Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Reverse (-)

46578794 .. 46585958

Gene Structure 7165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG370700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAACATGAGCAATCTCCTTCCATTAGGCAACTGTGGAACCCCCATGCAGGATGAGCCGCCCAAGGTCCATCCGGCTCCTCCGAACTCACCTACTGGTATGGTGGAAGTCCATGCTTATCCTCCTTTTCCTCTTCATGCAGACGATCTGAAAAATCCATTTCGTAGCCGCAACGTCGAAGAAGAACTGGCAGCATGGGAAAGTTCATCTCCAACAGTGTGCACACCGGAGGATAGATCAGCCCTACTAGTGTCTGAGGAAGATTTATTGTACTTAACGGAGTACCACCGGCACTATTCGGCTGAGAAGTTATACGGCCTTACTGATGAAGAGGAAGAATTGGCAGATGCATTCGATCGGTACATATTCCAGAAGAAGAGGGAGGCAGGGATAAAAGCTATAGATAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.47

Weight (kDa)

4.64

Isoelectric Point (pI)

71.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 169
AfaI	GTAC	3 cut(s)	272, 284, 362
AfiI	CCNNNNNNNGG	1 cut(s)	49
AhlI	ACTAGT	1 cut(s)	247
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw21I	GWGCWC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	331
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	3 cut(s)	59, 169, 192
BlsI	GCNGC	3 cut(s)	60, 170, 193
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	40, 78
BmsI	GCATC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	100, 192
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	58, 70
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	246, 294
BseNI	ACTGG	2 cut(s)	100, 192
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	74, 227, 289
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	145, 236, 355
BspACI	CCGC	2 cut(s)	59, 169
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	247, 295
BspLI	GGNNCC	2 cut(s)	40, 78
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	100, 192
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	145, 236, 355
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	35, 217
Bst6I	CTCTTC	3 cut(s)	138, 324, 371
BstDEI	CTNAG	2 cut(s)	255, 303
BstF5I	GGATG	2 cut(s)	58, 70
BstKTI	GATC	3 cut(s)	148, 239, 358
BstMBI	GATC	3 cut(s)	145, 236, 355
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	58, 70
BtsIMutI	CAGTG	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	271, 283, 361
CviAII	CATG	5 cut(s)	7, 46, 113, 137, 195
CviJI	RGCY	7 cut(s)	58, 77, 168, 242, 302, 318, 398
CviKI_1	RGCY	7 cut(s)	58, 77, 168, 242, 302, 318, 398
CviQI	GTAC	3 cut(s)	271, 283, 361
DdeI	CTNAG	2 cut(s)	255, 303
DpnI	GATC	3 cut(s)	147, 238, 357
DpnII	GATC	3 cut(s)	145, 236, 355
Eam1104I	CTCTTC	3 cut(s)	138, 324, 371
EarI	CTCTTC	3 cut(s)	138, 324, 371
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	5 cut(s)	10, 49, 116, 140, 198
FaiI	YATR	9 cut(s)	8, 47, 101, 114, 138, 196, 313, 365, 401
FatI	CATG	5 cut(s)	6, 45, 112, 136, 194
Fnu4HI	GCNGC	3 cut(s)	59, 169, 192
FokI	GGATG	2 cut(s)	57, 65
Fsp4HI	GCNGC	3 cut(s)	59, 169, 192
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	3 cut(s)	59, 169, 192
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	3 cut(s)	74, 227, 289
Hin1II	CATG	5 cut(s)	10, 49, 116, 140, 198
HpaII	CCGG	3 cut(s)	74, 227, 289
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	84, 150, 256
Hpy188III	TCNNGA	2 cut(s)	370, 411
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	35, 217
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	49, 140, 222, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	255, 303
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	10, 49, 116, 140, 198
Kzo9I	GATC	3 cut(s)	145, 236, 355
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	35, 81, 87, 173, 240, 302, 372, 383
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	174
MalI	GATC	3 cut(s)	147, 238, 357
MboI	GATC	3 cut(s)	145, 236, 355
MboII	GAAGA	8 cut(s)	125, 191, 194, 272, 341, 347, 385, 388
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	2 cut(s)	338, 406
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	8 cut(s)	90, 132, 141, 223, 250, 325, 372, 376
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	1 cut(s)	275
MspI	CCGG	3 cut(s)	74, 227, 289
Mva1269I	GAATGC	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	3 cut(s)	145, 236, 355
NlaIII	CATG	5 cut(s)	10, 49, 116, 140, 198
NlaIV	GGNNCC	2 cut(s)	40, 78
NsiI	ATGCAT	1 cut(s)	352
PctI	GAATGC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	60, 170, 193
Ple19I	CGATCG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	40, 78
PspPI	GGNCC	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	272, 284, 362
RsaNI	GTAC	3 cut(s)	271, 283, 361
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	59, 169, 192
Sau3AI	GATC	3 cut(s)	145, 236, 355
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	4 cut(s)	69, 94, 177, 400
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	67
SpeI	ACTAGT	1 cut(s)	247
Sse9I	AATT	2 cut(s)	338, 406
SsiI	CCGC	2 cut(s)	59, 169
SspMI	CTAG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	35, 217
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	177, 354
TasI	AATT	2 cut(s)	338, 406
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	2 cut(s)	61, 171
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	17, 125, 195, 342
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	222
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	67
XspI	CTAG	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.