Rorug05G0106300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004259
Physical Location & Seq
Reverse (-)
9334572 .. 9337907
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0106300.1

Sequence Viewer

Length: 747 bp
ATGCAGGGAAAGTCTGAGACTTTTGGAGGGAATTTCAGTACCCAAAATAGGATTTCCTATTTTGTTCATTACAATGAGAGCACTGAAATGCTTTGTGGGTTCCTGAAGAAATTTCCAGTTAGTGATTCTGATAGAACTGTCATGGAAGAGTGTAGAGGACTTGTAGTAGTCTCGGCTATCTTCAATGATAATGATAAAATTCGACAACCCAAGGGGATTGGATCGAAAACCCTTGAGAATGTATGTTTCTTTATGTTTATAGATGAGATAACCCTCAAAAGATTTTACCAGCATCATTTGATTCCAGAAAAATCTGAAAACTACAAGATTGGTGCATGGAGGGTTGTCAAGGGTTTGAGCAAGGGATTGTATGAGAATCCGGCAATGAATGGTGTGATACCAAAGTATTTAGTTCATAGACTTTTCCCAAACGCCAAATTCATCATTTGGGTGGATGCGAAAATGCAGCTGATGGTTGATCCATTACTTTTGATTCATACACTTGCTGTGAATGAGAACCCCGATATGGCGATTTCAAAGCATCCTTACTATGTTCATACTATGGAAGAAGCAATGGCGACGGTGAGGTGGAAGAAATGGTGGGACGTTGATGGATTGAAGAGGCAAATGGAGACTTGTTGCTCCCCTGGACTCCTGATAAGCTTCCTTATCCCTCAGGAGCAACTTGATATCTATCAAACGTTTCTTAAAGCCAACTTCTTGTTGATAGAAGATTGCTATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

28.82

Weight (kDa)

7.04

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 4 - 218 1.8e-69 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 701
AclWI GGATC 2 cut(s) 229, 473
AcsI RAATTY 4 cut(s) 31, 110, 198, 437
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 48, 526
AgsI TTSAA 3 cut(s) 184, 537, 619
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 2 cut(s) 469, 663
AluI AGCT 2 cut(s) 469, 663
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 3 cut(s) 11, 175, 626
AlwI GGATC 2 cut(s) 229, 473
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 4 cut(s) 31, 110, 198, 437
AsuHPI GGTGA 1 cut(s) 595
AxyI CCTNAGG 1 cut(s) 675
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 478
BccI CCATC 2 cut(s) 466, 605
BciT130I CCWGG 1 cut(s) 648
BcoDI GTCTC 3 cut(s) 11, 175, 626
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 648
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 648
BmsI GCATC 3 cut(s) 301, 445, 550
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 210, 646
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 526
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 2 cut(s) 390, 579
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 2 cut(s) 210, 646
BseGI GGATG 2 cut(s) 460, 541
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 48, 526
BseMI GCAATG 2 cut(s) 390, 579
BseMII CTCAG 2 cut(s) 6, 689
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 2 cut(s) 48, 526
BsmAI GTCTC 3 cut(s) 11, 175, 626
BsmFI GGGAC 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 221, 478
BspCNI CTCAG 2 cut(s) 7, 688
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 2 cut(s) 229, 473
BsrDI GCAATG 2 cut(s) 390, 579
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 210, 646
BssMI GATC 2 cut(s) 221, 478
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 2 cut(s) 139, 583
Bst6I CTCTTC 2 cut(s) 141, 614
BstDEI CTNAG 2 cut(s) 15, 675
BstF5I GGATG 2 cut(s) 460, 541
BstKTI GATC 2 cut(s) 224, 481
BstMAI GTCTC 3 cut(s) 11, 175, 626
BstMBI GATC 2 cut(s) 221, 478
BstNI CCWGG 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 675
BtsCI GGATG 2 cut(s) 460, 541
BtsIMutI CAGTG 1 cut(s) 81
Csp6I GTAC 1 cut(s) 39
CviAII CATG 2 cut(s) 142, 336
CviJI RGCY 4 cut(s) 176, 469, 663, 713
CviKI_1 RGCY 4 cut(s) 176, 469, 663, 713
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 15, 675
DpnI GATC 2 cut(s) 223, 480
DpnII GATC 2 cut(s) 221, 478
Eam1104I CTCTTC 2 cut(s) 141, 614
EarI CTCTTC 2 cut(s) 141, 614
Eco130I CCWWGG 1 cut(s) 210
Eco32I GATATC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 646
EcoRV GATATC 1 cut(s) 691
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 145, 339
FaqI GGGAC 1 cut(s) 617
FatI CATG 2 cut(s) 141, 335
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 2 cut(s) 467, 528
Fsp4HI GCNGC 1 cut(s) 467
GluI GCNGC 1 cut(s) 467
HapII CCGG 1 cut(s) 380
Hin1II CATG 2 cut(s) 145, 339
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 5 cut(s) 125, 301, 376, 493, 651
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 595
Hpy188I TCNGA 3 cut(s) 16, 130, 316
Hpy188III TCNNGA 4 cut(s) 103, 305, 655, 677
Hpy99I CGWCG 1 cut(s) 583
HpyCH4III ACNGT 2 cut(s) 139, 583
HpyCH4IV ACGT 2 cut(s) 606, 701
HpyCH4V TGCA 3 cut(s) 4, 335, 466
HpyF3I CTNAG 2 cut(s) 15, 675
HpySE526I ACGT 2 cut(s) 606, 701
Hsp92II CATG 2 cut(s) 145, 339
Kzo9I GATC 2 cut(s) 221, 478
LmnI GCTCC 2 cut(s) 647, 679
LpnPI CCDG 9 cut(s) 116, 129, 302, 318, 393, 633, 660, 662, 668
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 3 cut(s) 301, 445, 550
MaeII ACGT 2 cut(s) 606, 701
MalI GATC 2 cut(s) 223, 480
MboI GATC 2 cut(s) 221, 478
MboII GAAGA 7 cut(s) 118, 158, 172, 578, 604, 631, 743
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 4 cut(s) 31, 110, 198, 437
MlyI GAGTC 1 cut(s) 645
MnlI CCTC 7 cut(s) 20, 149, 284, 333, 579, 615, 684
MseI TTAA 1 cut(s) 708
MslI CAYNNNNRTG 3 cut(s) 72, 86, 449
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 648
NdeII GATC 2 cut(s) 221, 478
NlaIII CATG 2 cut(s) 145, 339
NlaIV GGNNCC 1 cut(s) 101
NmeAIII GCCGAG 1 cut(s) 152
PfeI GAWTC 4 cut(s) 125, 301, 376, 493
PkrI GCNGC 1 cut(s) 468
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
Psp1406I AACGTT 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 3 cut(s) 72, 86, 449
SaqAI TTAA 1 cut(s) 708
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 2 cut(s) 221, 478
SchI GAGTC 1 cut(s) 645
ScrFI CCNGG 1 cut(s) 648
SduI GDGCHC 1 cut(s) 83
SetI ASST 5 cut(s) 471, 590, 609, 665, 704
SfaNI GCATC 3 cut(s) 301, 445, 550
SmiMI CAYNNNNRTG 3 cut(s) 72, 86, 449
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 31, 110, 198, 437
StyD4I CCNGG 1 cut(s) 646
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 139, 583
TaiI ACGT 2 cut(s) 609, 704
TaqI TCGA 2 cut(s) 202, 224
TasI AATT 4 cut(s) 31, 110, 198, 437
TfiI GAWTC 4 cut(s) 125, 301, 376, 493
Tru1I TTAA 1 cut(s) 708
Tru9I TTAA 1 cut(s) 708
TscAI CASTG 1 cut(s) 88
TseI GCWGC 1 cut(s) 466
TspDTI ATGAA 6 cut(s) 56, 401, 404, 430, 485, 545
TspRI CASTG 1 cut(s) 88
XapI RAATTY 4 cut(s) 31, 110, 198, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.