Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Forward (+)

86511921 .. 86515742

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG642600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAACATGAGGAATCCCCTTCCAGTAGGCAACTGTGGAACTCCCATGCAGTATGAGCCACCCGAGGTCCCTCCGGCTCCTTCGAACTCACCGACTGGTGCAGTGGAAGTCCATGCTCATCCTCCTTTTACTCTTCATGCAGACGATCCGACAAATCCATTTCGTAACCGCAACGTCGAAGAAGAACTGGAGGCTGTTGCCTATGGTGGATATTTTGAAAATCCTTTCTCCCCAACTTCACATATGGAGTATGCTTTCTTCGATCAATATGGCACCTTCCTTGATAGTAATCATGAAACTGATTACTTTCGCCTGCAAGACTTCTTTGTTGACGATGACGACGATCCAGGGTTGGATGATGATGATGAGGTGAAAGCTGATGGTGAAACGGAAGGCAGTACTATTGAGTTTCATGATGCTACTGATGAAGATGTGCCAACCGGTGATGCTATGGATGATACCCCTCCTGCTGCTGGTGATTCAGATGGTAACCGCGAAGATCCGGGTTTGCAGTGTTGTACTGAATTAGGACATTTATTTTCCTCGCCTGAAAGAATGTCGCAGACCGACGACAACTGCCCTCTTCAGAAATGGTGTCACTTGTGCTGTCAGATTCAGCCTTATGCGAGGGGACCTATGGCCGCAGAATGCCCACCTCGTGTAGGTGAACACCCTCGTCAAGCACCACCAGATGAGAGTCCGAGATGCCCTTTATGTGACGGGAACATGAGTATCATGGCATATTGGGTGCACAAAATAAAGAGGGAGCGACCCTATTGGCAGTGTTGTCGAACTAATGGGTACCCTTATTGCAGGGGTTATCGGTGGGTAGATGAGATGGCGGGAGGATCCACGGATGTGGATCTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

32.49

Weight (kDa)

4.27

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	801
AccB1I	GGYRCC	2 cut(s)	272, 801
AccII	CGCG	1 cut(s)	495
AciI	CCGC	4 cut(s)	169, 493, 642, 842
AclWI	GGATC	6 cut(s)	140, 338, 494, 843, 856, 870
AcoI	YGGCCR	1 cut(s)	639
AcuI	CTGAAG	1 cut(s)	569
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	3 cut(s)	400, 520, 803
AfiI	CCNNNNNNNGG	2 cut(s)	473, 662
AgeI	ACCGGT	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	346
AleI	CACNNNNGTG	1 cut(s)	857
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw21I	GWGCWC	1 cut(s)	753
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	6 cut(s)	140, 338, 494, 843, 856, 870
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	639
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	1 cut(s)	470
AsiGI	ACCGGT	1 cut(s)	440
Asp718I	GGTACC	1 cut(s)	801
AspS9I	GGNCC	2 cut(s)	67, 632
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	6 cut(s)	81, 382, 395, 455, 488, 677
AsuII	TTCGAA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	67, 632
BaeGI	GKGCMC	1 cut(s)	753
BaeI	ACNNNNGTAYC	2 cut(s)	715, 748
BamHI	GGATCC	1 cut(s)	848
BanI	GGYRCC	2 cut(s)	272, 801
BarI	GAAGNNNNNNTAC	2 cut(s)	242, 274
BauI	CACGAG	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	3 cut(s)	374, 479, 832
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciT130I	CCWGG	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	504
BisI	GCNGC	2 cut(s)	471, 642
BlsI	GCNGC	2 cut(s)	472, 643
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	2 cut(s)	348, 504
Bme18I	GGWCC	2 cut(s)	67, 632
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	67, 632
BmiI	GGNNCC	6 cut(s)	69, 78, 274, 633, 803, 850
BmrFI	CCNGG	2 cut(s)	348, 504
BmsI	GCATC	3 cut(s)	406, 436, 695
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	504
BsaBI	GATNNNNATC	2 cut(s)	288, 861
BsaJI	CCNNGG	3 cut(s)	63, 347, 852
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 662
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	3 cut(s)	23, 100, 192
Bse8I	GATNNNNATC	2 cut(s)	288, 861
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	63, 347, 852
BseGI	GGATG	4 cut(s)	118, 361, 460, 862
BseJI	GATNNNNATC	2 cut(s)	288, 861
BseLI	CCNNNNNNNGG	2 cut(s)	473, 662
BseNI	ACTGG	3 cut(s)	23, 100, 192
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	641
BshNI	GGYRCC	2 cut(s)	272, 801
BshTI	ACCGGT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	74, 441, 503
BslFI	GGGAC	2 cut(s)	53, 645
BslI	CCNNNNNNNGG	2 cut(s)	473, 662
BsmFI	GGGAC	2 cut(s)	53, 645
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
BspACI	CCGC	4 cut(s)	169, 493, 642, 842
BspANI	GGCC	1 cut(s)	641
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	2 cut(s)	292, 412
BspLI	GGNNCC	6 cut(s)	69, 78, 274, 633, 803, 850
BspPI	GGATC	6 cut(s)	140, 338, 494, 843, 856, 870
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	272, 801
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	3 cut(s)	23, 100, 192
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	3 cut(s)	63, 347, 852
BssMI	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	138, 588
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	852
BstEII	GGTNACC	1 cut(s)	488
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	4 cut(s)	118, 361, 460, 862
BstFNI	CGCG	1 cut(s)	495
BstKTI	GATC	6 cut(s)	148, 265, 346, 502, 851, 865
BstMBI	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	346, 502
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	3 cut(s)	499, 848, 862
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	3 cut(s)	499, 848, 862
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	1 cut(s)	852
BtsCI	GGATG	4 cut(s)	118, 361, 460, 862
BtsI	GCAGTG	3 cut(s)	108, 518, 788
BtsIMutI	CAGTG	3 cut(s)	108, 518, 788
Cac8I	GCNNGC	1 cut(s)	314
CciI	TCATGA	2 cut(s)	292, 412
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	67, 632
Csp6I	GTAC	3 cut(s)	399, 519, 802
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	8 cut(s)	7, 46, 113, 137, 293, 413, 727, 736
CviJI	RGCY	7 cut(s)	58, 77, 194, 377, 619, 641, 870
CviKI_1	RGCY	7 cut(s)	58, 77, 194, 377, 619, 641, 870
CviQI	GTAC	3 cut(s)	399, 519, 802
DpnI	GATC	6 cut(s)	147, 264, 345, 501, 850, 864
DpnII	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	138, 588
EarI	CTCTTC	2 cut(s)	138, 588
Eco47I	GGWCC	2 cut(s)	67, 632
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	2 cut(s)	67, 632
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	346
FaeI	CATG	8 cut(s)	10, 49, 116, 140, 296, 416, 730, 739
FaqI	GGGAC	2 cut(s)	53, 645
FatI	CATG	8 cut(s)	6, 45, 112, 136, 292, 412, 726, 735
FauI	CCCGC	1 cut(s)	835
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	471, 642
FokI	GGATG	4 cut(s)	105, 368, 467, 869
Fsp4HI	GCNGC	2 cut(s)	471, 642
GluI	GCNGC	2 cut(s)	471, 642
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	3 cut(s)	74, 441, 503
Hin1II	CATG	8 cut(s)	10, 49, 116, 140, 296, 416, 730, 739
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	4 cut(s)	13, 479, 613, 697
HpaII	CCGG	3 cut(s)	74, 441, 503
HphI	GGTGA	6 cut(s)	81, 382, 395, 455, 488, 677
Hpy166II	GTNNAC	3 cut(s)	331, 668, 751
Hpy188I	TCNGA	5 cut(s)	150, 484, 588, 612, 702
Hpy188III	TCNNGA	2 cut(s)	293, 413
Hpy8I	GTNNAC	3 cut(s)	331, 668, 751
Hpy99I	CGWCG	3 cut(s)	179, 344, 572
HpyAV	CCTTC	4 cut(s)	29, 90, 286, 386
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	7 cut(s)	49, 101, 140, 316, 511, 751, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	8 cut(s)	10, 49, 116, 140, 296, 416, 730, 739
KpnI	GGTACC	1 cut(s)	805
Kzo9I	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
LmnI	GCTCC	2 cut(s)	82, 766
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	3 cut(s)	406, 436, 695
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	4 cut(s)	164, 488, 596, 716
MalI	GATC	6 cut(s)	147, 264, 345, 501, 850, 864
MboI	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
MboII	GAAGA	7 cut(s)	125, 191, 194, 250, 440, 509, 575
MflI	RGATCY	3 cut(s)	499, 848, 862
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	2 cut(s)	173, 333
MslI	CAYNNNNRTG	1 cut(s)	857
MspI	CCGG	3 cut(s)	74, 441, 503
MspR9I	CCNGG	2 cut(s)	348, 504
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
NlaIII	CATG	8 cut(s)	10, 49, 116, 140, 296, 416, 730, 739
NlaIV	GGNNCC	6 cut(s)	69, 78, 274, 633, 803, 850
NmuCI	GTSAC	2 cut(s)	596, 716
NspV	TTCGAA	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	857
PagI	TCATGA	2 cut(s)	292, 412
PcsI	WCGNNNNNNNCGW	2 cut(s)	89, 339
PctI	GAATGC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	13, 479, 613
PinAI	ACCGGT	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	472, 643
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
PpuMI	RGGWCCY	2 cut(s)	67, 632
Psp5II	RGGWCCY	2 cut(s)	67, 632
Psp6I	CCWGG	1 cut(s)	346
PspEI	GGTNACC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	6 cut(s)	69, 78, 274, 633, 803, 850
PspPI	GGNCC	2 cut(s)	67, 632
PspPPI	RGGWCCY	2 cut(s)	67, 632
PsuI	RGATCY	3 cut(s)	499, 848, 862
RsaI	GTAC	3 cut(s)	400, 520, 803
RsaNI	GTAC	3 cut(s)	399, 519, 802
RseI	CAYNNNNRTG	1 cut(s)	857
SatI	GCNGC	2 cut(s)	471, 642
Sau3AI	GATC	6 cut(s)	145, 262, 343, 499, 848, 862
Sau96I	GGNCC	2 cut(s)	67, 632
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	348, 504
SduI	GDGCHC	1 cut(s)	753
SetI	ASST	8 cut(s)	69, 177, 278, 372, 379, 637, 658, 667
SfaNI	GCATC	3 cut(s)	406, 436, 695
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	2 cut(s)	67, 632
SmiMI	CAYNNNNRTG	1 cut(s)	857
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	4 cut(s)	169, 493, 642, 842
StyD4I	CCNGG	2 cut(s)	346, 502
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	4 cut(s)	83, 177, 261, 790
TaqII	GACCGA	1 cut(s)	581
TasI	AATT	1 cut(s)	524
TatI	WGTACW	2 cut(s)	398, 518
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	3 cut(s)	13, 479, 613
TscAI	CASTG	3 cut(s)	108, 518, 788
TseFI	GTSAC	2 cut(s)	596, 716
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	596, 716
TspDTI	ATGAA	5 cut(s)	17, 125, 309, 401, 441
TspGWI	ACGGA	2 cut(s)	404, 869
TspRI	CASTG	3 cut(s)	108, 518, 788
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	67, 632
XagI	CCTNNNNNAGG	1 cut(s)	660
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.