Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Forward (+)

61624149 .. 61626584

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG365000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCTGGCCCTTCGCCGTGATGCAATTGAGTGGGCTGGACACCGTAATAAACCCTATTCCAACTGCGGCCCAGACACCGGAACAAAACCTAGTATAAATGTCTCCCGTTCCCGGAACTCTTCTCTTTTCAGCCACCGAAAACAACCAAACAGACGTCTGAGCGACTGGCCGACCACAGGGTTCGAATTGCAAATCCAACCACCAGGAGGGGAGATGGACTCGGCTGGGAACATCAGAACTAGCGGGTTGAATACTGCTGGAGCATGCGGTGAGGATGTCAACTGTCCTATTCAAAGGTGGTGTCACCTATGCGGCCAGGTCCAGCAGGTAGTTAAAGGACCACGCTCTGAAGAATGCCCACCTTTTGACGGCAAGCACCCTCCCAAGGAAGGGCCGGACGAAAGTCCCCGATGCCCTCTCTGTGAAGGGAACATGACGGTGATGCAGCATTGGGTGCCTGAAATCAAGAGGCTGAGGCCGTACTGGAGGTGTGCCGGTACCAACGGGTTCCCATATTGCAGGGGGTATAGATGGGTGGACGAGATGACCGTGGGATGCACCGAGCATAATGCAGGGGTGAGATATAATGTAGACATTGATGCACGTACGAACCTCACAATGTACGGTCCTAATTGTGAAGTGTGTGATGGCTTCATGATGTCGTTTATATCACGATCTGAATTGAATCCAGGCAGGCCTTATTGGTTCTGCTATGGTTACCCTGGTCCAATCCACAGGCCACAATTCATATGGGGAGATGAGTGCAAAATACATTTTGCGGGATTTGATTCCTTCACTCAATATGAAGTTCCGGCACGGTCACCACAGGAAGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.53

Weight (kDa)

7.49

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	316
Acc65I	GGTACC	1 cut(s)	497
AccB1I	GGYRCC	2 cut(s)	454, 497
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	5 cut(s)	66, 243, 267, 312, 779
AcoI	YGGCCR	2 cut(s)	167, 313
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	4 cut(s)	482, 499, 607, 623
AfiI	CCNNNNNNNGG	9 cut(s)	77, 111, 176, 206, 368, 385, 389, 390, 830
AgsI	TTSAA	3 cut(s)	250, 293, 685
AjnI	CCWGG	4 cut(s)	202, 315, 688, 721
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	8 cut(s)	6, 67, 167, 313, 392, 476, 695, 737
ApeKI	GCWGC	1 cut(s)	445
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
Asp718I	GGTACC	1 cut(s)	497
AspS9I	GGNCC	7 cut(s)	7, 68, 319, 338, 392, 626, 725
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	5 cut(s)	281, 296, 451, 589, 813
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	4 cut(s)	319, 338, 626, 725
BanI	GGYRCC	2 cut(s)	454, 497
BbvCI	CCTCAGC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	3 cut(s)	208, 525, 641
BceAI	ACGGC	2 cut(s)	385, 463
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciT130I	CCWGG	4 cut(s)	204, 317, 690, 723
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	90, 240
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	67, 313, 446
BlsI	GCNGC	3 cut(s)	68, 314, 447
Bme1390I	CCNGG	5 cut(s)	112, 204, 317, 690, 723
Bme18I	GGWCC	4 cut(s)	319, 338, 626, 725
BmgT120I	GGNCC	7 cut(s)	7, 68, 319, 338, 392, 626, 725
BmiI	GGNNCC	3 cut(s)	456, 499, 509
BmrFI	CCNGG	5 cut(s)	112, 204, 317, 690, 723
BmsI	GCATC	5 cut(s)	10, 401, 432, 545, 589
BoxI	GACNNNNGTC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	2 cut(s)	279, 505
Bpu10I	CCTNAGC	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	384, 549, 721
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	9 cut(s)	77, 111, 176, 206, 368, 385, 389, 390, 830
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	2 cut(s)	170, 488
BseBI	CCWGG	4 cut(s)	204, 317, 690, 723
BseDI	CCNNGG	3 cut(s)	384, 549, 721
BseGI	GGATG	2 cut(s)	280, 560
BseLI	CCNNNNNNNGG	9 cut(s)	77, 111, 176, 206, 368, 385, 389, 390, 830
BseMII	CTCAG	2 cut(s)	149, 464
BseNI	ACTGG	2 cut(s)	170, 488
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	8 cut(s)	8, 69, 169, 315, 394, 478, 697, 739
BshNI	GGYRCC	2 cut(s)	454, 497
BsiSI	CCGG	5 cut(s)	78, 112, 395, 495, 812
BsiWI	CGTACG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	9 cut(s)	77, 111, 176, 206, 368, 385, 389, 390, 830
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	8 cut(s)	8, 69, 169, 315, 394, 478, 697, 739
Bsp119I	TTCGAA	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	674
BspACI	CCGC	5 cut(s)	66, 243, 267, 312, 779
BspANI	GGCC	8 cut(s)	8, 69, 169, 315, 394, 478, 697, 739
BspCNI	CTCAG	2 cut(s)	150, 465
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	456, 499, 509
BspMI	ACCTGC	1 cut(s)	316
BspT104I	TTCGAA	1 cut(s)	183
BspT107I	GGYRCC	2 cut(s)	454, 497
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	2 cut(s)	170, 488
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	384, 549, 721
BssMI	GATC	1 cut(s)	674
BssNI	GRCGYC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	4 cut(s)	204, 317, 690, 723
Bst4CI	ACNGT	6 cut(s)	44, 284, 439, 550, 626, 819
Bst6I	CTCTTC	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	605
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	6, 265, 374, 695
BstDEI	CTNAG	2 cut(s)	158, 473
BstDSI	CCRYGG	1 cut(s)	549
BstEII	GGTNACC	2 cut(s)	716, 819
BstF5I	GGATG	2 cut(s)	280, 560
BstKTI	GATC	1 cut(s)	677
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	674
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	4 cut(s)	204, 317, 690, 723
BstNSI	RCATGY	1 cut(s)	267
BstPAI	GACNNNNGTC	1 cut(s)	402
BstPI	GGTNACC	2 cut(s)	716, 819
BstSCI	CCNGG	5 cut(s)	110, 202, 315, 688, 721
BstV1I	GCAGC	1 cut(s)	457
BsuRI	GGCC	8 cut(s)	8, 69, 169, 315, 394, 478, 697, 739
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	280, 560
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	4 cut(s)	6, 265, 374, 695
CciI	TCATGA	1 cut(s)	654
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	7 cut(s)	7, 68, 319, 338, 392, 626, 725
Csp6I	GTAC	4 cut(s)	481, 498, 606, 622
CviAII	CATG	3 cut(s)	264, 433, 655
CviQI	GTAC	4 cut(s)	481, 498, 606, 622
DdeI	CTNAG	2 cut(s)	158, 473
DpnI	GATC	1 cut(s)	676
DpnII	GATC	1 cut(s)	674
EaeI	YGGCCR	2 cut(s)	167, 313
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	697
Eco47I	GGWCC	4 cut(s)	319, 338, 626, 725
Eco57I	CTGAAG	1 cut(s)	369
Eco91I	GGTNACC	2 cut(s)	716, 819
EcoO65I	GGTNACC	2 cut(s)	716, 819
EcoRII	CCWGG	4 cut(s)	202, 315, 688, 721
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	267, 436, 658
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	3 cut(s)	263, 432, 654
FauI	CCCGC	2 cut(s)	236, 772
FauNDI	CATATG	1 cut(s)	749
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	67, 313, 446
FokI	GGATG	2 cut(s)	287, 567
Fsp4HI	GCNGC	3 cut(s)	67, 313, 446
FspBI	CTAG	2 cut(s)	90, 240
GluI	GCNGC	3 cut(s)	67, 313, 446
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	279, 505
HaeIII	GGCC	8 cut(s)	8, 69, 169, 315, 394, 478, 697, 739
HapII	CCGG	5 cut(s)	78, 112, 395, 495, 812
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	3 cut(s)	267, 436, 658
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	3 cut(s)	218, 685, 788
HpaII	CCGG	5 cut(s)	78, 112, 395, 495, 812
HphI	GGTGA	5 cut(s)	281, 296, 451, 589, 813
Hpy166II	GTNNAC	3 cut(s)	280, 538, 592
Hpy188I	TCNGA	4 cut(s)	159, 236, 349, 679
Hpy188III	TCNNGA	3 cut(s)	466, 655, 672
Hpy8I	GTNNAC	3 cut(s)	280, 538, 592
HpyAV	CCTTC	5 cut(s)	20, 383, 419, 802, 824
HpyCH4III	ACNGT	6 cut(s)	44, 284, 439, 550, 626, 819
HpyCH4IV	ACGT	2 cut(s)	154, 604
HpyCH4V	TGCA	9 cut(s)	23, 190, 445, 519, 558, 572, 602, 765, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	2 cut(s)	158, 473
HpySE526I	ACGT	2 cut(s)	154, 604
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	267, 436, 658
KpnI	GGTACC	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	674
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	5 cut(s)	10, 401, 432, 545, 589
MaeI	CTAG	2 cut(s)	90, 240
MaeII	ACGT	2 cut(s)	154, 604
MaeIII	GTNAC	3 cut(s)	302, 716, 819
MalI	GATC	1 cut(s)	676
MboI	GATC	1 cut(s)	674
MboII	GAAGA	2 cut(s)	111, 362
MfeI	CAATTG	1 cut(s)	24
MluCI	AATT	5 cut(s)	24, 185, 631, 680, 743
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	84, 220
MnlI	CCTC	8 cut(s)	200, 265, 390, 426, 462, 468, 480, 623
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	5 cut(s)	78, 112, 395, 495, 812
MspR9I	CCNGG	5 cut(s)	112, 204, 317, 690, 723
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	4 cut(s)	204, 317, 690, 723
MwoI	GCNNNNNNNGC	1 cut(s)	454
NciI	CCSGG	1 cut(s)	112
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	1 cut(s)	674
NlaIII	CATG	3 cut(s)	267, 436, 658
NlaIV	GGNNCC	3 cut(s)	456, 499, 509
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	2 cut(s)	302, 819
NspI	RCATGY	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	685, 788
Pfl23II	CGTACG	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	68, 314, 447
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	605
PshAI	GACNNNNGTC	1 cut(s)	402
Psp6I	CCWGG	4 cut(s)	202, 315, 688, 721
PspEI	GGTNACC	2 cut(s)	716, 819
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	4 cut(s)	202, 315, 688, 721
PspLI	CGTACG	1 cut(s)	605
PspN4I	GGNNCC	3 cut(s)	456, 499, 509
PspPI	GGNCC	7 cut(s)	7, 68, 319, 338, 392, 626, 725
RsaI	GTAC	4 cut(s)	482, 499, 607, 623
RsaNI	GTAC	4 cut(s)	481, 498, 606, 622
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	67, 313, 446
Sau3AI	GATC	1 cut(s)	674
Sau96I	GGNCC	7 cut(s)	7, 68, 319, 338, 392, 626, 725
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	5 cut(s)	112, 204, 317, 690, 723
SfaNI	GCATC	5 cut(s)	10, 401, 432, 545, 589
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	4 cut(s)	319, 338, 626, 725
SmiMI	CAYNNNNRTG	1 cut(s)	437
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	5 cut(s)	24, 185, 631, 680, 743
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	5 cut(s)	66, 243, 267, 312, 779
SspMI	CTAG	2 cut(s)	90, 240
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	5 cut(s)	110, 202, 315, 688, 721
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	6 cut(s)	44, 284, 439, 550, 626, 819
TaiI	ACGT	2 cut(s)	157, 607
TaqI	TCGA	1 cut(s)	183
TasI	AATT	5 cut(s)	24, 185, 631, 680, 743
TauI	GCSGC	2 cut(s)	69, 315
TfiI	GAWTC	2 cut(s)	685, 788
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	2 cut(s)	302, 819
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	2 cut(s)	302, 819
TspDTI	ATGAA	3 cut(s)	643, 736, 819
VpaK11BI	GGWCC	4 cut(s)	319, 338, 626, 725
XceI	RCATGY	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	747
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	2 cut(s)	90, 240
ZraI	GACGTC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.