Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Reverse (-)

60294002 .. 60295640

Gene Structure 1639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG419600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACTCGGCTGGGAACATCAGAACTAGCGGGTTCAATACTGCGGGAGCATGCAGTGAGGATGTCAACTGTCCTATTCAAAGGTGGTGTCACCTATGCGGCCAGGTCCATCAGGTAGTTAAAGGACCACGCTCTGAAGAATGCCCACCTGTTGACGGCAAGCACCCTCCCAAGGAAGGATCGGACGAAAGTCCCCGATGCCCTCTCTGTGAAGGGAACATGATGGTGATGCAGCATTGGGTGCCTAAAATCAAGAAGCTGAGGCCGTACTGGAGGTATGCCGGTACCAACTTGGCGGTTGATCTTGCAGGGGTTCCTATATTGCAGGGGTATAGATGGGTGGACAAGATGACTGTGGGATGCACCAAGCATAATGCAGGGATGAGATATAATGACATTCCTGCACCTACATTGCATAACTATCCGAACCTCACAATGTACGGTCCTAATTGTGAAGTGTGTGATGGCTTCATGATGTCATTTATTTCACGATCTGAATTGAATCCAGGCAGGCCTTATTGGTTCTGCTATGGTTACCCTATCAGTCCGATCCACAGGCCACAATTCATATGGGGAGATGAGTGCAAAATACATTTTGCAGGATTTGATTCCTTCACTGACTATGAAGTTCCGGCACAATCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.26

Weight (kDa)

6.69

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	241, 284
AciI	CCGC	4 cut(s)	30, 44, 99, 296
AclWI	GGATC	2 cut(s)	187, 544
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	3 cut(s)	269, 286, 440
AfiI	CCNNNNNNNGG	3 cut(s)	155, 172, 176
AgsI	TTSAA	3 cut(s)	37, 80, 502
AjnI	CCWGG	2 cut(s)	102, 505
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
AlwI	GGATC	2 cut(s)	187, 544
AoxI	GGCC	4 cut(s)	100, 263, 512, 557
ApeKI	GCWGC	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
Asp718I	GGTACC	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	106, 125, 443
AsuHPI	GGTGA	3 cut(s)	83, 238, 633
AvaII	GGWCC	3 cut(s)	106, 125, 443
BanI	GGYRCC	2 cut(s)	241, 284
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	4 cut(s)	117, 217, 330, 458
BceAI	ACGGC	2 cut(s)	172, 250
BciT130I	CCWGG	2 cut(s)	104, 507
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	100, 233
BlsI	GCNGC	2 cut(s)	101, 234
Bme1390I	CCNGG	2 cut(s)	104, 507
Bme18I	GGWCC	3 cut(s)	106, 125, 443
BmgT120I	GGNCC	3 cut(s)	106, 125, 443
BmiI	GGNNCC	3 cut(s)	243, 286, 315
BmrFI	CCNGG	2 cut(s)	104, 507
BmsI	GCATC	3 cut(s)	188, 219, 350
BoxI	GACNNNNGTC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 172, 176
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	104, 507
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	3 cut(s)	67, 365, 387
BseLI	CCNNNNNNNGG	3 cut(s)	155, 172, 176
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	102, 265, 514, 559
BshNI	GGYRCC	2 cut(s)	241, 284
BsiSI	CCGG	2 cut(s)	282, 632
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	155, 172, 176
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	4 cut(s)	102, 265, 514, 559
Bsp143I	GATC	4 cut(s)	179, 301, 491, 549
BspACI	CCGC	4 cut(s)	30, 44, 99, 296
BspANI	GGCC	4 cut(s)	102, 265, 514, 559
BspCNI	CTCAG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	243, 286, 315
BspPI	GGATC	2 cut(s)	187, 544
BspT107I	GGYRCC	2 cut(s)	241, 284
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	4 cut(s)	179, 301, 491, 549
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	104, 507
Bst4CI	ACNGT	3 cut(s)	71, 355, 443
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	52, 161, 512
BstDEI	CTNAG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	67, 365, 387
BstKTI	GATC	4 cut(s)	182, 304, 494, 552
BstMBI	GATC	4 cut(s)	179, 301, 491, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	104, 507
BstNSI	RCATGY	1 cut(s)	54
BstPAI	GACNNNNGTC	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	102, 505
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	4 cut(s)	102, 265, 514, 559
BtsCI	GGATG	3 cut(s)	67, 365, 387
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	61, 615
Cac8I	GCNNGC	3 cut(s)	52, 161, 512
CciI	TCATGA	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	3 cut(s)	106, 125, 443
Csp6I	GTAC	3 cut(s)	268, 285, 439
CviAII	CATG	3 cut(s)	51, 220, 472
CviJI	RGCY	7 cut(s)	11, 102, 259, 265, 468, 514, 559
CviKI_1	RGCY	7 cut(s)	11, 102, 259, 265, 468, 514, 559
CviQI	GTAC	3 cut(s)	268, 285, 439
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	4 cut(s)	181, 303, 493, 551
DpnII	GATC	4 cut(s)	179, 301, 491, 549
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	514
Eco47I	GGWCC	3 cut(s)	106, 125, 443
Eco57I	CTGAAG	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	102, 505
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	54, 223, 475
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	3 cut(s)	50, 219, 471
FauI	CCCGC	2 cut(s)	23, 37
FauNDI	CATATG	1 cut(s)	569
Fnu4HI	GCNGC	2 cut(s)	100, 233
FokI	GGATG	3 cut(s)	74, 372, 394
Fsp4HI	GCNGC	2 cut(s)	100, 233
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	100, 233
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	292
HaeIII	GGCC	4 cut(s)	102, 265, 514, 559
HapII	CCGG	2 cut(s)	282, 632
Hin1II	CATG	3 cut(s)	54, 223, 475
HincII	GTYRAC	2 cut(s)	67, 154
HindII	GTYRAC	2 cut(s)	67, 154
HinfI	GANTC	3 cut(s)	5, 502, 608
HpaII	CCGG	2 cut(s)	282, 632
HphI	GGTGA	3 cut(s)	83, 238, 633
Hpy166II	GTNNAC	3 cut(s)	67, 154, 343
Hpy188I	TCNGA	6 cut(s)	23, 136, 184, 426, 496, 549
Hpy188III	TCNNGA	3 cut(s)	253, 472, 489
Hpy8I	GTNNAC	3 cut(s)	67, 154, 343
HpyAV	CCTTC	3 cut(s)	170, 206, 622
HpyCH4III	ACNGT	3 cut(s)	71, 355, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	54, 223, 475
KpnI	GGTACC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	179, 301, 491, 549
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	3 cut(s)	188, 219, 350
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	89, 533
MalI	GATC	4 cut(s)	181, 303, 493, 551
MboI	GATC	4 cut(s)	179, 301, 491, 549
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	3 cut(s)	448, 497, 563
MnlI	CCTC	6 cut(s)	52, 177, 213, 255, 267, 440
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	282, 632
MspR9I	CCNGG	2 cut(s)	104, 507
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	104, 507
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeI	CATATG	1 cut(s)	569
NdeII	GATC	4 cut(s)	179, 301, 491, 549
NlaIII	CATG	3 cut(s)	54, 223, 475
NlaIV	GGNNCC	3 cut(s)	243, 286, 315
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	514
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	502, 608
PkrI	GCNGC	2 cut(s)	101, 234
PshAI	GACNNNNGTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	102, 505
PspEI	GGTNACC	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	102, 505
PspN4I	GGNNCC	3 cut(s)	243, 286, 315
PspPI	GGNCC	3 cut(s)	106, 125, 443
RsaI	GTAC	3 cut(s)	269, 286, 440
RsaNI	GTAC	3 cut(s)	268, 285, 439
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	100, 233
Sau3AI	GATC	4 cut(s)	179, 301, 491, 549
Sau96I	GGNCC	3 cut(s)	106, 125, 443
ScrFI	CCNGG	2 cut(s)	104, 507
SetI	ASST	9 cut(s)	86, 96, 108, 117, 151, 261, 278, 409, 432
SfaNI	GCATC	3 cut(s)	188, 219, 350
SinI	GGWCC	3 cut(s)	106, 125, 443
SmiMI	CAYNNNNRTG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	448, 497, 563
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	4 cut(s)	30, 44, 99, 296
SspMI	CTAG	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	2 cut(s)	102, 505
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	71, 355, 443
TasI	AATT	3 cut(s)	448, 497, 563
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	502, 608
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	61, 622
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	460, 556, 639
TspRI	CASTG	2 cut(s)	61, 622
VpaK11BI	GGWCC	3 cut(s)	106, 125, 443
XceI	RCATGY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.