Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Forward (+)

27382387 .. 27383359

Gene Structure 973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG239800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTCGTCGTCATGATGGACACTTAACATTCTGTCCAAATCACATAAACAGGTTGAATACTGCTGGAGCATGCGGTGAGGATGTCAACTGTCCTATTCAAAGGTGGTGTCACCTATGCGGCCAGGTCCAGCAGGTAGTTAAAGGACCACGCTCTGAAGAATGCCCACCTTTTGACGGCAAGCACCCTCCCAAGGAAGGGCCGGACGAAAGTCCCCGATGCCCTCTCTGTGAAGGGAACATGACGGTGATGCAGCATTGGGTGCCTGAAATCAAGAGGCTGAGGCCGTACTGGAGGTGTGCCGGTACCAACGGGTTCCCATATTGCAGGGGGTATAGATGGGTGGACGAGATGACCGTGGGATGCACCGAGCATAATGCAGGGGACATTGATGCACGTACGAACCTCACAATGTACGGTCCTAATTGTGAAGTGTGTGATGGCTTCATGATGTCGTTTATATCACGATCTGAATTGAATCCAGGCAGGCCTTATTGGTTCTGCTATGGTTACCCTGGTCCAATCCACAGGCCACAATTCATATGGGGAGATGAGTGTAAAATACATTTTGTGGGATTTGATTCCTTCACTCAATATGAAGTTCCGGCACGGTCACCACAGGAAGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.98

Weight (kDa)

6.29

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	262, 305
AciI	CCGC	2 cut(s)	75, 120
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	4 cut(s)	290, 307, 400, 416
AfiI	CCNNNNNNNGG	5 cut(s)	176, 193, 197, 198, 623
AgsI	TTSAA	3 cut(s)	58, 101, 478
AjnI	CCWGG	3 cut(s)	123, 481, 514
AoxI	GGCC	5 cut(s)	121, 200, 284, 488, 530
ApeKI	GCWGC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
Asp718I	GGTACC	1 cut(s)	305
AspS9I	GGNCC	5 cut(s)	127, 146, 200, 419, 518
AsuHPI	GGTGA	4 cut(s)	89, 104, 259, 606
AvaII	GGWCC	4 cut(s)	127, 146, 419, 518
BanI	GGYRCC	2 cut(s)	262, 305
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	11, 333, 434
BceAI	ACGGC	2 cut(s)	193, 271
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	3 cut(s)	125, 483, 516
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	2 cut(s)	121, 254
BlsI	GCNGC	2 cut(s)	122, 255
Bme1390I	CCNGG	3 cut(s)	125, 483, 516
Bme18I	GGWCC	4 cut(s)	127, 146, 419, 518
BmgT120I	GGNCC	5 cut(s)	127, 146, 200, 419, 518
BmiI	GGNNCC	3 cut(s)	264, 307, 317
BmrFI	CCNGG	3 cut(s)	125, 483, 516
BmsI	GCATC	4 cut(s)	209, 240, 353, 382
BoxI	GACNNNNGTC	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	87, 313
Bpu10I	CCTNAGC	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	192, 357, 514
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 193, 197, 198, 623
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	3 cut(s)	125, 483, 516
BseDI	CCNNGG	3 cut(s)	192, 357, 514
BseGI	GGATG	2 cut(s)	88, 368
BseLI	CCNNNNNNNGG	5 cut(s)	176, 193, 197, 198, 623
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	5 cut(s)	123, 202, 286, 490, 532
BshNI	GGYRCC	2 cut(s)	262, 305
BsiSI	CCGG	3 cut(s)	203, 303, 605
BsiWI	CGTACG	1 cut(s)	398
BslFI	GGGAC	2 cut(s)	198, 398
BslI	CCNNNNNNNGG	5 cut(s)	176, 193, 197, 198, 623
BsmFI	GGGAC	2 cut(s)	198, 398
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	5 cut(s)	123, 202, 286, 490, 532
Bsp143I	GATC	1 cut(s)	467
BspACI	CCGC	2 cut(s)	75, 120
BspANI	GGCC	5 cut(s)	123, 202, 286, 490, 532
BspCNI	CTCAG	1 cut(s)	273
BspHI	TCATGA	2 cut(s)	13, 447
BspLI	GGNNCC	3 cut(s)	264, 307, 317
BspMI	ACCTGC	1 cut(s)	124
BspT107I	GGYRCC	2 cut(s)	262, 305
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	192, 357, 514
BssMI	GATC	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	125, 483, 516
Bst4CI	ACNGT	5 cut(s)	92, 247, 358, 419, 612
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	73, 182, 488
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	357
BstEII	GGTNACC	2 cut(s)	509, 612
BstF5I	GGATG	2 cut(s)	88, 368
BstKTI	GATC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	3 cut(s)	125, 483, 516
BstNSI	RCATGY	1 cut(s)	75
BstPAI	GACNNNNGTC	1 cut(s)	210
BstPI	GGTNACC	2 cut(s)	509, 612
BstSCI	CCNGG	3 cut(s)	123, 481, 514
BstV1I	GCAGC	1 cut(s)	265
BsuRI	GGCC	5 cut(s)	123, 202, 286, 490, 532
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	88, 368
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	73, 182, 488
CciI	TCATGA	2 cut(s)	13, 447
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	5 cut(s)	127, 146, 200, 419, 518
Csp6I	GTAC	4 cut(s)	289, 306, 399, 415
CviAII	CATG	4 cut(s)	14, 72, 241, 448
CviJI	RGCY	7 cut(s)	123, 202, 280, 286, 444, 490, 532
CviKI_1	RGCY	7 cut(s)	123, 202, 280, 286, 444, 490, 532
CviQI	GTAC	4 cut(s)	289, 306, 399, 415
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	469
DpnII	GATC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	490
Eco47I	GGWCC	4 cut(s)	127, 146, 419, 518
Eco57I	CTGAAG	1 cut(s)	177
Eco91I	GGTNACC	2 cut(s)	509, 612
EcoO65I	GGTNACC	2 cut(s)	509, 612
EcoRII	CCWGG	3 cut(s)	123, 481, 514
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	17, 75, 244, 451
FaqI	GGGAC	2 cut(s)	198, 398
FatI	CATG	4 cut(s)	13, 71, 240, 447
FauNDI	CATATG	1 cut(s)	542
Fnu4HI	GCNGC	2 cut(s)	121, 254
FokI	GGATG	2 cut(s)	95, 375
Fsp4HI	GCNGC	2 cut(s)	121, 254
GluI	GCNGC	2 cut(s)	121, 254
GsuI	CTGGAG	2 cut(s)	87, 313
HaeIII	GGCC	5 cut(s)	123, 202, 286, 490, 532
HapII	CCGG	3 cut(s)	203, 303, 605
Hin1II	CATG	4 cut(s)	17, 75, 244, 451
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	478, 581
HpaII	CCGG	3 cut(s)	203, 303, 605
HphI	GGTGA	4 cut(s)	89, 104, 259, 606
Hpy166II	GTNNAC	2 cut(s)	88, 346
Hpy188I	TCNGA	2 cut(s)	157, 472
Hpy188III	TCNNGA	4 cut(s)	14, 274, 448, 465
Hpy8I	GTNNAC	2 cut(s)	88, 346
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	191, 227, 595, 617
HpyCH4III	ACNGT	5 cut(s)	92, 247, 358, 419, 612
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	6 cut(s)	253, 327, 366, 380, 395, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	4 cut(s)	17, 75, 244, 451
KpnI	GGTACC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	4 cut(s)	209, 240, 353, 382
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	3 cut(s)	110, 509, 612
MalI	GATC	1 cut(s)	469
MboI	GATC	1 cut(s)	467
MboII	GAAGA	1 cut(s)	170
MluCI	AATT	3 cut(s)	424, 473, 536
MnlI	CCTC	7 cut(s)	73, 198, 234, 270, 276, 288, 416
MseI	TTAA	2 cut(s)	26, 141
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	3 cut(s)	203, 303, 605
MspR9I	CCNGG	3 cut(s)	125, 483, 516
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	3 cut(s)	125, 483, 516
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeI	CATATG	1 cut(s)	542
NdeII	GATC	1 cut(s)	467
NlaIII	CATG	4 cut(s)	17, 75, 244, 451
NlaIV	GGNNCC	3 cut(s)	264, 307, 317
NmuCI	GTSAC	2 cut(s)	110, 612
NspI	RCATGY	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	75
PagI	TCATGA	2 cut(s)	13, 447
PceI	AGGCCT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	478, 581
Pfl23II	CGTACG	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	122, 255
Ppu21I	YACGTR	1 cut(s)	398
PshAI	GACNNNNGTC	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	123, 481, 514
PspEI	GGTNACC	2 cut(s)	509, 612
PspGI	CCWGG	3 cut(s)	123, 481, 514
PspLI	CGTACG	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	264, 307, 317
PspPI	GGNCC	5 cut(s)	127, 146, 200, 419, 518
RsaI	GTAC	4 cut(s)	290, 307, 400, 416
RsaNI	GTAC	4 cut(s)	289, 306, 399, 415
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	26, 141
SatI	GCNGC	2 cut(s)	121, 254
Sau3AI	GATC	1 cut(s)	467
Sau96I	GGNCC	5 cut(s)	127, 146, 200, 419, 518
ScrFI	CCNGG	3 cut(s)	125, 483, 516
SfaNI	GCATC	4 cut(s)	209, 240, 353, 382
SinI	GGWCC	4 cut(s)	127, 146, 419, 518
SmiMI	CAYNNNNRTG	1 cut(s)	245
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	3 cut(s)	424, 473, 536
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	2 cut(s)	75, 120
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	3 cut(s)	123, 481, 514
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	5 cut(s)	92, 247, 358, 419, 612
TaiI	ACGT	1 cut(s)	400
TasI	AATT	3 cut(s)	424, 473, 536
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	478, 581
Tru1I	TTAA	2 cut(s)	26, 141
Tru9I	TTAA	2 cut(s)	26, 141
TseFI	GTSAC	2 cut(s)	110, 612
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	2 cut(s)	110, 612
TspDTI	ATGAA	3 cut(s)	436, 529, 612
VpaK11BI	GGWCC	4 cut(s)	127, 146, 419, 518
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.