Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Reverse (-)

32100053 .. 32100725

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG182600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCCATCCCACATTCATCTTTTTAGGGTTTCGACGTTCCCTGCTGCTTACATCCCTTACTCCACCCTCTCGCTTTTCGAAGACACCATGAACATGACCAATCCCCTTCCAGTAGGCAACTGTGGAACCCCCATGCAGGATGAGCCGCTAGAGGTCCCTCTGGCTCCTCCGAACTCACCGACTGGTGTGGTGGAAGTCCATGCTCATCCTCCGTTTCCTCTTCATGCAGACGATCCGACCAATCCATTTTGGAACCTCAACCTCGATGAAGAACTGGAGAGTGTTGCCTATGATGGATATTTTGACAATCCTGTATCCCCAACTTCAGCTATGGAGTATGCTTTCTTTGATCAATATGACACCTTCCTTGATAGTAATCTTCAAACTGATTACTTTCGAGTGGAAGACTTTTTTGTTGATGACGACGACGATCCTGGGTTGGATGATGATGGTCCGGTGACCTCTGATGCTGAAACGGATGTCAATGCTCTTGAGTTTCATGATGCTGCTCACGAAGATGTGCTAACCGGTGATGTTATGGATGATACCCCTCCTGCTGCTGCTGATTCAGATGGTAACCACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.54

Weight (kDa)

4.05

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	2 cut(s)	227, 425
AcuI	CTGAAG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
AlwI	GGATC	2 cut(s)	227, 425
ApeKI	GCWGC	4 cut(s)	44, 506, 557, 560
AsiGI	ACCGGT	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	154, 452
AsuHPI	GGTGA	3 cut(s)	168, 469, 542
AsuII	TTCGAA	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	154, 452
BbsI	GAAGAC	2 cut(s)	87, 411
BbvI	GCAGC	4 cut(s)	31, 493, 544, 547
BccI	CCATC	4 cut(s)	13, 287, 443, 566
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	325
BclI	TGATCA	1 cut(s)	349
BfaI	CTAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	5 cut(s)	45, 146, 507, 558, 561
BlsI	GCNGC	5 cut(s)	46, 147, 508, 559, 562
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	2 cut(s)	154, 452
BmgT120I	GGNCC	2 cut(s)	154, 452
BmiI	GGNNCC	4 cut(s)	127, 156, 165, 254
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	457, 493
BpiI	GAAGAC	2 cut(s)	87, 411
BpmI	CTGGAG	1 cut(s)	296
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	2 cut(s)	454, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	3 cut(s)	110, 187, 279
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	7 cut(s)	5, 51, 145, 205, 448, 484, 547
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	3 cut(s)	110, 187, 279
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	31, 493, 544, 547
BshTI	ACCGGT	1 cut(s)	527
BsiSI	CCGG	2 cut(s)	455, 528
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	232, 349, 430
BspACI	CCGC	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	4 cut(s)	127, 156, 165, 254
BspPI	GGATC	2 cut(s)	227, 425
BspT104I	TTCGAA	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	3 cut(s)	110, 187, 279
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	3 cut(s)	232, 349, 430
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	78
BstEII	GGTNACC	2 cut(s)	457, 575
BstF5I	GGATG	7 cut(s)	5, 51, 145, 205, 448, 484, 547
BstKTI	GATC	3 cut(s)	235, 352, 433
BstMBI	GATC	3 cut(s)	232, 349, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	435
BstPI	GGTNACC	2 cut(s)	457, 575
BstSCI	CCNGG	1 cut(s)	433
BstV1I	GCAGC	4 cut(s)	31, 493, 544, 547
BstV2I	GAAGAC	2 cut(s)	87, 411
BsuI	GTATCC	1 cut(s)	325
BtsCI	GGATG	7 cut(s)	5, 51, 145, 205, 448, 484, 547
CciI	TCATGA	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	154, 452
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	6 cut(s)	88, 94, 133, 200, 224, 500
CviJI	RGCY	3 cut(s)	145, 164, 329
CviKI_1	RGCY	3 cut(s)	145, 164, 329
DpnI	GATC	3 cut(s)	234, 351, 432
DpnII	GATC	3 cut(s)	232, 349, 430
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	154, 452
Eco57I	CTGAAG	1 cut(s)	309
Eco91I	GGTNACC	2 cut(s)	457, 575
EcoO109I	RGGNCCY	1 cut(s)	154
EcoO65I	GGTNACC	2 cut(s)	457, 575
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	6 cut(s)	91, 97, 136, 203, 227, 503
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	6 cut(s)	87, 93, 132, 199, 223, 499
FauNDI	CATATG	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	5 cut(s)	45, 146, 507, 558, 561
FokI	GGATG	6 cut(s)	38, 152, 192, 455, 491, 554
Fsp4HI	GCNGC	5 cut(s)	45, 146, 507, 558, 561
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	5 cut(s)	45, 146, 507, 558, 561
GsuI	CTGGAG	1 cut(s)	296
HapII	CCGG	2 cut(s)	455, 528
Hin1II	CATG	6 cut(s)	91, 97, 136, 203, 227, 503
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	2 cut(s)	455, 528
HphI	GGTGA	3 cut(s)	168, 469, 542
Hpy188I	TCNGA	4 cut(s)	171, 237, 466, 571
Hpy188III	TCNNGA	3 cut(s)	491, 500, 512
Hpy99I	CGWCG	3 cut(s)	37, 428, 431
HpyAV	CCTTC	2 cut(s)	116, 373
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	136, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	6 cut(s)	91, 97, 136, 203, 227, 503
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	232, 349, 430
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	4 cut(s)	31, 493, 544, 547
LweI	GCATC	2 cut(s)	457, 493
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	457, 575
MalI	GATC	3 cut(s)	234, 351, 432
MboI	GATC	3 cut(s)	232, 349, 430
MboII	GAAGA	6 cut(s)	92, 212, 281, 371, 416, 527
MmeI	TCCRAC	2 cut(s)	260, 420
MslI	CAYNNNNRTG	2 cut(s)	92, 516
MspI	CCGG	2 cut(s)	455, 528
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	3 cut(s)	232, 349, 430
NlaIII	CATG	6 cut(s)	91, 97, 136, 203, 227, 503
NlaIV	GGNNCC	4 cut(s)	127, 156, 165, 254
NmuCI	GTSAC	1 cut(s)	457
NspV	TTCGAA	1 cut(s)	78
PagI	TCATGA	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	566
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	46, 147, 508, 559, 562
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	433
PspEI	GGTNACC	2 cut(s)	457, 575
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	127, 156, 165, 254
PspPI	GGNCC	2 cut(s)	154, 452
PspPPI	RGGWCCY	1 cut(s)	154
RseI	CAYNNNNRTG	2 cut(s)	92, 516
SatI	GCNGC	5 cut(s)	45, 146, 507, 558, 561
Sau3AI	GATC	3 cut(s)	232, 349, 430
Sau96I	GGNCC	2 cut(s)	154, 452
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	7 cut(s)	38, 156, 258, 264, 331, 365, 464
SfaNI	GCATC	2 cut(s)	457, 493
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	2 cut(s)	154, 452
SmiMI	CAYNNNNRTG	2 cut(s)	92, 516
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	32, 78, 264, 397
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	4 cut(s)	44, 506, 557, 560
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	5 cut(s)	5, 104, 212, 282, 488
TspGWI	ACGGA	2 cut(s)	201, 491
VpaK11BI	GGWCC	2 cut(s)	154, 452
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.