Rh6DG498600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004259
Physical Location & Seq
Reverse (-)
65564219 .. 65565931
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG498600.1

Sequence Viewer

Length: 924 bp
ATGAAAAATAAATCACATGGATTTATGGGGAAAATCGAACCAGTGTCCATTCAAGTATATGCCTACCGGCTCACCACTTTCTCTACATTAGGTCCCACTGGCAGGGTGGTATGTTGGACCAACTTTCAGTGGGCTGGACACCGTAATAAAGCCTATTCCAACTGCGGCCCAAACACCGGAACAAACCCTAGTATAAATGTCTCCCGTTCCCGGAACTCTTCTCTTTTCAGCCACGGAAAACAAGCAAACAGACGTCTGAGCGACTCGCCGACCACAGGGTTCGAATTGCAAATCCAACCACCAGGAGGGGAGATGGACTCGGCTGGGAACATCAGAACTAGCGGGTTGAATACTGCGGGAGCATGCGGTGAGGATGTCAACTGTCCTATTCAAAGGTGGTGTCACCTATGCGGCCAGGTCCAGCAGGTAGTTAAAGGACCACGCTCTGAAGAATGCCCACCTTTTGACGGCAAGCACCCTCCCAAGGAAGGGCCGGACGAAAGTCCCCGATGCCCTCTCTGTGAAGGGAACATGACGGTGATGCAGCATTGGGTGCCTGAAATCAAGAAGCTGAGGCCGTACTGGAGGTGTGCCGGTACCAACGGGTTCCCATATTGCAGGGGGTATAGATGGGTGGACGAGATGACCGTGGGATGCACCGAGCATAATGCAGGGGACATTTATGCACCTCTGAACCTCACAATGTACAGTCCTAATTGTGAAGTGTGTGATGGCTTCATGATGTCGTTTATATCACGATCTGAATTGAATCCAGGCAGGCCTTATTGGTTCTGCTATGGTTACCCTGGTCCAATCCACAGGCCACAATTCATATGGGGAGATGAGTGCAAAATACATTTTGCAGGATTTGATTCCTTGACTGAATATGAAGTTCCGGCACGGTCACCACAGGAAGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.31

Weight (kDa)

7.86

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 415
Acc65I GGTACC 1 cut(s) 596
AccB1I GGYRCC 2 cut(s) 553, 596
AciI CCGC 5 cut(s) 165, 342, 356, 366, 411
AcoI YGGCCR 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 468
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 3 cut(s) 581, 598, 707
AgsI TTSAA 4 cut(s) 53, 349, 392, 769
AjnI CCWGG 4 cut(s) 301, 414, 772, 805
AluBI AGCT 1 cut(s) 571
AluI AGCT 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 205
AoxI GGCC 6 cut(s) 166, 412, 491, 575, 779, 821
ApeKI GCWGC 1 cut(s) 544
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
Asp718I GGTACC 1 cut(s) 596
AspS9I GGNCC 7 cut(s) 92, 117, 167, 418, 437, 491, 809
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 5 cut(s) 64, 380, 395, 550, 897
AsuII TTCGAA 1 cut(s) 282
AvaII GGWCC 5 cut(s) 92, 117, 418, 437, 809
BanI GGYRCC 2 cut(s) 553, 596
BbvCI CCTCAGC 1 cut(s) 572
BbvI GCAGC 1 cut(s) 556
BccI CCATC 3 cut(s) 307, 624, 725
BceAI ACGGC 2 cut(s) 484, 562
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 4 cut(s) 303, 416, 774, 807
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 189, 339
BfuAI ACCTGC 1 cut(s) 415
BisI GCNGC 3 cut(s) 166, 412, 545
BlsI GCNGC 3 cut(s) 167, 413, 546
Bme1390I CCNGG 5 cut(s) 211, 303, 416, 774, 807
Bme18I GGWCC 5 cut(s) 92, 117, 418, 437, 809
BmgT120I GGNCC 7 cut(s) 92, 117, 167, 418, 437, 491, 809
BmiI GGNNCC 4 cut(s) 94, 555, 598, 608
BmrFI CCNGG 5 cut(s) 211, 303, 416, 774, 807
BmsI GCATC 3 cut(s) 500, 531, 644
BoxI GACNNNNGTC 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 604
Bpu10I CCTNAGC 1 cut(s) 572
Bpu14I TTCGAA 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 4 cut(s) 232, 483, 648, 805
BsaWI WCCGGW 1 cut(s) 176
Bse118I RCCGGY 2 cut(s) 66, 593
Bse1I ACTGG 3 cut(s) 41, 103, 587
BseBI CCWGG 4 cut(s) 303, 416, 774, 807
BseDI CCNNGG 4 cut(s) 232, 483, 648, 805
BseGI GGATG 2 cut(s) 379, 659
BseMII CTCAG 2 cut(s) 248, 563
BseNI ACTGG 3 cut(s) 41, 103, 587
BseXI GCAGC 1 cut(s) 556
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 6 cut(s) 168, 414, 493, 577, 781, 823
BshNI GGYRCC 2 cut(s) 553, 596
BsiSI CCGG 6 cut(s) 67, 177, 211, 494, 594, 896
BslFI GGGAC 3 cut(s) 78, 489, 689
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 3 cut(s) 78, 489, 689
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 6 cut(s) 168, 414, 493, 577, 781, 823
Bsp119I TTCGAA 1 cut(s) 282
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 1 cut(s) 758
BspACI CCGC 5 cut(s) 165, 342, 356, 366, 411
BspANI GGCC 6 cut(s) 168, 414, 493, 577, 781, 823
BspCNI CTCAG 2 cut(s) 249, 564
BspHI TCATGA 1 cut(s) 738
BspLI GGNNCC 4 cut(s) 94, 555, 598, 608
BspMI ACCTGC 1 cut(s) 415
BspT104I TTCGAA 1 cut(s) 282
BspT107I GGYRCC 2 cut(s) 553, 596
BsrFI RCCGGY 2 cut(s) 66, 593
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 3 cut(s) 41, 103, 587
BssAI RCCGGY 2 cut(s) 66, 593
BssECI CCNNGG 4 cut(s) 232, 483, 648, 805
BssMI GATC 1 cut(s) 758
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 4 cut(s) 303, 416, 774, 807
Bst4CI ACNGT 6 cut(s) 143, 383, 538, 649, 710, 903
Bst6I CTCTTC 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 553
BstAUI TGTACA 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 364, 473, 779
BstDEI CTNAG 2 cut(s) 257, 572
BstDSI CCRYGG 2 cut(s) 232, 648
BstEII GGTNACC 2 cut(s) 800, 903
BstF5I GGATG 2 cut(s) 379, 659
BstKTI GATC 1 cut(s) 761
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 758
BstMWI GCNNNNNNNGC 1 cut(s) 553
BstNI CCWGG 4 cut(s) 303, 416, 774, 807
BstNSI RCATGY 1 cut(s) 366
BstPAI GACNNNNGTC 1 cut(s) 501
BstPI GGTNACC 2 cut(s) 800, 903
BstSCI CCNGG 5 cut(s) 209, 301, 414, 772, 805
BstV1I GCAGC 1 cut(s) 556
BsuRI GGCC 6 cut(s) 168, 414, 493, 577, 781, 823
BtgI CCRYGG 2 cut(s) 232, 648
BtsCI GGATG 2 cut(s) 379, 659
BtsIMutI CAGTG 3 cut(s) 48, 96, 134
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 3 cut(s) 364, 473, 779
CciI TCATGA 1 cut(s) 738
Cfr10I RCCGGY 2 cut(s) 66, 593
Cfr13I GGNCC 7 cut(s) 92, 117, 167, 418, 437, 491, 809
Csp6I GTAC 3 cut(s) 580, 597, 706
CviAII CATG 4 cut(s) 17, 363, 532, 739
CviQI GTAC 3 cut(s) 580, 597, 706
DdeI CTNAG 2 cut(s) 257, 572
DpnI GATC 1 cut(s) 760
DpnII GATC 1 cut(s) 758
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 781
Eco47I GGWCC 5 cut(s) 92, 117, 418, 437, 809
Eco57I CTGAAG 1 cut(s) 468
Eco91I GGTNACC 2 cut(s) 800, 903
EcoO109I RGGNCCY 1 cut(s) 92
EcoO65I GGTNACC 2 cut(s) 800, 903
EcoRII CCWGG 4 cut(s) 301, 414, 772, 805
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 4 cut(s) 20, 366, 535, 742
FaqI GGGAC 3 cut(s) 78, 489, 689
FatI CATG 4 cut(s) 16, 362, 531, 738
FauI CCCGC 2 cut(s) 335, 349
FauNDI CATATG 1 cut(s) 833
Fnu4HI GCNGC 3 cut(s) 166, 412, 545
FokI GGATG 2 cut(s) 386, 666
Fsp4HI GCNGC 3 cut(s) 166, 412, 545
FspBI CTAG 2 cut(s) 189, 339
GluI GCNGC 3 cut(s) 166, 412, 545
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 604
HaeIII GGCC 6 cut(s) 168, 414, 493, 577, 781, 823
HapII CCGG 6 cut(s) 67, 177, 211, 494, 594, 896
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 4 cut(s) 20, 366, 535, 742
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 4 cut(s) 263, 317, 769, 872
HpaII CCGG 6 cut(s) 67, 177, 211, 494, 594, 896
HphI GGTGA 5 cut(s) 64, 380, 395, 550, 897
Hpy166II GTNNAC 2 cut(s) 379, 637
Hpy188I TCNGA 5 cut(s) 258, 335, 448, 693, 763
Hpy188III TCNNGA 3 cut(s) 565, 739, 756
Hpy8I GTNNAC 2 cut(s) 379, 637
HpyAV CCTTC 3 cut(s) 482, 518, 908
HpyCH4III ACNGT 6 cut(s) 143, 383, 538, 649, 710, 903
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 9 cut(s) 289, 544, 618, 657, 671, 686, 849, 863, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 553
HpyF3I CTNAG 2 cut(s) 257, 572
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 4 cut(s) 20, 366, 535, 742
KpnI GGTACC 1 cut(s) 600
Kzo9I GATC 1 cut(s) 758
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 3 cut(s) 500, 531, 644
MaeI CTAG 2 cut(s) 189, 339
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 3 cut(s) 401, 800, 903
MalI GATC 1 cut(s) 760
MboI GATC 1 cut(s) 758
MboII GAAGA 2 cut(s) 210, 461
MluCI AATT 4 cut(s) 284, 715, 764, 827
MlyI GAGTC 2 cut(s) 257, 311
MmeI TCCRAC 3 cut(s) 95, 183, 319
MnlI CCTC 8 cut(s) 299, 364, 489, 525, 567, 579, 699, 707
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 6 cut(s) 67, 177, 211, 494, 594, 896
MspR9I CCNGG 5 cut(s) 211, 303, 416, 774, 807
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 4 cut(s) 303, 416, 774, 807
MwoI GCNNNNNNNGC 1 cut(s) 553
NciI CCSGG 1 cut(s) 211
NdeI CATATG 1 cut(s) 833
NdeII GATC 1 cut(s) 758
NlaIII CATG 4 cut(s) 20, 366, 535, 742
NlaIV GGNNCC 4 cut(s) 94, 555, 598, 608
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 2 cut(s) 401, 903
NspI RCATGY 1 cut(s) 366
NspV TTCGAA 1 cut(s) 282
PaeI GCATGC 1 cut(s) 366
PagI TCATGA 1 cut(s) 738
PceI AGGCCT 1 cut(s) 781
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 2 cut(s) 769, 872
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 3 cut(s) 167, 413, 546
PleI GAGTC 2 cut(s) 257, 311
PpsI GAGTC 2 cut(s) 257, 311
PpuMI RGGWCCY 1 cut(s) 92
PshAI GACNNNNGTC 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 4 cut(s) 301, 414, 772, 805
PspEI GGTNACC 2 cut(s) 800, 903
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 4 cut(s) 301, 414, 772, 805
PspN4I GGNNCC 4 cut(s) 94, 555, 598, 608
PspPI GGNCC 7 cut(s) 92, 117, 167, 418, 437, 491, 809
PspPPI RGGWCCY 1 cut(s) 92
RsaI GTAC 3 cut(s) 581, 598, 707
RsaNI GTAC 3 cut(s) 580, 597, 706
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 166, 412, 545
Sau3AI GATC 1 cut(s) 758
Sau96I GGNCC 7 cut(s) 92, 117, 167, 418, 437, 491, 809
SchI GAGTC 2 cut(s) 257, 311
ScrFI CCNGG 5 cut(s) 211, 303, 416, 774, 807
SfaNI GCATC 3 cut(s) 500, 531, 644
SfuI TTCGAA 1 cut(s) 282
SinI GGWCC 5 cut(s) 92, 117, 418, 437, 809
SmiMI CAYNNNNRTG 1 cut(s) 536
SphI GCATGC 1 cut(s) 366
Sse9I AATT 4 cut(s) 284, 715, 764, 827
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 5 cut(s) 165, 342, 356, 366, 411
SspMI CTAG 2 cut(s) 189, 339
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 5 cut(s) 209, 301, 414, 772, 805
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 6 cut(s) 143, 383, 538, 649, 710, 903
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 36, 282
TasI AATT 4 cut(s) 284, 715, 764, 827
TatI WGTACW 1 cut(s) 705
TauI GCSGC 2 cut(s) 168, 414
TfiI GAWTC 2 cut(s) 769, 872
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 3 cut(s) 48, 103, 134
TseFI GTSAC 2 cut(s) 401, 903
TseI GCWGC 1 cut(s) 544
Tsp45I GTSAC 2 cut(s) 401, 903
TspDTI ATGAA 4 cut(s) 17, 727, 820, 903
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 3 cut(s) 48, 103, 134
VpaK11BI GGWCC 5 cut(s) 92, 117, 418, 437, 809
XceI RCATGY 1 cut(s) 366
XcmI CCANNNNNNNNNTGG 2 cut(s) 103, 831
XspI CTAG 2 cut(s) 189, 339
ZraI GACGTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.