Rh3BG341600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004259
Physical Location & Seq
Reverse (-)
36679619 .. 36680484
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG341600.1

Sequence Viewer

Length: 342 bp
ATGTCGCGGACCGACGGCAACTGCCCTCTTCAGGAATGGTGTCACTTGTGCCATCAAATTCAGCCTTATGCGAGGGGACCTAAGGCCGTAGAATGCCCACCTCGTGTAGTTGAACACCCTCGTCAAGCACCACCAGATGAGAGTCCGAGATGCCCTTTATGTGAGGGCAACATGAGTATCATGGCACATTGGGTGCATGAAATAAAGAGGGAGCCGCCCTATTGGCAGTGTTGTCGAACTAATGGGCCAACGGTCCACAGACTATCATTCATTTGGGGAGATGAGTGCAAGATCCAGTTTAAGGGTTTCAACGGGTTCACTGACTATGAAGAACCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.16

Weight (kDa)

6.05

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 7, 215
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 31, 301
AgsI TTSAA 2 cut(s) 113, 310
AlwI GGATC 1 cut(s) 286
AoxI GGCC 2 cut(s) 84, 245
ApoI RAATTY 1 cut(s) 57
AspS9I GGNCC 4 cut(s) 9, 77, 245, 253
AvaII GGWCC 3 cut(s) 9, 77, 253
AxyI CCTNAGG 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 160, 193
BauI CACGAG 1 cut(s) 102
BccI CCATC 1 cut(s) 60
BceAI ACGGC 2 cut(s) 31, 71
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BglI GCCNNNNNGGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme18I GGWCC 3 cut(s) 9, 77, 253
BmgT120I GGNCC 4 cut(s) 9, 77, 245, 253
BmiI GGNNCC 2 cut(s) 78, 213
BmsI GCATC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 301
Bse1I ACTGG 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 31, 301
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 86, 247
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 31, 301
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 2 cut(s) 86, 247
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 2 cut(s) 7, 215
BspANI GGCC 2 cut(s) 86, 247
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 78, 213
BspPI GGATC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 295
BssMI GATC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 81, 336
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstUI CGCG 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 86, 247
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 233, 318
Cfr13I GGNCC 4 cut(s) 9, 77, 245, 253
CpoI CGGWCCG 1 cut(s) 9
CspI CGGWCCG 1 cut(s) 9
CviAII CATG 3 cut(s) 172, 181, 197
CviJI RGCY 4 cut(s) 64, 86, 214, 247
CviKI_1 RGCY 4 cut(s) 64, 86, 214, 247
DdeI CTNAG 2 cut(s) 81, 336
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 9, 77, 253
Eco57I CTGAAG 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 3 cut(s) 175, 184, 200
FaiI YATR 6 cut(s) 69, 160, 173, 182, 198, 327
FaqI GGGAC 1 cut(s) 90
FatI CATG 3 cut(s) 171, 180, 196
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 86, 247
Hin1II CATG 3 cut(s) 175, 184, 200
HinfI GANTC 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 256, 318
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 256, 318
Hpy99I CGWCG 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 196, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 81, 336
Hsp92II CATG 3 cut(s) 175, 184, 200
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 3 cut(s) 17, 147, 308
LweI GCATC 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 20, 341
MflI RGATCY 1 cut(s) 291
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 6 cut(s) 36, 66, 111, 129, 157, 201
MseI TTAA 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 98
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 1 cut(s) 291
NlaIII CATG 3 cut(s) 175, 184, 200
NlaIV GGNNCC 2 cut(s) 78, 213
NmuCI GTSAC 1 cut(s) 41
PctI GAATGC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 78, 213
PspPI GGNCC 4 cut(s) 9, 77, 245, 253
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 1 cut(s) 291
Rsr2I CGGWCCG 1 cut(s) 9
RsrII CGGWCCG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 4 cut(s) 9, 77, 245, 253
SchI GAGTC 1 cut(s) 151
SetI ASST 3 cut(s) 82, 103, 337
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 3 cut(s) 9, 77, 253
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 7, 215
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 235
TaqII GACCGA 1 cut(s) 26
TasI AATT 1 cut(s) 57
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 233, 325
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 213, 259, 342
TspRI CASTG 2 cut(s) 233, 325
VpaK11BI GGWCC 3 cut(s) 9, 77, 253
XapI RAATTY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.