Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Forward (+)

33173030 .. 33174905

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029112

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTGCAGACCGACGACAACTACCCTCTTCAGAAATGGTGTCACTTGTGCGGTCAGATTCAGCCTTATGCGAGGGGACTTAAGGCCGCAGAATGCCCACCTCATGTAGGTGAACACCCTCGTCAAGCACCACAAGATGAGAGTGTGAGATGCCCTTTATGTGACGGGAACATGAGTATCATGGCACATTTGGTGCACAAAATAATGAGGGAGCGGCCCCTTTGGCAGTGTTGTCGAACTAATGGGTACCCTTATTGCTGGGGTTATCGGTGGGTAGATGAGATGGCGGGAGGATCCACAGTGTGGGGGAGAATTGGAAAACTAAATGCGTATGCAGAACTCACGATGTATGGACCTAATTGCGAAATATGCTGCTGCTTGATGTGTTCCTACATATCACAATCTGAGGACAATTTTGGCAGGCCTTATTGGTACTGCTATTGGTTCCCGGGGCCAACGGTCCACAGACCATCATTCATTTGGGGAGATGAGTCCAAGATCCAGTTTGCGGGTTACAACGGGTTCACTGAGTATGAAGAACCTGAGGACAAAGGTTGGGGCATTTCACATATAACTGAAGCTGGGGTCATGGGGAGCAGGAGGGATCAATCAGTTTGTGCTCATGCAACGACAGGGAAAAAAGAGCCACCCCCAAACATGGTGTGGTGCGATGACGATGACTTCGCCGAATCATCACTACCACACTTGCATGGAAATAATGACAGTCATCCAGTTACCTGGGTGGTTCCAAGCAGCCGAGACGGCACGAACGGCTTAAGATTTGTCAGGGTTCAACATAATTCAACTTCCCGGTCGGCCATAGCGCTTGGGAATGGCCATCTTCAGGATAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

32.24

Weight (kDa)

5.88

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	5 cut(s)	51, 87, 214, 287, 509
AclWI	GGATC	4 cut(s)	288, 301, 493, 612
AcoI	YGGCCR	2 cut(s)	816, 835
AcuI	CTGAAG	3 cut(s)	14, 597, 827
AdeI	CACNNNGTG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	248, 434
AfeI	AGCGCT	1 cut(s)	825
AfiI	CCNNNNNNNGG	5 cut(s)	107, 303, 508, 658, 844
AflII	CTTAAG	2 cut(s)	80, 775
AgsI	TTSAA	2 cut(s)	794, 804
AjnI	CCWGG	1 cut(s)	737
AluBI	AGCT	1 cut(s)	581
AluI	AGCT	1 cut(s)	581
Alw21I	GWGCWC	2 cut(s)	198, 622
Alw26I	GTCTC	1 cut(s)	753
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	4 cut(s)	288, 301, 493, 612
Ama87I	CYCGRG	1 cut(s)	448
Aor51HI	AGCGCT	1 cut(s)	825
AoxI	GGCC	6 cut(s)	84, 215, 422, 452, 816, 835
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	3 cut(s)	372, 375, 753
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
Asp718I	GGTACC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	826
AspS9I	GGNCC	4 cut(s)	216, 353, 452, 460
AsuC2I	CCSGG	3 cut(s)	449, 450, 811
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	353, 460
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BalI	TGGCCA	1 cut(s)	837
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	198, 622
BbvI	GCAGC	3 cut(s)	359, 362, 765
BccI	CCATC	3 cut(s)	277, 478, 846
BceAI	ACGGC	2 cut(s)	778, 787
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	739
BcnI	CCSGG	3 cut(s)	449, 450, 811
BcoDI	GTCTC	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	827
BfrI	CTTAAG	2 cut(s)	80, 775
BglI	GCCNNNNNGGC	2 cut(s)	223, 762
BisI	GCNGC	5 cut(s)	87, 215, 373, 376, 754
BlsI	GCNGC	5 cut(s)	88, 216, 374, 377, 755
Bme1390I	CCNGG	4 cut(s)	449, 450, 739, 811
Bme18I	GGWCC	2 cut(s)	353, 460
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	4 cut(s)	216, 353, 452, 460
BmiI	GGNNCC	6 cut(s)	218, 248, 295, 446, 453, 747
BmrFI	CCNGG	4 cut(s)	449, 450, 739, 811
BmsI	GCATC	1 cut(s)	140
BpuMI	CCSGG	3 cut(s)	449, 450, 811
BsaJI	CCNNGG	3 cut(s)	448, 449, 738
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 303, 508, 658, 844
Bse1I	ACTGG	2 cut(s)	502, 731
Bse21I	CCTNAGG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	3 cut(s)	448, 449, 738
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	5 cut(s)	107, 303, 508, 658, 844
BseMII	CTCAG	3 cut(s)	396, 519, 534
BseNI	ACTGG	2 cut(s)	502, 731
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	359, 362, 765
BseYI	CCCAGC	2 cut(s)	258, 581
Bsh1285I	CGRYCG	1 cut(s)	815
BshFI	GGCC	6 cut(s)	86, 217, 424, 454, 818, 837
BshNI	GGYRCC	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	815
BsiHKAI	GWGCWC	2 cut(s)	198, 622
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	449, 811
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	5 cut(s)	107, 303, 508, 658, 844
BsmAI	GTCTC	1 cut(s)	753
BsmBI	CGTCTC	1 cut(s)	753
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	6 cut(s)	86, 217, 424, 454, 818, 837
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	198, 622
Bsp143I	GATC	3 cut(s)	293, 498, 604
BspACI	CCGC	5 cut(s)	51, 87, 214, 287, 509
BspANI	GGCC	6 cut(s)	86, 217, 424, 454, 818, 837
BspCNI	CTCAG	3 cut(s)	397, 520, 535
BspLI	GGNNCC	6 cut(s)	218, 248, 295, 446, 453, 747
BspPI	GGATC	4 cut(s)	288, 301, 493, 612
BspT107I	GGYRCC	1 cut(s)	246
BspTI	CTTAAG	2 cut(s)	80, 775
BsrBI	CCGCTC	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	502, 731
BssECI	CCNNGG	3 cut(s)	448, 449, 738
BssMI	GATC	3 cut(s)	293, 498, 604
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	3 cut(s)	301, 460, 725
Bst6I	CTCTTC	1 cut(s)	33
BstAFI	CTTAAG	2 cut(s)	80, 775
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	405, 528, 543
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	727
BstH2I	RGCGCY	1 cut(s)	827
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	3 cut(s)	296, 501, 607
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	3 cut(s)	293, 498, 604
BstMCI	CGRYCG	1 cut(s)	815
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 369, 762, 771
BstNI	CCWGG	1 cut(s)	739
BstSCI	CCNGG	4 cut(s)	447, 448, 737, 809
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	359, 362, 765
BstX2I	RGATCY	2 cut(s)	293, 498
BstXI	CCANNNNNNTGG	1 cut(s)	738
BstYI	RGATCY	2 cut(s)	293, 498
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	6 cut(s)	86, 217, 424, 454, 818, 837
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	727
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	233, 306, 525
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	1 cut(s)	826
Cfr13I	GGNCC	4 cut(s)	216, 353, 452, 460
Cfr9I	CCCGGG	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	247, 433
CviAII	CATG	7 cut(s)	104, 172, 181, 589, 623, 658, 710
CviQI	GTAC	2 cut(s)	247, 433
DdeI	CTNAG	3 cut(s)	405, 528, 543
DpnI	GATC	3 cut(s)	295, 500, 606
DpnII	GATC	3 cut(s)	293, 498, 604
DraIII	CACNNNGTG	1 cut(s)	303
EaeI	YGGCCR	2 cut(s)	816, 835
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	353, 460
Eco47III	AGCGCT	1 cut(s)	825
Eco57I	CTGAAG	3 cut(s)	14, 597, 827
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	737
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	7 cut(s)	107, 175, 184, 592, 626, 661, 713
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	7 cut(s)	103, 171, 180, 588, 622, 657, 709
FauI	CCCGC	2 cut(s)	280, 502
Fnu4HI	GCNGC	5 cut(s)	87, 215, 373, 376, 754
FokI	GGATG	1 cut(s)	714
Fsp4HI	GCNGC	5 cut(s)	87, 215, 373, 376, 754
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	5 cut(s)	87, 215, 373, 376, 754
GsaI	CCCAGC	2 cut(s)	262, 585
HaeII	RGCGCY	1 cut(s)	827
HaeIII	GGCC	6 cut(s)	86, 217, 424, 454, 818, 837
HapII	CCGG	2 cut(s)	449, 811
HhaI	GCGC	1 cut(s)	826
Hin1II	CATG	7 cut(s)	107, 175, 184, 592, 626, 661, 713
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HinfI	GANTC	3 cut(s)	58, 491, 689
HpaII	CCGG	2 cut(s)	449, 811
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	4 cut(s)	113, 196, 463, 525
Hpy188I	TCNGA	3 cut(s)	33, 57, 406
Hpy188III	TCNNGA	2 cut(s)	343, 845
Hpy8I	GTNNAC	4 cut(s)	113, 196, 463, 525
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	3 cut(s)	301, 460, 725
HpyCH4V	TGCA	5 cut(s)	7, 196, 335, 626, 709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 369, 762, 771
HpyF3I	CTNAG	3 cut(s)	405, 528, 543
Hsp92II	CATG	7 cut(s)	107, 175, 184, 592, 626, 661, 713
HspAI	GCGC	1 cut(s)	824
KpnI	GGTACC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	293, 498, 604
LmnI	GCTCC	2 cut(s)	211, 594
Lsp1109I	GCAGC	3 cut(s)	359, 362, 765
LweI	GCATC	1 cut(s)	140
MaeIII	GTNAC	4 cut(s)	41, 161, 512, 733
MalI	GATC	3 cut(s)	295, 500, 606
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	3 cut(s)	293, 498, 604
MboII	GAAGA	3 cut(s)	20, 548, 833
MflI	RGATCY	2 cut(s)	293, 498
MhlI	GDGCHC	2 cut(s)	198, 622
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	4 cut(s)	312, 358, 412, 799
MluNI	TGGCCA	1 cut(s)	837
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	9 cut(s)	36, 66, 111, 129, 201, 284, 400, 538, 594
Mox20I	TGGCCA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	2 cut(s)	81, 776
MslI	CAYNNNNRTG	2 cut(s)	108, 708
Msp20I	TGGCCA	1 cut(s)	837
MspCI	CTTAAG	2 cut(s)	80, 775
MspI	CCGG	2 cut(s)	449, 811
MspR9I	CCNGG	4 cut(s)	449, 450, 739, 811
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	739
MwoI	GCNNNNNNNGC	4 cut(s)	223, 369, 762, 771
NciI	CCSGG	3 cut(s)	449, 450, 811
NdeII	GATC	3 cut(s)	293, 498, 604
NlaIII	CATG	7 cut(s)	107, 175, 184, 592, 626, 661, 713
NlaIV	GGNNCC	6 cut(s)	218, 248, 295, 446, 453, 747
NmeAIII	GCCGAG	1 cut(s)	782
NmuCI	GTSAC	2 cut(s)	41, 161
PceI	AGGCCT	1 cut(s)	424
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	58, 689
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	88, 216, 374, 377, 755
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	737
PspFI	CCCAGC	2 cut(s)	258, 581
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	6 cut(s)	218, 248, 295, 446, 453, 747
PspPI	GGNCC	4 cut(s)	216, 353, 452, 460
PsuI	RGATCY	2 cut(s)	293, 498
RsaI	GTAC	2 cut(s)	248, 434
RsaNI	GTAC	2 cut(s)	247, 433
RseI	CAYNNNNRTG	2 cut(s)	108, 708
SaqAI	TTAA	2 cut(s)	81, 776
SatI	GCNGC	5 cut(s)	87, 215, 373, 376, 754
Sau3AI	GATC	3 cut(s)	293, 498, 604
Sau96I	GGNCC	4 cut(s)	216, 353, 452, 460
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	4 cut(s)	449, 450, 739, 811
SduI	GDGCHC	2 cut(s)	198, 622
SetI	ASST	7 cut(s)	103, 112, 358, 544, 556, 583, 740
SfaNI	GCATC	1 cut(s)	140
SinI	GGWCC	2 cut(s)	353, 460
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	108, 708
SmlI	CTYRAG	2 cut(s)	80, 775
SmoI	CTYRAG	2 cut(s)	80, 775
Sse9I	AATT	4 cut(s)	312, 358, 412, 799
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	5 cut(s)	51, 87, 214, 287, 509
StuI	AGGCCT	1 cut(s)	424
StyD4I	CCNGG	4 cut(s)	447, 448, 737, 809
TaaI	ACNGT	3 cut(s)	301, 460, 725
TaqI	TCGA	1 cut(s)	235
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	4 cut(s)	312, 358, 412, 799
TauI	GCSGC	2 cut(s)	89, 217
TfiI	GAWTC	2 cut(s)	58, 689
Tru1I	TTAA	2 cut(s)	81, 776
Tru9I	TTAA	2 cut(s)	81, 776
TscAI	CASTG	3 cut(s)	233, 306, 532
TseFI	GTSAC	2 cut(s)	41, 161
TseI	GCWGC	3 cut(s)	372, 375, 753
Tsp45I	GTSAC	2 cut(s)	41, 161
TspDTI	ATGAA	2 cut(s)	466, 549
TspMI	CCCGGG	1 cut(s)	448
TspRI	CASTG	3 cut(s)	233, 306, 532
Van91I	CCANNNNNTGG	1 cut(s)	303
Vha464I	CTTAAG	2 cut(s)	80, 775
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	353, 460
XagI	CCTNNNNNAGG	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	2 cut(s)	477, 660
XmaI	CCCGGG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.