, 321, 464, 621
MseI	TTAA	2 cut(s)	59, 174
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	2 cut(s)	236, 336
MspR9I	CCNGG	2 cut(s)	158, 531
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	2 cut(s)	158, 531
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	1 cut(s)	515
NlaIII	CATG	4 cut(s)	50, 108, 277, 499
NlaIV	GGNNCC	3 cut(s)	297, 340, 350
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PagI	TCATGA	2 cut(s)	46, 495
PceI	AGGCCT	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	526
Pfl23II	CGTACG	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	155, 288
Ppu21I	YACGTR	1 cut(s)	446
PshAI	GACNNNNGTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	156, 529
PspEI	GGTNACC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	156, 529
PspLI	CGTACG	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	297, 340, 350
PspPI	GGNCC	4 cut(s)	160, 179, 233, 467
RsaI	GTAC	4 cut(s)	323, 340, 448, 464
RsaNI	GTAC	4 cut(s)	322, 339, 447, 463
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	59, 174
SatI	GCNGC	2 cut(s)	154, 287
Sau3AI	GATC	1 cut(s)	515
Sau96I	GGNCC	4 cut(s)	160, 179, 233, 467
ScrFI	CCNGG	2 cut(s)	158, 531
SetI	ASST	9 cut(s)	89, 140, 150, 162, 171, 205, 332, 448, 456
SfaNI	GCATC	4 cut(s)	242, 273, 386, 430
SinI	GGWCC	3 cut(s)	160, 179, 467
SmiMI	CAYNNNNRTG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	4 cut(s)	472, 521, 602, 634
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	3 cut(s)	30, 108, 153
SspMI	CTAG	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	156, 529
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	4 cut(s)	125, 280, 391, 467
TaiI	ACGT	1 cut(s)	448
TasI	AATT	4 cut(s)	472, 521, 602, 634
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	2 cut(s)	59, 174
Tru9I	TTAA	2 cut(s)	59, 174
TscAI	CASTG	1 cut(s)	620
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	620
VpaK11BI	GGWCC	3 cut(s)	160, 179, 467
XceI	RCATGY	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.