Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Reverse (-)

41388147 .. 41389127

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0343400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGTTTTTGGAAAAAGCTATGGAAGGTTCATATACCTAACTCTGCCAAGGTTCATATCTGGAGAGTTTGTCATAATATATTACCTTCATTGGAAAGGCTTGCGTCAAAAAGGGTTATACTGGACTCTTTAGTGTGTGTTCTATGTTCTTCTTCTTTAGAGACTACATTGCATATATGTCGGGATTGCCCTTACACTAAGCAGTTGGTTCAAGCTAATGGAGTCTTGGCTCAGGTGTGTTTTAATCCTCATACAGCTCACTGTGATTTATTGGAATGGTTTAGCTATTGTGTCTATGAGCTTGCTTTAAAAGATTTGGGTGACTTGATTTATATTCTTTGGGGAGTATGGAAGGAACGAAACAATAGAGTTTGGGAAAATAAAAGGCTTCCTGCATGTGATGTTATACTCAAGTCTGTGACTCGGTTGCATGCATACAGATTTTATAACTTGAAGGTGGGAATTGGACGTCCTGTGTGGGTTGTTCGATGGTCTGCACCACCTTTGGGTTGGTGCAAGATCAATGTAGATGGATCTTATAATCACACAACAAAGAATGGAGGCATTGGTTTTGTTATTCGAGACTATCAGGGTGTGTTACTTACTAGTGGCGGACGACCACTACATGGTCTTCTTTCGCCTGAACATGCAGAAGTGCTTGCTTGTAGTATGGCAGTGCATTTTGCTGTAGAAAATACTTTTGTTCCAGCCATTTTGGAAACAGACTCTCAACTTGTCCAGAGGCAGTTGACAGGGCTAGATGGGATTAACACTTCTATCTTGGGTCGAGTTTATGAGGACCTGAGGCTAGCTTTGGAAGGTCAGAATAATATGAAGATTGTTCATATCAACAGGAGCGCAAATAAGGTTGCACACCTTATGGCAGCACAAGCTTGTTTTGAGCTGCAAGAGTTTTTTTACTTTTCATCTTCCCCTTCATTTTTGTCAGCTGCATTAGCAGCTGAATCCACCCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

36.78

Weight (kDa)

8.68

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	3 - 69	8e-11	zinc-binding in reverse transcriptase
RVT_3	PF13456	175 - 297	3.2e-24	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	447, 540
AatII	GACGTC	1 cut(s)	472
AccB7I	CCANNNNNTGG	1 cut(s)	626
AciI	CCGC	1 cut(s)	612
AclWI	GGATC	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	506, 626
AgsI	TTSAA	2 cut(s)	212, 454
AhlI	ACTAGT	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	155, 576
AlwI	GGATC	1 cut(s)	541
ApeKI	GCWGC	4 cut(s)	884, 904, 950, 959
AspLEI	GCGC	1 cut(s)	860
AspS9I	GGNCC	1 cut(s)	799
AsuHPI	GGTGA	1 cut(s)	332
AsuNHI	GCTAGC	1 cut(s)	808
AvaII	GGWCC	1 cut(s)	799
AxyI	CCTNAGG	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	623
BbvI	GCAGC	4 cut(s)	891, 896, 937, 971
BccI	CCATC	3 cut(s)	483, 524, 755
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BcoDI	GTCTC	2 cut(s)	155, 576
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	3 cut(s)	606, 758, 809
BfmI	CTRYAG	1 cut(s)	687
BisI	GCNGC	4 cut(s)	885, 905, 951, 960
BlsI	GCNGC	4 cut(s)	886, 906, 952, 961
Bme18I	GGWCC	1 cut(s)	799
BmgT120I	GGNCC	1 cut(s)	799
BmtI	GCTAGC	1 cut(s)	812
BpiI	GAAGAC	1 cut(s)	623
BpmI	CTGGAG	1 cut(s)	82
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 626
Bse1I	ACTGG	1 cut(s)	126
Bse21I	CCTNAGG	1 cut(s)	803
Bse3DI	GCAATG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	506, 626
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	245, 794
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	891, 896, 937, 971
BsgI	GTGCAG	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	506, 626
BsmAI	GTCTC	2 cut(s)	155, 576
Bsp143I	GATC	2 cut(s)	519, 533
BspACI	CCGC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	244, 795
BspOI	GCTAGC	1 cut(s)	812
BspPI	GGATC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	519, 533
BssNI	GRCGYC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	469
BstC8I	GCNNGC	5 cut(s)	102, 303, 432, 660, 810
BstDEI	CTNAG	3 cut(s)	198, 231, 803
BstHHI	GCGC	1 cut(s)	860
BstKTI	GATC	2 cut(s)	522, 536
BstMAI	GTCTC	2 cut(s)	155, 576
BstMBI	GATC	2 cut(s)	519, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	890, 956, 959
BstNSI	RCATGY	3 cut(s)	399, 434, 650
BstSFI	CTRYAG	1 cut(s)	687
BstV1I	GCAGC	4 cut(s)	891, 896, 937, 971
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
Bsu36I	CCTNAGG	1 cut(s)	803
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	259, 681
Cac8I	GCNNGC	5 cut(s)	102, 303, 432, 660, 810
CfoI	GCGC	1 cut(s)	860
Cfr13I	GGNCC	1 cut(s)	799
CseI	GACGC	1 cut(s)	93
CviAII	CATG	4 cut(s)	396, 431, 626, 647
DdeI	CTNAG	3 cut(s)	198, 231, 803
DpnI	GATC	2 cut(s)	521, 535
DpnII	GATC	2 cut(s)	519, 533
DraI	TTTAAA	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	799
Eco81I	CCTNAGG	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	799
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	399, 434, 629, 650
FatI	CATG	4 cut(s)	395, 430, 625, 646
Fnu4HI	GCNGC	4 cut(s)	885, 905, 951, 960
Fsp4HI	GCNGC	4 cut(s)	885, 905, 951, 960
FspBI	CTAG	3 cut(s)	606, 758, 809
GlaI	GCGC	1 cut(s)	859
GluI	GCNGC	4 cut(s)	885, 905, 951, 960
GsuI	CTGGAG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	860
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	399, 434, 629, 650
Hin6I	GCGC	1 cut(s)	858
HinP1I	GCGC	1 cut(s)	858
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	5 cut(s)	125, 222, 421, 725, 965
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	1 cut(s)	825
Hpy188III	TCNNGA	4 cut(s)	61, 182, 581, 739
Hpy8I	GTNNAC	1 cut(s)	750
HpyAV	CCTTC	6 cut(s)	19, 96, 346, 448, 812, 945
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	890, 956, 959
HpyF3I	CTNAG	3 cut(s)	198, 231, 803
HpySE526I	ACGT	1 cut(s)	469
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	399, 434, 629, 650
HspAI	GCGC	1 cut(s)	858
Kzo9I	GATC	2 cut(s)	519, 533
LmnI	GCTCC	1 cut(s)	855
Lsp1109I	GCAGC	4 cut(s)	891, 896, 937, 971
MaeI	CTAG	3 cut(s)	606, 758, 809
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	320, 418, 597
MalI	GATC	2 cut(s)	521, 535
MboI	GATC	2 cut(s)	519, 533
MboII	GAAGA	5 cut(s)	141, 144, 623, 847, 921
MflI	RGATCY	1 cut(s)	533
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	4 cut(s)	119, 231, 415, 719
MnlI	CCTC	5 cut(s)	258, 554, 735, 790, 798
Mph1103I	ATGCAT	1 cut(s)	436
MseI	TTAA	3 cut(s)	243, 308, 768
MspA1I	CMGCKG	2 cut(s)	950, 962
MwoI	GCNNNNNNNGC	3 cut(s)	890, 956, 959
NdeII	GATC	2 cut(s)	519, 533
NheI	GCTAGC	1 cut(s)	808
NlaIII	CATG	4 cut(s)	399, 434, 629, 650
NmuCI	GTSAC	2 cut(s)	320, 418
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	3 cut(s)	399, 434, 650
PaeI	GCATGC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	965
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	886, 906, 952, 961
PleI	GAGTC	4 cut(s)	119, 230, 415, 719
PpsI	GAGTC	4 cut(s)	119, 230, 415, 719
PpuMI	RGGWCCY	1 cut(s)	799
PsiI	TTATAA	2 cut(s)	447, 540
Psp5II	RGGWCCY	1 cut(s)	799
PspPI	GGNCC	1 cut(s)	799
PspPPI	RGGWCCY	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	2 cut(s)	950, 962
SaqAI	TTAA	3 cut(s)	243, 308, 768
SatI	GCNGC	4 cut(s)	885, 905, 951, 960
Sau3AI	GATC	2 cut(s)	519, 533
Sau96I	GGNCC	1 cut(s)	799
SchI	GAGTC	4 cut(s)	119, 231, 415, 719
SfcI	CTRYAG	1 cut(s)	687
SinI	GGWCC	1 cut(s)	799
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	605
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	612
SspMI	CTAG	3 cut(s)	606, 758, 809
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	3 cut(s)	487, 580, 787
TasI	AATT	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	965
Tru1I	TTAA	3 cut(s)	243, 308, 768
Tru9I	TTAA	3 cut(s)	243, 308, 768
TscAI	CASTG	2 cut(s)	266, 681
TseFI	GTSAC	2 cut(s)	320, 418
TseI	GCWGC	4 cut(s)	884, 904, 950, 959
Tsp45I	GTSAC	2 cut(s)	320, 418
TspDTI	ATGAA	7 cut(s)	20, 44, 78, 833, 848, 915, 927
TspRI	CASTG	2 cut(s)	266, 681
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	799
XceI	RCATGY	3 cut(s)	399, 434, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	3 cut(s)	606, 758, 809
ZraI	GACGTC	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.